View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7176_low_1 (Length: 434)

Name: NF7176_low_1
Description: NF7176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7176_low_1
NF7176_low_1
[»] chr3 (25 HSPs)
chr3 (170-416)||(36463094-36463350)
chr3 (13-123)||(36462934-36463047)
chr3 (205-390)||(36661709-36661902)
chr3 (24-104)||(24569099-24569179)
chr3 (24-123)||(8679053-8679155)
chr3 (24-104)||(37311986-37312066)
chr3 (24-104)||(43253862-43253942)
chr3 (33-104)||(34750532-34750603)
chr3 (23-104)||(30190658-30190739)
chr3 (23-104)||(36476620-36476701)
chr3 (23-104)||(52290929-52291010)
chr3 (24-104)||(11905858-11905938)
chr3 (24-104)||(23004381-23004461)
chr3 (27-110)||(12736574-12736657)
chr3 (27-104)||(30682068-30682145)
chr3 (25-102)||(51837959-51838036)
chr3 (32-104)||(11632117-11632189)
chr3 (24-104)||(19823047-19823127)
chr3 (24-123)||(29023965-29024066)
chr3 (24-104)||(37695665-37695745)
chr3 (24-103)||(37772963-37773042)
chr3 (27-104)||(3901151-3901228)
chr3 (48-101)||(44301601-44301654)
chr3 (23-104)||(54726521-54726602)
chr3 (48-104)||(30711109-30711165)
[»] chr1 (32 HSPs)
chr1 (27-104)||(6160464-6160541)
chr1 (48-121)||(7351652-7351728)
chr1 (27-104)||(35538679-35538756)
chr1 (24-104)||(39864147-39864227)
chr1 (24-101)||(28749030-28749107)
chr1 (23-104)||(40144848-40144929)
chr1 (23-104)||(49223987-49224068)
chr1 (24-104)||(23168995-23169075)
chr1 (24-104)||(26093430-26093510)
chr1 (24-100)||(32970569-32970645)
chr1 (23-66)||(3158016-3158059)
chr1 (33-104)||(44707771-44707842)
chr1 (22-104)||(20209840-20209922)
chr1 (27-104)||(8896337-8896414)
chr1 (23-84)||(15444482-15444543)
chr1 (24-104)||(9307663-9307743)
chr1 (24-104)||(16395049-16395128)
chr1 (24-104)||(30754943-30755023)
chr1 (33-104)||(41121836-41121907)
chr1 (23-104)||(15699158-15699240)
chr1 (24-102)||(31042835-31042913)
chr1 (27-104)||(31154164-31154241)
chr1 (27-104)||(36701957-36702034)
chr1 (27-104)||(36718061-36718138)
chr1 (23-104)||(42410030-42410111)
chr1 (23-104)||(45331377-45331458)
chr1 (48-104)||(917060-917116)
chr1 (24-104)||(4441605-4441685)
chr1 (24-104)||(12039118-12039198)
chr1 (24-104)||(24991655-24991735)
chr1 (24-112)||(34031529-34031617)
chr1 (24-104)||(37276497-37276577)
[»] chr5 (20 HSPs)
chr5 (24-104)||(40530221-40530301)
chr5 (24-104)||(6315774-6315854)
chr5 (29-110)||(11796169-11796250)
chr5 (23-104)||(29374378-29374459)
chr5 (24-104)||(6753656-6753735)
chr5 (24-104)||(7827923-7828003)
chr5 (24-104)||(27542831-27542911)
chr5 (23-104)||(21060666-21060747)
chr5 (23-104)||(40899954-40900035)
chr5 (48-104)||(4441057-4441113)
chr5 (24-104)||(4818587-4818667)
chr5 (24-104)||(29570428-29570508)
chr5 (48-104)||(41062181-41062237)
chr5 (33-104)||(27580636-27580707)
chr5 (24-102)||(9515784-9515862)
chr5 (23-104)||(1248600-1248681)
chr5 (24-104)||(5731812-5731892)
chr5 (24-104)||(8698345-8698425)
chr5 (24-104)||(31655089-31655169)
chr5 (33-101)||(32440180-32440248)
[»] chr8 (23 HSPs)
chr8 (26-104)||(31082655-31082733)
chr8 (27-123)||(31331422-31331521)
chr8 (23-104)||(32476323-32476404)
chr8 (24-104)||(1875592-1875672)
chr8 (24-104)||(9300113-9300193)
chr8 (24-104)||(17719258-17719338)
chr8 (23-104)||(10097990-10098071)
chr8 (24-104)||(10179947-10180027)
chr8 (24-104)||(21216101-21216181)
chr8 (24-104)||(31271057-31271137)
chr8 (24-104)||(39482651-39482731)
chr8 (33-104)||(44761503-44761574)
chr8 (18-104)||(396605-396691)
chr8 (27-104)||(4428354-4428431)
chr8 (51-104)||(4924094-4924147)
chr8 (24-104)||(7172950-7173030)
chr8 (24-104)||(26626112-26626192)
chr8 (48-104)||(36006911-36006967)
chr8 (24-104)||(42972508-42972588)
chr8 (24-104)||(45425666-45425746)
chr8 (23-104)||(34393953-34394034)
chr8 (48-104)||(11976960-11977016)
chr8 (30-66)||(41687400-41687436)
[»] chr7 (29 HSPs)
chr7 (23-104)||(7463256-7463337)
chr7 (24-104)||(24516295-24516375)
chr7 (24-104)||(34100553-34100633)
chr7 (23-104)||(42935704-42935785)
chr7 (24-104)||(28103776-28103856)
chr7 (24-123)||(38391769-38391871)
chr7 (24-104)||(41506071-41506151)
chr7 (24-110)||(2850887-2850973)
chr7 (23-104)||(27921031-27921112)
chr7 (24-104)||(83428-83508)
chr7 (24-104)||(759097-759177)
chr7 (24-104)||(3178210-3178290)
chr7 (24-104)||(8592446-8592526)
chr7 (24-104)||(11373434-11373514)
chr7 (24-104)||(12631348-12631428)
chr7 (24-104)||(13962002-13962082)
chr7 (24-104)||(21759990-21760070)
chr7 (24-104)||(46478299-46478379)
chr7 (23-104)||(28202314-28202395)
chr7 (24-108)||(33819253-33819337)
chr7 (48-101)||(39452390-39452443)
chr7 (24-104)||(16560576-16560656)
chr7 (24-104)||(16605006-16605086)
chr7 (24-104)||(19271739-19271819)
chr7 (48-104)||(21350655-21350711)
chr7 (24-104)||(22738744-22738824)
chr7 (24-104)||(29835420-29835500)
chr7 (24-104)||(34947543-34947623)
chr7 (24-84)||(44180268-44180328)
[»] chr4 (39 HSPs)
chr4 (27-104)||(49175942-49176019)
chr4 (24-104)||(35380338-35380418)
chr4 (25-104)||(5841433-5841512)
chr4 (27-101)||(461997-462071)
chr4 (23-104)||(17114476-17114557)
chr4 (24-104)||(6643665-6643745)
chr4 (24-104)||(11907604-11907684)
chr4 (24-104)||(17237301-17237381)
chr4 (24-104)||(28500896-28500976)
chr4 (24-104)||(34360691-34360771)
chr4 (24-104)||(40122859-40122939)
chr4 (24-104)||(44536201-44536281)
chr4 (24-104)||(47464370-47464450)
chr4 (24-123)||(49428347-49428449)
chr4 (24-104)||(52247433-52247513)
chr4 (24-104)||(52859804-52859884)
chr4 (32-101)||(3098757-3098826)
chr4 (23-104)||(19265844-19265925)
chr4 (23-104)||(47773023-47773104)
chr4 (24-104)||(2942650-2942729)
chr4 (24-104)||(7061669-7061749)
chr4 (24-104)||(11288635-11288714)
chr4 (24-104)||(32884837-32884917)
chr4 (24-104)||(33790736-33790816)
chr4 (24-104)||(38405107-38405187)
chr4 (24-104)||(42517643-42517723)
chr4 (48-104)||(49746997-49747053)
chr4 (33-104)||(36985822-36985893)
chr4 (34-104)||(16821346-16821416)
chr4 (24-66)||(17121316-17121358)
chr4 (26-104)||(46396890-46396968)
chr4 (23-104)||(3689598-3689679)
chr4 (27-108)||(53412140-53412221)
chr4 (24-104)||(2066825-2066905)
chr4 (24-104)||(21240709-21240789)
chr4 (48-123)||(26147644-26147722)
chr4 (24-104)||(43237279-43237359)
chr4 (24-84)||(51625139-51625199)
chr4 (24-104)||(53346795-53346875)
[»] scaffold0302 (1 HSPs)
scaffold0302 (24-104)||(16134-16214)
[»] chr6 (25 HSPs)
chr6 (24-104)||(3291766-3291846)
chr6 (27-104)||(1063604-1063681)
chr6 (23-104)||(11655943-11656024)
chr6 (24-104)||(29363342-29363422)
chr6 (24-104)||(31894208-31894288)
chr6 (48-100)||(34300035-34300087)
chr6 (26-104)||(1955979-1956057)
chr6 (24-102)||(23142705-23142783)
chr6 (23-101)||(32440642-32440720)
chr6 (27-104)||(1781838-1781915)
chr6 (24-104)||(3720239-3720319)
chr6 (24-123)||(13087544-13087646)
chr6 (24-104)||(13909460-13909540)
chr6 (24-104)||(15058153-15058233)
chr6 (24-84)||(21018815-21018875)
chr6 (24-66)||(12438782-12438824)
chr6 (23-104)||(5302387-5302468)
