View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7174_low_4 (Length: 416)
Name: NF7174_low_4
Description: NF7174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7174_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 415
Target Start/End: Original strand, 883065 - 883471
Alignment:
| Q |
20 |
ctagcaaatacctccaattcattccctgcatatacaattaaaattaggggatcatcccataatttcagtaaattatagtacaaaaattactaattaatta |
119 |
Q |
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| T |
883065 |
ctagcaaatacctccaattcattccctgcatatactattaaaattaggggatcatcccataatttcagtaaattatagtacaaaaattactaattaatta |
883164 |
T |
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| Q |
120 |
gtcttgattaccatcagggtcatagaagaaaactcgtttgatgttgccattagtagtctcaaaagtctcaatacccttgttctgtaaatg--------nn |
211 |
Q |
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| T |
883165 |
gtcttgattaccatcagggtcatagaagaaaactcgtttgatgttgccattagtagtctcaaaagtctcaatacccttgtcctgtaaatgaaaaaaaaaa |
883264 |
T |
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| Q |
212 |
nnnnnnncttgtga---aattataacacatatatagtaatatctagcaaaacacaaatctaacaacagtggatgaaaattgaaaagaaaagagaagtacc |
308 |
Q |
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| T |
883265 |
aaaaaaacttgtgaaataattataacacatatatagtaatatctagcaaaacacaaatctaacaacagtggatgaaaattgaaaagaaaagagaagtacc |
883364 |
T |
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| Q |
309 |
ttgagagtgttgtgaaaggaatgaagattggagatggagaagcaaagatgatggcctaagcggatatgagaggggtctttaacaggaatggagaataatg |
408 |
Q |
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| T |
883365 |
ttgagagtgttgtgaaaggaatgaagattggagatggagaagcaaagatgatggcctaagcggatatgagaggggtctttaacaggaatggaggatgatg |
883464 |
T |
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| Q |
409 |
tagccag |
415 |
Q |
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|||||| |
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| T |
883465 |
gagccag |
883471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 880561 - 880606
Alignment:
| Q |
127 |
ttaccatcagggtcatagaagaaaactcgtttgatgttgccattag |
172 |
Q |
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||||||||||||||| | ||||||||| ||||||| |||||||||| |
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| T |
880561 |
ttaccatcagggtcaaaaaagaaaacttgtttgattttgccattag |
880606 |
T |
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