View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7174_low_6 (Length: 379)
Name: NF7174_low_6
Description: NF7174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7174_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 8288013 - 8287661
Alignment:
| Q |
18 |
gaaaaaacaacatgtagaaatggtgctttgtgtgttcctagaaacaaagataacaacataaactaaaagaaatttacagacaaattaaagatggttttcg |
117 |
Q |
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| T |
8288013 |
gaaaaaacaacatgtagaaatggtgctttgtgtgttcctagaaacaaagataacaacataaactaaaagaaaattacagacaaattaaagatggtttccg |
8287914 |
T |
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| Q |
118 |
gagactccagaaaagcgtaccttctcgatgatttaccgaatccacccatgcctaaggatgttgatccacatagttgtggctgatcttcgactgtcattac |
217 |
Q |
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| T |
8287913 |
gaaactccagaaaagcgtacctcctcgatgttttaccgaatccacccatgcctaaggatgtcgatccacatagttgtgactgatcttcgactgtcattgc |
8287814 |
T |
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| Q |
218 |
acgc--atgagagccaaataaacaaaagtccttaaatgtcttgaatcagagttatgcagtcttgtgttcacatgggaaatgtataaatataagagaatga |
315 |
Q |
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| T |
8287813 |
acgcatatgagagccaaataaacaaaagtccctaaatgtcttgaatcagagttatgcaatcttgtgttcacatgggaaatgtataaatataagagaatga |
8287714 |
T |
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| Q |
316 |
acaaattggttacaactcactaagggactaaggaatctttctttacgtgtgtg |
368 |
Q |
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| T |
8287713 |
agaaattggttacagctcactaaaggactaaggaatctttctttgcatgtgtg |
8287661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 8269584 - 8269518
Alignment:
| Q |
149 |
tttaccgaatccacccatgcctaaggatgttgatccacatagttgtggctgatcttcgactgtcatt |
215 |
Q |
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| T |
8269584 |
tttaccgaatccgcccatccccaaggatgttgttccacatagttgtggccgatcttcaaccgtcatt |
8269518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 37646665 - 37646590
Alignment:
| Q |
47 |
gtgtgttcctagaaacaaagataacaacataaactaaaagaaatttacagacaaattaaagatggttttcggagac |
122 |
Q |
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| T |
37646665 |
gtgtgttcctgcaaacaaagataacaacataaactaaaagaaaattatagacaaattaaagatggtttccggagac |
37646590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 1250825 - 1250767
Alignment:
| Q |
149 |
tttaccgaatccacccatgcctaaggatgttgatccacatagttgtggctgatcttcga |
207 |
Q |
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| T |
1250825 |
tttaccgaatccacccatccccaaggatgttgctccacatagttgtggccgatcttcga |
1250767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 26585362 - 26585307
Alignment:
| Q |
149 |
tttaccgaatccacccatgcctaaggatgttgatccacatagttgtggctgatctt |
204 |
Q |
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| T |
26585362 |
tttaccgaatccacccattcccaaggttgttgctccacatagttgtggccgatctt |
26585307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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