chr6 (23-104)||(6801967-6802048)
chr6 (24-101)||(27448154-27448231)
chr6 (23-104)||(30716936-30717017)
chr6 (24-104)||(181592-181671)
chr6 (24-64)||(12340035-12340075)
chr6 (32-123)||(17835398-17835492)
chr6 (24-104)||(21010213-21010293)
chr6 (24-104)||(26592358-26592438)
[»] chr2 (21 HSPs)
chr2 (24-104)||(8947049-8947129)
chr2 (24-104)||(35313923-35314003)
chr2 (23-104)||(15359083-15359164)
chr2 (23-104)||(16463725-16463806)
chr2 (24-104)||(16805917-16805997)
chr2 (24-104)||(16845198-16845278)
chr2 (24-104)||(34225626-34225706)
chr2 (24-104)||(39691526-39691606)
chr2 (24-104)||(45235617-45235697)
chr2 (23-104)||(14523368-14523449)
chr2 (27-104)||(27866528-27866604)
chr2 (24-104)||(34120436-34120514)
chr2 (31-104)||(37322464-37322537)
chr2 (24-104)||(5789645-5789725)
chr2 (24-104)||(43115799-43115879)
chr2 (24-104)||(43410462-43410542)
chr2 (23-98)||(34437997-34438072)
chr2 (45-104)||(39329682-39329741)
chr2 (23-104)||(33729913-33729993)
chr2 (48-104)||(1206724-1206780)
chr2 (24-104)||(16377653-16377733)
[»] scaffold0294 (1 HSPs)
scaffold0294 (24-104)||(17071-17151)
[»] scaffold0159 (1 HSPs)
scaffold0159 (24-104)||(34018-34098)
[»] scaffold0328 (1 HSPs)
scaffold0328 (23-123)||(7979-8082)
[»] scaffold0003 (1 HSPs)
scaffold0003 (24-101)||(39127-39204)
[»] scaffold0583 (1 HSPs)
scaffold0583 (24-104)||(2061-2141)
[»] scaffold0330 (1 HSPs)
scaffold0330 (24-104)||(5426-5506)
[»] scaffold0110 (1 HSPs)
scaffold0110 (23-103)||(1741-1821)
[»] scaffold0018 (1 HSPs)
scaffold0018 (24-104)||(136036-136116)
[»] scaffold0012 (1 HSPs)
scaffold0012 (24-104)||(105720-105800)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 170 - 416
Target Start/End: Original strand, 36463094 - 36463350
Alignment:
Q  170 gtatcgttaagtcaaagtcaaataatggagtattaatttatttcaataggtatg----acgaaagcaaggtccacc-actaactttat-----atgtgtt 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| |||||||||||     |||||||    
T  36463094 gtatcgttaagtcaaagtcaaataatggagtattaatttatttcaataggtatgtatgacgaaagcaaggtccacccactaactttattattcatgtgtt 36463193  T
Q  260 tgcactttgctcagcatttcgtaaggatcatttcatttcctgcacatatatatacacacctgccatgttgctctaaaactcaacctatatcctcacaact 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  36463194 tgcactttgctcagcatttcgtaaggatcatttcatttcctgcacatatatatacacacctgctatattgctctaaaactcaacctatatcctcacaact 36463293  T
Q  360 caattcttagctatgttgttctactacattttctttgctattatcttcctcttcctt 416  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36463294 caattcttagctatgttgttctacttcattttctttgctattatcttcctcttcctt 36463350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 36462934 - 36463047
Alignment:
Q  13 aatattagtcgttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtttgt---gt 109  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||   ||    
T  36462934 aatattagtcgttattaaaaaaatgattgatagtattgattttaatgttaaaattggtagcatttactaaaataaccttattaattgttgtttgtggagt 36463033  T
Q  110 aattaagttggatg 123  Q
    ||||||||||||||    
T  36463034 aattaagttggatg 36463047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 205 - 390
Target Start/End: Original strand, 36661709 - 36661902
Alignment:
Q  205 atttatttcaataggtatgacgaaagcaaggtccacc-actaactttat-----atgtgtttgcactttgctcagcat---ttcgtaaggatcatttcat 295  Q
    ||||||| |||||||||||||||||||||||| |||| ||| ||| |||     ||||||||||||||||  ||  ||   ||| | |||||||||| ||    
T  36661709 atttattacaataggtatgacgaaagcaaggttcacccactcactatattattcatgtgtttgcactttgaacataatatcttcttgaggatcatttaat 36661808  T
Q  296 ttcctgcacatatatatacacacctgc-catgttgctctaaaactcaacctatatcctcacaactcaattcttagctatgttgttctactacattt 390  Q
    ||||||||  ||||||||||||||||| ||| ||||||| ||||||| ||||||||||  || |||||||| ||||||| ||||||||||||||||    
T  36661809 ttcctgca--tatatatacacacctgcacatattgctctcaaactcagcctatatccttgcatctcaattcctagctatattgttctactacattt 36661902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 24569099 - 24569179
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || ||||||| |||| |||||||  || |||||||||||||| |||||||||||||||||    
T  24569099 ttattaagaaaatgattaattgtgttgatttcaatggtaaaattaatattatttactaaaatacccttattaattgtagtt 24569179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 8679053 - 8679155
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtttgtg---taattaagttgg 120  Q
    |||||||| |||||||| || || ||||||| |||| ||||||| |||| ||||||||||| | ||||||||||| ||||| |||   ||||||||||||    
T  8679053 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaagatccttattaattatagttagtgaattaattaagttgg 8679152  T
Q  121 atg 123  Q
    |||    
T  8679153 atg 8679155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 37312066 - 37311986
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || ||||||| |||| ||||||| |||| ||||||||||| | |||||||||||||||||    
T  37312066 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaaaacccttattaattgtagtt 37311986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 43253862 - 43253942
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || ||||||| |||| ||||||| |||| ||||||||||| | |||||||||||||||||    
T  43253862 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacacccttattaattgtagtt 43253942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 34750603 - 34750532
Alignment:
Q  33 aaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||| || |||||||||||| ||||||| |||  ||||||||||| | |||||||||||||||||    
T  34750603 aaatgattgattgtgttgattttaatggtaaaattagtatcatttactaaaacatccttattaattgtagtt 34750532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 30190658 - 30190739
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||| ||| |||||||| || || ||||||| |||| ||||||| |||  ||||||||||||| |||||||||||||||||    
T  30190658 gttatgaaggaaatgattaattgtgttgatttcaatggtaaaattagtatcatttactaaaatacccttattaattgtagtt 30190739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 36476701 - 36476620
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||| |||||| || ||||||  |||| |||||||  ||  ||||||||||||| |||||||||||||||||    
T  36476701 gttattaagaaaataattgattgtgttgattgcaatggtaaaattaatatcatttactaaaatacccttattaattgtagtt 36476620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 52291010 - 52290929
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||||||| || ||||||||||| ||| ||||||| |||  ||||| ||||| | ||||||||||| |||||    
T  52291010 gttattaagaaaatgattaattgtattgattttgatggtaaaattagtaccatttattaaaacagccttattaattatagtt 52290929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 11905938 - 11905858
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || || ||||| ||||||||||| |||  ||||||||||  | |||||||||||||||||    
T  11905938 ttattaagaaaatgattaattgtgttaattttgatgataaaattagtatcatttactaaagcacccttattaattgtagtt 11905858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 23004381 - 23004461
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || | ||||| |||| ||||||| ||||||| |||||||| | |||||||||||||||||    
