View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7175_high_3 (Length: 288)
Name: NF7175_high_3
Description: NF7175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7175_high_3 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 30090889 - 30091164
Alignment:
| Q |
13 |
cagaggcatgaggacaagccatggatgttcctgacatgaaattgtagtcacttgataagaacacatcggtaccaattctagctgttggtttataaggaac |
112 |
Q |
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| T |
30090889 |
cagaggcatgaggacaagccatggatgttcctgacatgaaattgtagtcacttgataagaacacatcggtaccaattctagctgttggtttataaggaac |
30090988 |
T |
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| Q |
113 |
aaaagcagcgagaactcttgatccaggtgccattatgtcaggcttcaaaatccatggaaagccatgtgatggacctcttgatgagtaatgagctgcaatt |
212 |
Q |
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| T |
30090989 |
aaaagcagcgagaactcttgatccaggtgccattatgtcaggcttcaaaatccaaggaaagccatgtgatggacctcttgatgagtaatgagctgcaatt |
30091088 |
T |
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| Q |
213 |
ggtgccggttttattccaagaaatgtttgttgaaacttaatgcttgctgttggattattcttattgcgttttgcgt |
288 |
Q |
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| T |
30091089 |
ggtgccggttttattccaagaaatgtttgttgaaacttaatgcttgctgttggattattcttattgcgttttgcgt |
30091164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 30100021 - 30099772
Alignment:
| Q |
19 |
catgaggacaagccatggatgttcctgacatgaaattgtagtcacttgataagaacacatcggtaccaattctagctgttggtttataaggaacaaaagc |
118 |
Q |
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| T |
30100021 |
catgaggacaagacatggatgttcctgacatgaaattgtagtcacttgataagaacacatttgtgccaattctagctgttggtttgttaggaatataagc |
30099922 |
T |
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| Q |
119 |
agcgagaactcttgatccaggtgccattatgtcaggcttcaaaatccatggaaagccatgtgatggacctcttgatgagtaatgagctgcaattggtgcc |
218 |
Q |
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| T |
30099921 |
tgcaagaactcttgatccaggtgccattatatcaggtttcaaaatccatggatagctatgtgaaggacctcttgatgagtaatatgctgcagctggtgcc |
30099822 |
T |
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| Q |
219 |
ggttttattccaagaaatgtttgttgaaacttaatgcttgctgttggatt |
268 |
Q |
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| T |
30099821 |
ggctttgttcctacaaatgtttgttgaaatttgatgcttgatgtaggatt |
30099772 |
T |
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