View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7175_low_11 (Length: 224)
Name: NF7175_low_11
Description: NF7175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7175_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 32062428 - 32062628
Alignment:
| Q |
14 |
caaaggtggaaaatgcttgtcaccacggtttagtagaccccacaatcaacatgaaggaagcaatggatgacataaacaacatgtttgggaagccaataga |
113 |
Q |
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| T |
32062428 |
caaaggtggaaaatgcttgtcaccacggtttagtagaccccacaatcaacatgaaggaagcaatggatgacataaacaacatgtttgggaagccaataga |
32062527 |
T |
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| Q |
114 |
ctttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttttcaatccttgccgatgatgatgat |
213 |
Q |
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| T |
32062528 |
ctttgttagaaagaaaaggtcactgaagcaagagaatgcaccggagaacaatagtggaaaggaattcggtgggttttcaatccttgccgatgatgatgat |
32062627 |
T |
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| Q |
214 |
g |
214 |
Q |
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| T |
32062628 |
g |
32062628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 32062652 - 32062758
Alignment:
| Q |
103 |
aagccaatagactttgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttttcaatccttgccg |
202 |
Q |
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| T |
32062652 |
aagccaatagattttgttcggaaaaaaagattaatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcgg |
32062751 |
T |
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| Q |
203 |
atgatga |
209 |
Q |
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| T |
32062752 |
atgatga |
32062758 |
T |
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