View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7175_high_2 (Length: 391)
Name: NF7175_high_2
Description: NF7175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7175_high_2 |
 | |
|
| [»] scaffold0062 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0062 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 15582 - 15941
Alignment:
| Q |
19 |
gaaataattaaaaccaatatctcagaattccacttcattttggggtttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaa |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15582 |
gaaataatcaaaaccaatatctcagaattccacttcattttgggatttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaa |
15681 |
T |
|
| Q |
119 |
cttggaatactagagcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
15682 |
cttggaatactagagcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgt |
15781 |
T |
|
| Q |
219 |
taaaactccattcaatcctgttgaggaaaatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
15782 |
taaaactccattcaatcctgttgaggaaactatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaac |
15881 |
T |
|
| Q |
319 |
ataattgatggcattgacattaattatcttaacgtcttccatactacaaatgacacaggt |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15882 |
ataattgatggcattgacattaattatcttaacgtcttccatactacaaatgacacaggt |
15941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 25750 - 26109
Alignment:
| Q |
19 |
gaaataattaaaaccaatatctcagaattccacttcattttggggtttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaa |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25750 |
gaaataatcaaaaccaatatctcagaattccacttcattttgggatttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaa |
25849 |
T |
|
| Q |
119 |
cttggaatactagagcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
25850 |
cttggaatactagagcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgt |
25949 |
T |
|
| Q |
219 |
taaaactccattcaatcctgttgaggaaaatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
25950 |
taaaactccattcaatcctgttgaggaaactatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaac |
26049 |
T |
|
| Q |
319 |
ataattgatggcattgacattaattatcttaacgtcttccatactacaaatgacacaggt |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26050 |
ataattgatggcattgacattaattatcttaacgtcttccatactacaaatgacacaggt |
26109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Original strand, 35916 - 36275
Alignment:
| Q |
19 |
gaaataattaaaaccaatatctcagaattccacttcattttggggtttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaa |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35916 |
gaaataatcaaaaccaatatctcagaattccacttcattttgggatttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaa |
36015 |
T |
|
| Q |
119 |
cttggaatactagagcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
36016 |
cttggaatactagagcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgt |
36115 |
T |
|
| Q |
219 |
taaaactccattcaatcctgttgaggaaaatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
36116 |
taaaactccattcaatcctgttgaggaaactatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaac |
36215 |
T |
|
| Q |
319 |
ataattgatggcattgacattaattatcttaacgtcttccatactacaaatgacacaggt |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36216 |
ataattgatggcattgacattaattatcttaacgtcttccatactacaaatgacacaggt |
36275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 32 - 345
Target Start/End: Original strand, 5267 - 5580
Alignment:
| Q |
32 |
ccaatatctcagaattccacttcattttggggtttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaacttggaatactag |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| | ||||||||||| | | |||| | |||||||||||||||||| ||||||||| | |
|
|
| T |
5267 |
ccaatatctcagaattccacttcattttgggctttgcaagcgaggagtatgatgataaaaaaagaggcacaggagttttcaaaacaacttggaacgttga |
5366 |
T |
|
| Q |
132 |
agcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgttaaaactccattc |
231 |
Q |
| |
|
| ||||||||||||| |||| | ||||||| ||||||| ||||||||||||| |||||||| |||||||| |||| | |||||||||||| |
|
|
| T |
5367 |
attcttcggtccagaagatgtgaaacggttgaaggaaaataataaaaatgtgaaggtggtaataagctttggaggttgtgac---gaaaaaactccattc |
5463 |
T |
|
| Q |
232 |
aatcctgttgaggaaaatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggc---aacataattgatg |
328 |
Q |
| |
|
||||||| |||||| ||||| |||| | | |||||| |||||||||||| |||||||| || || ||||||||||| |||| | |||||||||| |
|
|
| T |
5464 |
aatcctgctgaggataatatatggacggagaaagctgtggcttcactcaaagtgatcatcctaagattcaaggatcaaagtggcagaagtataattgatg |
5563 |
T |
|
| Q |
329 |
gcattgacattaattat |
345 |
Q |
| |
|
| |||||||| |||||| |
|
|
| T |
5564 |
gtattgacatcaattat |
5580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University