T  23004381 ttattaaggaaatgattaattgtgtcgatttcaatggtaaaattagtagtatatactaaaacacccttattaattgtagtt 23004461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 12736574 - 12736657
Alignment:
Q  27 ttaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtttgtgta 110  Q
    ||||| |||||||| || || |||||| ||||||||||||| |||  |||||||| |||| |||||||||||||| || |||||    
T  12736574 ttaaggaaatgattaattgtgttgattctaatgataaaattagtatcatttactacaatacccttattaattgtacttagtgta 12736657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 30682068 - 30682145
Alignment:
Q  27 ttaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||| |||||||| || || || ||||||||| ||||||  |||  |||||||||||||| ||||||||||||||||    
T  30682068 ttaaggaaatgattaattgttttaattttaatgttaaaatgagtatcatttactaaaataatcttattaattgtagtt 30682145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 51837959 - 51838036
Alignment:
Q  25 tattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtag 102  Q
    ||||||| |||||||| || || ||||||| ||||||||||||  ||  ||||||||||||| |||||||| ||||||    
T  51837959 tattaagtaaatgattaattgtgttgatttcaatgataaaattaatatcatttactaaaatacccttattagttgtag 51838036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 11632189 - 11632117
Alignment:
Q  32 aaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||| || || ||||||| || | ||||||| |||||||||||||||| | | |||||||||||||||    
T  11632189 aaaatgattaattgtgttgatttcaacggtaaaattagtagtatttactaaaacacctttattaattgtagtt 11632117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 19823127 - 19823047
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || |||||||| ||| || |||| |||  ||||||||||| | |||||||||||||||||    
T  19823127 ttattaaggaaatgattaattgtgttgattttgatggtagaattagtatcatttactaaaacacccttattaattgtagtt 19823047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 29023965 - 29024066
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtttgt---gtaattaagttgg 120  Q
    ||||||| ||||||||| || || |||||||| ||| ||||||| |||  |||||||||||  | |||||||||||||||| ||   |||||||||||||    
T  29023965 ttattaaaaaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaa-catcttattaattgtagttagtggagtaattaagttgg 29024063  T
Q  121 atg 123  Q
    |||    
T  29024064 atg 29024066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 37695665 - 37695745
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || ||||||| |||| |||||||  ||  ||||||||||| | |||||||||||||||||    
T  37695665 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattaatatcatttactaaaacacccttattaattgtagtt 37695745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 37772963 - 37773042
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagt 103  Q
    |||||||| |||||||| || |||||||||  |||| |||||||  ||  ||||||||||||| ||||||||||| ||||    
T  37772963 ttattaaggaaatgattaattgtattgattacaatggtaaaattaatatcatttactaaaatacccttattaattatagt 37773042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 3901151 - 3901228
Alignment:
Q  27 ttaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||| || ||||| |||| ||||||||||||  ||  ||||||||||| |  ||||||| ||||||||    
T  3901151 ttaagaaaatgattaattgtattaatttcaatgataaaattaatatcatttactaaaacattcttattagttgtagtt 3901228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 44301654 - 44301601
Alignment:
Q  48 ttgattttaatgataaaattggtagtatttactaaaataaccttattaattgta 101  Q
    ||||||| |||||||||||| |||  ||||||||||||| |||||| |||||||    
T  44301654 ttgatttcaatgataaaattagtatcatttactaaaatacccttatcaattgta 44301601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 54726602 - 54726521
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||||||| |  || |||||||| ||| |||||||  ||  ||||||||||| | | |||||||||||||||    
T  54726602 gttattaagaaaatgattaaatgtgttgattttgatggtaaaattaatatcatttactaaaacatctttattaattgtagtt 54726521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 30711165 - 30711109
Alignment:
Q  48 ttgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||||||  ||  ||||||||||| | | |||||||||||||||    
T  30711165 ttgattttaatgataaaattaatatcatttactaaaacaccattattaattgtagtt 30711109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 6160464 - 6160541
Alignment:
Q  27 ttaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||| || || ||||||| |||||||||||| ||| ||||||||||||||  ||||||||||||||||    
T  6160464 ttaagaaaatgattaattgtgttgatttcaatgataaaattagtattatttactaaaatactcttattaattgtagtt 6160541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 7351728 - 7351652
Alignment:
Q  48 ttgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtttgtg---taattaagttgga 121  Q
    ||||||||||||||||||||  || |||||||||||||||||||||||||| ||||| |||   |||||||||||||    
T  7351728 ttgattttaatgataaaattaatattatttactaaaataaccttattaattctagttagtggaataattaagttgga 7351652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 35538756 - 35538679
Alignment:
Q  27 ttaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||| ||| || || ||||||| ||||||||||| | || |||||||||||||| |||||||||||||||||    
T  35538756 ttaagaaaattattaattgtgttgatttcaatgataaaatggatattatttactaaaatatccttattaattgtagtt 35538679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 39864227 - 39864147
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || ||||||| |||| ||||||| |||| |||||||||||||  ||||||||||||||||    
T  39864227 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaatactcttattaattgtagtt 39864147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 28749107 - 28749030
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgta 101  Q
    |||||||| |||||||| || || ||||||| |||| ||||||| |||| ||||||||||| | ||||||||||||||    
T  28749107 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacacccttattaattgta 28749030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 40144848 - 40144929
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||||||| || || |||||||| ||| |||||||  ||  ||||||||||| | |||||||||||||||||    
T  40144848 gttattaagaaaatgattaattgtgttgattttgatggtaaaattaatatcatttactaaaacacccttattaattgtagtt 40144929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 49223987 - 49224068
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||| ||||||||||||| || || |||||||| ||| ||||||| |||  ||||||||||| | |||||||||||||||||    
T  49223987 gttactaagaaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaacacccttattaattgtagtt 49224068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 23168995 - 23169075
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||| ||| || || ||||||| |||| ||||||| |||| ||||||||||| | ||||||||||| |||||    
T  23168995 ttattaagaaaataattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacatccttattaattatagtt 23169075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 26093510 - 26093430
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || ||||||| |||| |||||||  ||  ||||| ||||||| |||||||||||||||||    
