View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7175_low_2 (Length: 528)
Name: NF7175_low_2
Description: NF7175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7175_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 9 - 510
Target Start/End: Original strand, 30091141 - 30091642
Alignment:
| Q |
9 |
gattattcttattgcgttttgcgtacttgatcacagattctgcatcttttgccttgataacaatacctggagcgtagatatgtcttaaatcaattaattc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30091141 |
gattattcttattgcgttttgcgtacttgatcacagattctgcatcttttgtcttgataacaatacctggagcgtagatatgtcttaaatcaattaattc |
30091240 |
T |
|
| Q |
109 |
aggactatcagagagaaacactgcccctaacacattagtttgtgtaacaacatcgatttgatcaaacactgagattgagtttgatattgagtcacaaata |
208 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30091241 |
aggactatcagagagaaacactgcccctaacatattggtttgtgtaacaacatcgatttgatcaaacactgagcttgagtttgatattgagtcacaaata |
30091340 |
T |
|
| Q |
209 |
attatgacttgcttgttaacttgagataaacgcttcactgaattgcatgaagataaagtgttatcgtaaacaagaggaagattttcgactctagttgaat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30091341 |
attatgacttgcttgttaacttgagataaacgcttcactgaattgcatgaagataaagtgttatcgtaaacaagaggaagattttcgactatagttgaat |
30091440 |
T |
|
| Q |
309 |
ttgatgcaaacaaagtccaaccaataatgttttgaccattccccaaaacaaggctgccaaaagttctatctatggttcctgcagctacagtaagaaccca |
408 |
Q |
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| T |
30091441 |
ttgatgcaaacaaagtccaaccaataatgttttgaccattccccaaaacaaggctgccaaaagttctatctatggttcctgcagctacagtaagaaccca |
30091540 |
T |
|
| Q |
409 |
agggataccattgtgcaaagttccatgcttcggtcctgagttacctgcagaagacgaaacaacaatccctttctccatagctgcaaaagaagctattgct |
508 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30091541 |
agggataccattgtgcaaagttccatgcttaggtcctgagttacctgcagaagacgaaacaacaatccctttctccatagctgcaaaagaagctattgct |
30091640 |
T |
|
| Q |
509 |
at |
510 |
Q |
| |
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|| |
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| T |
30091641 |
at |
30091642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 17 - 510
Target Start/End: Complemental strand, 30099770 - 30099271
Alignment:
| Q |
17 |
ttattgcgttttgcgtacttgatcacagattctgcatcttttgccttgataacaatacctggagcgtagatatgtcttaaatcaattaattcaggactat |
116 |
Q |
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||||||| ||||| || ||||||||||||| ||||||||||| |||||| ||||||| ||||| ||||||| ||| |||||| ||||| | |||||||| |
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| T |
30099770 |
ttattgctctttgcataattgatcacagattgtgcatcttttggcttgattacaatacttggagtgtagatacgtcctaaatcgattaactgaggactat |
30099671 |
T |
|
| Q |
117 |
cagagagaaacactgcccctaacacattagtttgtgtaacaacatcgatttgatcaaacactgagattgagttt------gatattgagtca---caaat |
207 |
Q |
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| T |
30099670 |
cagagacaaacactgcccctaacagattggcttctgtaacaacattgatttggttaaacactgaggttttgtttctgtttgacaatgagtcatcacagag |
30099571 |
T |
|
| Q |
208 |
aattatgacttgcttgttaacttgagataaacgcttcactgaattgcatgaagataaagtgttatcgtaaacaagaggaagattttcgactctagttgaa |
307 |
Q |
| |
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||| || |||| ||||||| ||||||||| |||| ||| |||||||||||||||||||||| ||||||||| ||| |||||| ||| ||| | |
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| T |
30099570 |
aataatcacttttttgttaagttgagataacaagttcaatgagttgcatgaagataaagtgttattgtaaacaagtagaacattttcaactatagc---a |
30099474 |
T |
|
| Q |
308 |
tttgatgcaaacaaagtccaaccaataatgttttgaccattccccaaaacaaggctgccaaaagttctatctatggttcctgcagctacagtaagaaccc |
407 |
Q |
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|||| || |||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||||||| | || |
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| T |
30099473 |
tttgctggaaacaaagtccaaccaataatgctttgaccatttcccaaaacaagagtgccaaaagttctatctattgttcctgcagctgcagtaaggagcc |
30099374 |
T |
|
| Q |
408 |
aagggataccattgtgcaaagttccatgcttcggtcctgagttacctgcagaagacgaaacaacaatccctttctccatagctgcaaaagaagctattgc |
507 |
Q |
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| T |
30099373 |
atgggataccattgtgcaaggttccgaattcaggtcctgcgttacctgcagaagatgaaacaacaatccctttttccatagctgcaaatgaagctattgc |
30099274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 325 - 510
Target Start/End: Original strand, 30087477 - 30087662
Alignment:
| Q |
325 |
ccaaccaataatgttttgaccattccccaaaacaaggctgccaaaagttctatctatggttcctgcagctacagtaagaacccaagggataccattgtgc |
424 |
Q |
| |
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||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30087477 |
ccaaccaataatgttttcaccatttcccaaaacaaggctgccaaaagttctatctgtggttcctgcagctacagtaaggacccaagggataccattgtgc |
30087576 |
T |
|
| Q |
425 |
aaagttccatgcttcggtcctgagttacctgcagaagacgaaacaacaatccctttctccatagctgcaaaagaagctattgctat |
510 |
Q |
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|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30087577 |
aaggttccatgcttaggtcctgagttacctgcagaagatgaaacaacaatccctttctccatagctgtaaaagaagctattgctat |
30087662 |
T |
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