View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7174_low_7 (Length: 343)
Name: NF7174_low_7
Description: NF7174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7174_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 44133811 - 44133575
Alignment:
| Q |
1 |
tttcaaaccacaagtactaaataatgatcaagaagggacaagggttatcttaattttataagaatgtactatatatgttttgtgcaccaattataatgaa |
100 |
Q |
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| T |
44133811 |
tttcagaccacaagtactaaatagtgatcaagga---acaagggttatcttaattttataagaatgtactatatatgttttgtgcaccaattataataaa |
44133715 |
T |
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| Q |
101 |
cgattttgtcacggactagaaaatgacatactacgattctgcactagccgcaaaatcaaagtggacactgtgcatgcctcaagccaaagatagaaaatca |
200 |
Q |
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| T |
44133714 |
cgattttgtcacggactagaaaatgacatactacgattctgcactagccgcaaaatcaaagtggacactgtgcatgcctcaagccaaagatagaaaatca |
44133615 |
T |
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| Q |
201 |
aatttggtgtcttttttcattgtttattacaaagttcagc |
240 |
Q |
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| T |
44133614 |
aatttggtgtcttttttcattgtttattacaaatttcagc |
44133575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 44133524 - 44133485
Alignment:
| Q |
291 |
cattatcgttatttaattggaaaaaggaacgtctctctct |
330 |
Q |
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| T |
44133524 |
cattatcgttatttaattggaaaaaggaacgtctctctct |
44133485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 48 - 240
Target Start/End: Complemental strand, 50050634 - 50050442
Alignment:
| Q |
48 |
tcttaattttataagaatgtactatatatgttttgtgcaccaattataatgaacgattttgtcacggactagaaaatgacatactacgattctgcactag |
147 |
Q |
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| T |
50050634 |
tcttaattttataagaatgtactatatatgttttgtgcaccaattataatgaacgattttgtcacggactagaaaatgacatactacgattctgcactag |
50050535 |
T |
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| Q |
148 |
ccgcaaaatcaaagtggacactgtgcatgcctcaagccaaagatagaaaatcaaatttggtgtcttttttcattgtttattacaaagttcagc |
240 |
Q |
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| T |
50050534 |
ccgcaaaatcaaagtggacactgtaaatgcctcaagccaaagatagaaaatcaaatttggtgtcttttttcattgtttattacaaatttcagc |
50050442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 50050396 - 50050357
Alignment:
| Q |
291 |
cattatcgttatttaattggaaaaaggaacgtctctctct |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
50050396 |
cattatcgttatttaattggaaaaaggaacgtctctctct |
50050357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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