T  26093510 ttattaagaaaatgattaattgtgttgatttcaatggtaaaattaatatcatttattaaaatatccttattaattgtagtt 26093430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 32970569 - 32970645
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgt 100  Q
    ||||||||||||||||| || || ||||||| ||||||||||||  || ||||||||||||||  | ||||||||||    
T  32970569 ttattaagaaaatgattaattgtgttgatttcaatgataaaattaatattatttactaaaatactcgtattaattgt 32970645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 3158016 - 3158059
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaat 66  Q
    |||||||||||||||||| ||| |||||||||||||||||||||    
T  3158016 gttattaagaaaatgattaataatattgattttaatgataaaat 3158059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 44707771 - 44707842
Alignment:
Q  33 aaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| ||  ||||||||| |||||||||||| |||||||||||||||| |   |||||||||||||||    
T  44707771 aaatgattaattatattgatttcaatgataaaattagtagtatttactaaaacacatttattaattgtagtt 44707842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 20209840 - 20209922
Alignment:
Q  22 cgttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||||| ||  | |||||||| ||  ||||||| |||  ||||||||||| | |||||||||||||||||    
T  20209840 cgttattaagaaaatgattaattatgttgattttgatagtaaaattagtatcatttactaaaacatccttattaattgtagtt 20209922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 8896337 - 8896414
Alignment:
Q  27 ttaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || ||||||| |||| |||||||  ||  |||||||||||||   |||||||||||||||    
T  8896337 ttaagaaaatgattgattgtgttgatttcaatggtaaaattaatatcatttactaaaatatatttattaattgtagtt 8896414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 15444482 - 15444543
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaa 84  Q
    ||||||||| |||||||| ||||| |||||||||||| ||||||  ||| ||||||||||||    
T  15444482 gttattaaggaaatgattaatagtgttgattttaatggtaaaatatgtattatttactaaaa 15444543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 9307743 - 9307663
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| |  || ||||||| ||||||||||||  ||| ||||||||||| | |||| ||||||||||||    
T  9307743 ttattaaggaaatgattaactgtgttgatttcaatgataaaattaatagcatttactaaaacacccttgttaattgtagtt 9307663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 16395049 - 16395128
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || |||||||| ||  ||||||| |||  |||||||||||| ||||| ||||||||||||    
T  16395049 ttattaagaaaatgattaattgtgttgattttgatagtaaaattagtatcatttactaaaat-acctttttaattgtagtt 16395128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 30754943 - 30755023
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || |||||||||| | |||||||  || |||||||||||||| | ||||||||| |||||    
T  30754943 ttattaaggaaatgattaattgtgttgattttaagggtaaaatttatattatttactaaaatatcattattaattatagtt 30755023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 41121836 - 41121907
Alignment:
Q  33 aaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| || || |||||||| ||| ||||||| | |  ||||||||||||| |||||||||||||||||    
T  41121836 aaatgattaattgtgttgattttgatggtaaaattagcataatttactaaaatacccttattaattgtagtt 41121907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 15699240 - 15699158
Alignment:
Q  23 gttattaagaaaa-tgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||| ||||| || || |||||||| ||| |||||||  ||  ||||||||||| | |||||||||||||||||    
T  15699240 gttattaagaaaaatgattaattgtgttgattttgatggtaaaattaatatcatttactaaaacacccttattaattgtagtt 15699158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 31042913 - 31042835
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtag 102  Q
    |||||||| |||||||| || || ||||||| |||| ||||||| |||  |||||||  |||| |||||||||||||||    
T  31042913 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtatcatttactgtaatacccttattaattgtag 31042835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 31154241 - 31154164
Alignment:
Q  27 ttaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||| ||||||||| || || |||||||||||||||||||| ||| ||| ||||||| |    |||||||||||||||    
T  31154241 ttaataaaatgattaattgtgttgattttaatgataaaattagtattatctactaaattgcatttattaattgtagtt 31154164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 36702034 - 36701957
Alignment:
Q  27 ttaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||| |||||||| ||  | ||||||| |||| ||||||| |||  ||||||||||||  |||||||||||||||||    
T  36702034 ttaaggaaatgattaattatgttgatttcaatggtaaaattagtatcatttactaaaatgcccttattaattgtagtt 36701957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 36718138 - 36718061
Alignment:
Q  27 ttaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||| |||||||| ||  | ||||||| |||| ||||||| |||  ||||||||||||  |||||||||||||||||    
T  36718138 ttaaggaaatgattaattatgttgatttcaatggtaaaattagtatcatttactaaaatgcccttattaattgtagtt 36718061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 42410111 - 42410030
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| ||||||||| || || |||||||| ||| |||||||  ||  ||||||||||  | |||||||||||||||||    
T  42410111 gttattaaaaaaatgattaattgtgttgattttgatggtaaaattaatatcatttactaaagcacccttattaattgtagtt 42410030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 45331458 - 45331377
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||| ||| ||  | |||||||| ||| |||||||  ||  ||||||||||| | |||||||||||||||||    
T  45331458 gttattaagaaaataattaattatgttgattttgatggtaaaattaatatcatttactaaaacacccttattaattgtagtt 45331377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 917116 - 917060
Alignment:
Q  48 ttgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||| |||| |||||||  ||  ||||||||||||| |||||||||||||||||    
T  917116 ttgatttaaatggtaaaattaatatcatttactaaaatacccttattaattgtagtt 917060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 4441605 - 4441685
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||| ||| || ||  ||||||||||| |||||||  | || |||||||||| | |||| ||||||||||||    
T  4441605 ttattaagaaaataattaattgtggtgattttaatggtaaaattaatcgtctttactaaaacacccttgttaattgtagtt 4441685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 12039198 - 12039118
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || ||||||| |||| ||||||| |||  ||||||||| | |  ||||||||||||||||    
T  12039198 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtaacatttactaatacactcttattaattgtagtt 12039118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 24991655 - 24991735
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || ||||||| || | |||||||  |||||||||||| || | | |||||||||||||||    
T  24991655 ttattaaggaaatgattaattgtgttgatttcaacggtaaaattaatagtatttactacaacacctttattaattgtagtt 24991735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 34031529 - 34031617
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtttgtgtaat 112  Q
    |||||||| ||||||||  | || ||||||  |||| |||||||  ||  ||||||||||||| | ||||||||||||||| |||||||    
