View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7175_high_6 (Length: 250)
Name: NF7175_high_6
Description: NF7175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7175_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 2334253 - 2334165
Alignment:
| Q |
1 |
attttgtttgtggttgaaatattcctaaagtaaataacaattgtggccaagattttaacaaacaattggtaggtaaataaaatcaatttg |
90 |
Q |
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| T |
2334253 |
attttgttcgtggttgaaatattcctaaagtaaataacaattgtggccaagattttaacaaacaa-tggtaggtaaataaaatcaatttg |
2334165 |
T |
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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 170
Target Start/End: Complemental strand, 2333903 - 2333868
Alignment:
| Q |
135 |
cttaaaattataaacgtggaaataaggcatatatta |
170 |
Q |
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| T |
2333903 |
cttaaaattataaacgtggaaataaggcatatatta |
2333868 |
T |
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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 54183041 - 54183104
Alignment:
| Q |
45 |
ggccaagattttaacaaacaattggtaggtaaataaaatcaatttggataagtaatacatcttta |
109 |
Q |
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| T |
54183041 |
ggcctagattttaacaaacaat-ggtaggtaaataaaatcaatttgtataagtattacatcttta |
54183104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 54183343 - 54183408
Alignment:
| Q |
109 |
agagaacggatcgataccgtcaaaagcttaaaattataaacgtggaaataaggcatatattagaaa |
174 |
Q |
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| T |
54183343 |
agagaacggatcgatgcagtcaaaagcttaaatttaaaatcatggaaataaggtatttattagaaa |
54183408 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 45282719 - 45282664
Alignment:
| Q |
1 |
attttgtttgtggttgaaatattcctaaagtaaataacaattgtggccaagatttt |
56 |
Q |
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| T |
45282719 |
attttgtacgtggttgaaacattcctaaagtaaataacaagtttggcctagatttt |
45282664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 45282642 - 45282603
Alignment:
| Q |
41 |
ttgtggccaagattttaacaaacaattggtaggtaaataaa |
81 |
Q |
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| T |
45282642 |
ttgtggcctagattttaacaaacaa-tggtaggtaaataaa |
45282603 |
T |
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