T  34031529 ttattaaggaaatgattacttgtgttgattccaatggtaaaattaatatcatttactaaaataccgttattaattgtagttagtgtaat 34031617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 37276577 - 37276497
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| |  || |||||||| ||| ||||||| |||   |||||||||| | |||||||||||||||||    
T  37276577 ttattaaggaaatgattaactgtgttgattttgatggtaaaattagtatcgtttactaaaacacccttattaattgtagtt 37276497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 40530221 - 40530301
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || ||||||| |||| ||||||| |||| ||||||||||| | |||||||||||||||||    
T  40530221 ttattaagaaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacacccttattaattgtagtt 40530301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 6315774 - 6315854
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| ||||||||||| || || |||| ||||||||||||  ||  ||||||||||||| |||||||||||||||||    
T  6315774 ttattaaggaaatgattgattgtgttaatttcaatgataaaattaatatcatttactaaaatacccttattaattgtagtt 6315854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 11796169 - 11796250
Alignment:
Q  29 aagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtttgtgta 110  Q
    ||||||||| || || || ||||||||||||||||||||  || ||||||||||||||   ||||||||||||||| |||||    
T  11796169 aagaaaatggttaattgtgttgattttaatgataaaattaatattatttactaaaatattattattaattgtagttagtgta 11796250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 29374459 - 29374378
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||||||| ||  | ||||||| ||||||||||||  ||| ||||||||||| | | |||||||||||||||    
T  29374459 gttattaagaaaatgattaattatgttgatttcaatgataaaattaatagcatttactaaaagacctttattaattgtagtt 29374378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 6753656 - 6753735
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| ||  |||| |||| |||| ||||||| |||  ||||||||||||| |||||||||||||||||    
T  6753656 ttattaagaaaatgattaatt-tattaatttcaatggtaaaattagtatcatttactaaaatacccttattaattgtagtt 6753735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 7827923 - 7828003
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||| ||| || || ||||||| |||| ||||||| |||  ||||| ||||||| |||||||||||||||||    
T  7827923 ttattaagaaaataattaattgtgttgatttcaatggtaaaattagtatcatttattaaaatacccttattaattgtagtt 7828003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 27542911 - 27542831
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| ||||||||||| || ||||||| |||| |||||||  ||  |||||||||||||  ||||||||||||||||    
T  27542911 ttattaaggaaatgattgattgtgttgatttcaatggtaaaattaataccatttactaaaatactcttattaattgtagtt 27542831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 21060747 - 21060666
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||| | |||||||| || || || ||||| ||| ||||||| ||| ||||||||||||||  ||||||||||||||||    
T  21060747 gttattagggaaatgattaattgtgtttattttgatggtaaaattagtattatttactaaaatactcttattaattgtagtt 21060666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 40900035 - 40899954
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||| |||||||| || || |||||||| |||  |||||| |||  ||||||||||| | |||||||||||||||||    
T  40900035 gttattaaggaaatgattaattgtgttgattttgatggcaaaattagtatcatttactaaaacacccttattaattgtagtt 40899954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 4441113 - 4441057
Alignment:
Q  48 ttgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||||||  || ||||||||||||||   |||||||||||||||    
T  4441113 ttgattttaatgataaaattaatattatttactaaaatatttttattaattgtagtt 4441057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 4818667 - 4818587
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||| ||| || || ||||||| |||  ||||||| |||| ||||||||||| | |||||||||||||||||    
T  4818667 ttattaaggaaataattaattgtgttgatttcaattgtaaaattagtagcatttactaaaacacccttattaattgtagtt 4818587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 29570508 - 29570428
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||  |||||||| || || |||||||||||| |||||||  |||||||| |||||| | | |||||||||||||||    
T  29570508 ttattaaagaaatgattaattgtgttgattttaatgttaaaattattagtatttgctaaaacacctttattaattgtagtt 29570428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 41062181 - 41062237
Alignment:
Q  48 ttgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| ||||||||||| |||  ||||||||||| | |||||||||||||||||    
T  41062181 ttgattttgatgataaaattagtatcatttactaaaacacccttattaattgtagtt 41062237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 27580707 - 27580636
Alignment:
Q  33 aaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| || || ||||||| |||| |||||||  ||  ||||||||||||| |||||||||||||||||    
T  27580707 aaatgattaattgtgttgatttcaatggtaaaattaatatcatttactaaaatacccttattaattgtagtt 27580636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 9515862 - 9515784
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtag 102  Q
    ||||||||| ||||||| || || ||||||| |||| ||||||| |||  ||||||||||| | |||||||||| ||||    
T  9515862 ttattaagataatgattaattgtgttgatttcaatggtaaaattagtatcatttactaaaacatccttattaatagtag 9515784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 1248600 - 1248681
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||| |||| ||| ||  | ||||||| |||| |||||||  ||  ||||||||||||| |||||||||||||||||    
T  1248600 gttattaaggaaattattaattatgttgatttcaatggtaaaattaatatcatttactaaaatacccttattaattgtagtt 1248681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 5731892 - 5731812
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || || |||||||| | |||||  |||  ||||||||||| | |||||||||| ||||||    
T  5731892 ttattaagaaaatgattaattgtgttcattttaataacaaaatgtgtatcatttactaaaacatccttattaatcgtagtt 5731812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 8698425 - 8698345
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||  |||||||| || || ||||||| |||| ||||||| || | |||||| |||| | |||||||||||||||||    
T  8698425 ttattaaagaaatgattaattgtgttgatttcaatggtaaaattagttgcatttaccaaaacacccttattaattgtagtt 8698345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 31655169 - 31655089
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||  |||||||| || || ||||||| |||| |||||||  ||  |||||||| |||| |||||||||||||||||    
T  31655169 ttattaaagaaatgattaattgtgttgatttcaatggtaaaattaatatcatttactataatatccttattaattgtagtt 31655089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 32440248 - 32440180
Alignment:
Q  33 aaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgta 101  Q
    |||||||| || || || |||| ||||||||||||  ||  ||||||||||||| ||||||||||||||    
T  32440248 aaatgattaattgtgttaatttcaatgataaaattaatatcatttactaaaatacccttattaattgta 32440180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 31082733 - 31082655
Alignment:
Q  26 attaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||| |||||||| || || |||||||||||||||||||| || ||||||||||||| | ||||||||||| |||||    
T  31082733 attaaggaaatgattaattgtcttgattttaatgataaaattagtggtatttactaaaacacccttattaattatagtt 31082655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 31331521 - 31331422
Alignment:
Q  27 ttaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtttgt---gtaattaagttggatg 123  Q
    ||||| |||||||| || |||||||||| ||| ||||||||  || |||||||||||||| | ||||||||||||||| ||   ||||||||||||||||    
T  31331521 ttaaggaaatgattaattgtattgatttcaattataaaattattattatttactaaaatatcattattaattgtagttagtgaagtaattaagttggatg 31331422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 32476404 - 32476323
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||||||||||  | ||||||| ||||||||||||  ||  ||||| ||||||| |||||||||||||||||    
T  32476404 gttattaagaaaatgattgattctgttgatttcaatgataaaattaatatcatttattaaaatacccttattaattgtagtt 32476323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 1875592 - 1875672
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || ||||||| |||| ||||||| |||| ||||||||||| | |||||||||||||||||    
T  1875592 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacacccttattaattgtagtt 1875672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 9300113 - 9300193
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||||||| | || |||||||||||| |||||||  ||| ||||||||||| | ||||||||||| |||||    
T  9300113 ttattaagaaaatgattgtttgtgttgattttaatggtaaaattaatagcatttactaaaacacccttattaattttagtt 9300193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 17719258 - 17719338
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||| ||||||||| || ||| ||||||||||| |||| || ||| |||||||||||||| ||||||||||| |||||    
T  17719258 ttattaaaaaaatgattaattgtaatgattttaatggtaaagttagtattatttactaaaatatccttattaattatagtt 17719338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 10097990 - 10098071
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||||||| || ||||||||||| ||| |||||||  ||  |||||||| || | |||||||||||||||||    
T  10097990 gttattaagaaaatgattaattgtattgattttgatggtaaaattaatatcatttactataacacccttattaattgtagtt 10098071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 10179947 - 10180027
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||| |  | |||||||||| |||| ||||||| |||  |||||||||||||  ||||||||||||||||    
T  10179947 ttattaagaaaatgagtagttgtattgatttcaatggtaaaattagtataatttactaaaatacacttattaattgtagtt 10180027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 21216101 - 21216181
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || ||||||| |||| ||||||| || | ||||||||||| | |||||||||||||||||    
T  21216101 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagttgcatttactaaaacatccttattaattgtagtt 21216181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 31271137 - 31271057
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||||||||| || |||||||||||| |||||||  ||  || ||||||||||  |||||||||| |||||    
T  31271137 ttattaagaaaatgattgattgtgttgattttaatggtaaaattaatatcatatactaaaatactcttattaattatagtt 31271057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 39482731 - 39482651
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || ||||||| || | ||||||| |||| ||||||||||| | ||||||||||| |||||    
T  39482731 ttattaagaaaatgattaattgtgttgatttcaagggtaaaattagtagaatttactaaaacacccttattaattatagtt 39482651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 44761503 - 44761574
Alignment:
Q  33 aaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| || || ||||||| |||| ||||||| |||| ||||||||||| | |||||||||||||||||    
T  44761503 aaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacacccttattaattgtagtt 44761574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 396605 - 396691
Alignment:
Q  18 tagtcgttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||| |||||||| ||  | ||||||| || | ||||||| |||  |||||||| |||| |||||||||||||||||    
T  396605 tagtcgttattaaggaaatgattaattatgttgatttcaacggtaaaattagtatcatttactacaatatccttattaattgtagtt 396691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 4428354 - 4428431
Alignment:
Q  27 ttaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||  | || ||||||||||||||||||||  ||  |||||||||||||   |||||||||||||||    
T  4428354 ttaagaaaatgattatttgtgttgattttaatgataaaattattatcatttactaaaatacaattattaattgtagtt 4428431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 4924094 - 4924147
Alignment:
Q  51 attttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||| ||||||| ||| |||||||||||||| | |||||||||||||||    
T  4924094 attttaatggtaaaattagtattatttactaaaatatctttattaattgtagtt 4924147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 7173030 - 7172950
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||  |||||||| || || ||||||| |||||||||||| |||| ||||||||||| |   |||||||||||||||    
T  7173030 ttattaaagaaatgattaattgtgttgatttcaatgataaaattagtagcatttactaaaacatatttattaattgtagtt 7172950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 26626112 - 26626192
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || |||| ||| ||| ||||||| |||  ||||| ||||||| |||||||||||||||||    
T  26626112 ttattaaggaaatgattaattgtgttgaatttgatggtaaaatttgtataatttattaaaatatccttattaattgtagtt 26626192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 36006911 - 36006967
Alignment:
Q  48 ttgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||||||  || |||| ||||||||| || ||||||||||||||    
T  36006911 ttgattttaatgataaaattaatattattgactaaaatatccctattaattgtagtt 36006967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 42972508 - 42972588
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || ||||||| |||| |||||||  ||   |||||||||||| ||||||||||| |||||    
T  42972508 ttattaagaaaatgattaattgttttgatttcaatggtaaaattaatatcgtttactaaaatacccttattaattatagtt 42972588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 45425666 - 45425746
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || |||||||||||| |||||||  ||  ||||| ||||| |  ||||||||||||||||    
T  45425666 ttattaagaaaatgattaattgtgttgattttaatggtaaaattaataacatttattaaaacattcttattaattgtagtt 45425746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 34393953 - 34394034
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||| |||||||| || || |||||||| ||| ||||||| |||  ||||||||||| | | ||||||||| |||||    
T  34393953 gttattaaggaaatgattaattgtgttgattttgatggtaaaattagtataatttactaaaacacctttattaattatagtt 34394034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 11976960 - 11977016
Alignment:
Q  48 ttgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||| |||| || |||  |||| ||||||||||||| |||||||||||||||||    
T  11976960 ttgatttcaatggtataatcagtagcatttactaaaatacccttattaattgtagtt 11977016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 41687400 - 41687436
Alignment:
Q  30 agaaaatgattgatagtattgattttaatgataaaat 66  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  41687400 agaaaatgattaataatattgattttaatgataaaat 41687436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 7463337 - 7463256
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||| |||||||| || || ||||||| |||||||||||| |||| ||||||| ||||| ||| |||||||||||||    
T  7463337 gttattaaggaaatgattaattgtgttgatttcaatgataaaattagtagcatttacttaaataccctcattaattgtagtt 7463256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 24516295 - 24516375
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||| ||||||||| || || ||||||| |||| ||||||| |||  ||||||||||| |||||||||||||||||||    
T  24516295 ttattaataaaatgattaattgtgttgatttcaatggtaaaattagtaacatttactaaaaaaaccttattaattgtagtt 24516375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 34100553 - 34100633
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || ||||||| |||  ||||||| |||| ||||||||||||| | |||||||||||||||    
T  34100553 ttattaagaaaatgattaattgtgttgatttcaatagtaaaattagtagcatttactaaaatatctttattaattgtagtt 34100633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 42935785 - 42935704
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||||||| || || |||||||| ||| |||||||  ||  ||||||||||| | |||||||||||||||||    
T  42935785 gttattaagaaaatgattaattgtgttgattttgatggtaaaattaatatcatttactaaaacacccttattaattgtagtt 42935704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 28103856 - 28103776
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || ||||||| |||| ||||||| | || |||||| |||| | |||||||||||||||||    
T  28103856 ttattaagaaaatgattaattgtgttgatttcaatggtaaaattagcagcatttaccaaaacacccttattaattgtagtt 28103776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 38391871 - 38391769
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtttgtg---taattaagttgg 120  Q
    ||||||||||||||||| || || |||||||| ||| ||||||| |||  ||||||||||| |  ||| |||||||||||| |||   ||||||||||||    
T  38391871 ttattaagaaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaacactcttgttaattgtagttagtggaataattaagttgg 38391772  T
Q  121 atg 123  Q
    |||    
T  38391771 atg 38391769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 41506071 - 41506151
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || || ||||||||| ||||||| |||| ||||||||||| |  ||||||||||||||||    
T  41506071 ttattaaggaaatgattaattgtgttaattttaatggtaaaattagtagcatttactaaaacactcttattaattgtagtt 41506151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 2850887 - 2850973
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtttgtgta 110  Q
    |||||||| |||||||| ||  | ||||||| ||||||||||||  || |||||||||||||| ||| ||||||| ||||| |||||    
T  2850887 ttattaaggaaatgattaattatgttgatttcaatgataaaattaatattatttactaaaataccctcattaattatagttagtgta 2850973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 27921112 - 27921031
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||||||| ||  | |||||||||||| ||||||| |||  ||||| ||||| |  ||||||||||||||||    
T  27921112 gttattaagaaaatgattaattatgttgattttaatggtaaaattagtatcatttattaaaacactcttattaattgtagtt 27921031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 83508 - 83428
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || |||||||| ||| ||||||| |||  ||||||||||| |  ||||||||||||||||    
T  83508 ttattaaggaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaacattcttattaattgtagtt 83428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 759097 - 759177
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || |||||||| ||| ||||| | |||  ||||||||||| | |||||||||||||||||    
T  759097 ttattaaggaaatgattaattgtgttgattttgatggtaaaactagtatcatttactaaaacatccttattaattgtagtt 759177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 3178210 - 3178290
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| ||||||||||| || |||||||| ||| |||||||  ||  ||||||||||| | | |||||||||||||||    
T  3178210 ttattaagtaaatgattgattgtgttgattttgatggtaaaattaatatcatttactaaaacacctttattaattgtagtt 3178290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 8592446 - 8592526
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||  |||||||| || || ||||||| |||| | ||||| |||||||||| ||||| | |||||||||||||||||    
T  8592446 ttattaaagaaatgattaattgtgttgatttcaatggttaaattagtagtatttaataaaacacccttattaattgtagtt 8592526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 11373434 - 11373514
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| ||||| || || || |||||||  ||| ||||||| |||| ||||||||||| | |||||||||||||||||    
T  11373434 ttattaaggaaatgtttaattgtgttgatttcgatggtaaaattagtagcatttactaaaacacccttattaattgtagtt 11373514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 12631428 - 12631348
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||| ||| || |||||||||| |||  ||||||| ||||||||||  |||| | |||||||||||||||||    
T  12631428 ttattaaggaaataattaattgtattgatttcaatagtaaaattagtagtatttatcaaaacatccttattaattgtagtt 12631348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 13962082 - 13962002
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || ||||||||||||||||||||  ||  | ||| ||||||| ||||||||| |||||||    
T  13962082 ttattaaggaaatgattaattgtgttgattttaatgataaaattaatatcacttaataaaatatccttattaagtgtagtt 13962002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 21759990 - 21760070
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || |||||||| ||| ||||||| |||  ||||| ||||| | ||||| |||||||||||    
T  21759990 ttattaagaaaatgattaattgtgttgattttgatggtaaaattagtatcatttaataaaacacccttactaattgtagtt 21760070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 46478299 - 46478379
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||  |||||||| || || || ||||||||  |||| || |||| ||||||||||||| |||||||||||||||||    
T  46478299 ttattaattaaatgattaattgtgttaattttaatagtaaagttagtagcatttactaaaatacccttattaattgtagtt 46478379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 28202314 - 28202395
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||| ||| || || |||||||| ||| |||||||  |   ||||||||||| | |||||||||||||||||    
T  28202314 gttattaagaaaataattaattgtgttgattttgatggtaaaattaatgtcatttactaaaacatccttattaattgtagtt 28202395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 33819337 - 33819253
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataac-cttattaattgtagtttgtg 108  Q
    |||||||| |||||||| || || ||||||| |||| ||||||| |||| |||||| ||||| || |||||||||||| |||||||    
T  33819337 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttac-aaaatcactcttattaattgttgtttgtg 33819253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 39452443 - 39452390
Alignment:
Q  48 ttgattttaatgataaaattggtagtatttactaaaataaccttattaattgta 101  Q
    |||||||||||| |||||||  ||  ||||||||||||| ||||||||||||||    
T  39452443 ttgattttaatggtaaaattaatatcatttactaaaatacccttattaattgta 39452390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 16560576 - 16560656
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || || ||||| ||| ||||| | |||  ||||||||||| | |||||||||||||||||    
T  16560576 ttattaaggaaatgattaattgtgtttattttgatggtaaaactagtatcatttactaaaacatccttattaattgtagtt 16560656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 16605086 - 16605006
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || || ||||| ||| ||||| | |||  ||||||||||| | |||||||||||||||||    
T  16605086 ttattaaggaaatgattaattgtgtttattttgatggtaaaactagtatcatttactaaaacatccttattaattgtagtt 16605006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 19271739 - 19271819
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||| ||||||||| || || ||||||| |||||| ||||| || | ||| |||||||||   |||||||||||||||    
T  19271739 ttattaaaaaaatgattaattgtgttgatttcaatgatcaaattagtggcattgactaaaatacttttattaattgtagtt 19271819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 21350655 - 21350711
Alignment:
Q  48 ttgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||| |||| ||||| | || ||||||||||||| | |||||||||||||||||    
T  21350655 ttgatttcaatggtaaaaatagttgtatttactaaaacacccttattaattgtagtt 21350711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 22738824 - 22738744
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||  |||||||| || || | ||||| |||| ||||||| |||  ||||||||||||| ||| |||||||||||||    
T  22738824 ttattaaagaaatgattaattgtgtagatttcaatggtaaaattagtatcatttactaaaatatcctcattaattgtagtt 22738744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 29835420 - 29835500
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| ||  | ||||||| |||| ||||||| |||| ||||||||||| |  ||||||||||| ||||    
T  29835420 ttattaaggaaatgattaattatgttgatttaaatggtaaaattagtagcatttactaaaacactcttattaattgcagtt 29835500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 34947623 - 34947543
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||  |||||||| || || ||||||| |||| |||||||  ||  ||||||||||| | |||||||||||||||||    
T  34947623 ttattaaagaaatgattaattgtgttgatttcaatggtaaaattattatcatttactaaaacacccttattaattgtagtt 34947543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 44180328 - 44180268
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaa 84  Q
    ||||||||||||||||| || || ||||||| |||| ||||||| |||  |||||||||||    
T  44180328 ttattaagaaaatgattaattgtgttgatttcaatggtaaaattagtataatttactaaaa 44180268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 49175942 - 49176019
Alignment:
Q  27 ttaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||| || ||   ||||| |||||||||||| |||  |||||||||||||||||||||||||||||||    
T  49175942 ttaagaaaatgattaattgtggagatttcaatgataaaattagtatcatttactaaaataaccttattaattgtagtt 49176019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 35380338 - 35380418
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| ||  | |||||||||||| ||||||| |||| ||||||||||| | | |||||||||||||||    
T  35380338 ttattaagaaaatgattaattatgttgattttaatggtaaaattagtagcatttactaaaacatcattattaattgtagtt 35380418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 5841433 - 5841512
Alignment:
Q  25 tattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||| ||||||||||| |  |||||||||||| |||||||  ||  ||||||||||||| |||||||||||||||||    
T  5841433 tattaaggaaatgattgattgcgttgattttaatggtaaaattaatatcatttactaaaatacccttattaattgtagtt 5841512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 462071 - 461997
Alignment:
Q  27 ttaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgta 101  Q
    |||||||||||||| || |||||||||| |||| ||||| |  || |||||||||||||| ||||||||||||||    
T  462071 ttaagaaaatgattaattgtattgatttcaatggtaaaagtaatattatttactaaaatatccttattaattgta 461997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 17114557 - 17114476
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||| |||||||| || || |||||||| ||| ||||||| |||  ||||||||||| | |||||||||||||||||    
T  17114557 gttattaaggaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaacacccttattaattgtagtt 17114476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 6643665 - 6643745
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || ||||||| |||| ||||||| |||| ||||||||||| | | |||||||||||||||    
T  6643665 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacatctttattaattgtagtt 6643745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 11907604 - 11907684
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || |||||||| ||| ||||||| |||  ||||||||||| | |||||||||||||||||    
T  11907604 ttattaaggaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaacacccttattaattgtagtt 11907684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 17237301 - 17237381
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||| ||| || || ||||||  |||| ||||||| |||  ||||||||||| |||||||||||||||||||    
T  17237301 ttattaagaaaataattaattgtgttgattgcaatggtaaaattagtaacatttactaaaacaaccttattaattgtagtt 17237381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 28500896 - 28500976
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| ||||||||||| || ||||||| |||| |||||||  ||  ||||||||||||| |||||||||||| ||||    
T  28500896 ttattaaggaaatgattgattgtgttgatttcaatggtaaaattaatatcatttactaaaatacccttattaattgcagtt 28500976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 34360771 - 34360691
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||  |||||||| || |||||||||| |||| ||||||| |||| ||||||||||| |  ||||||||||||||||    
T  34360771 ttattaaagaaatgattaattgtattgatttcaatggtaaaattagtagcatttactaaaacactcttattaattgtagtt 34360691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 40122859 - 40122939
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || |  |||||||||||| ||||||| |||| ||||||||||| | ||||||| |||||||||    
T  40122859 ttattaaggaaatgattaattgcgttgattttaatgttaaaattagtagcatttactaaaacacccttattgattgtagtt 40122939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 44536201 - 44536281
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || |||||||||||| ||||||| | || ||||| ||||| | |||||||||||||||||    
T  44536201 ttattaaggaaatgattaattgtgttgattttaatggtaaaattagcaggatttattaaaacacccttattaattgtagtt 44536281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 47464370 - 47464450
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || ||||||| |||| ||||||| |||| ||||||||||| |  ||||||||||||||||    
T  47464370 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaaaactcttattaattgtagtt 47464450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 49428347 - 49428449
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtttgt---gtaattaagttgg 120  Q
    |||||||| ||||||||  | || ||||||| |||| |||||||  ||  ||||||||||||| ||||||||||||||||| ||   |||||||||||||    
T  49428347 ttattaaggaaatgattatttgtgttgatttcaatggtaaaattaatataatttactaaaatacccttattaattgtagttagtggagtaattaagttgg 49428446  T
Q  121 atg 123  Q
    |||    
T  49428447 atg 49428449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 52247433 - 52247513
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || || |||| |||| |||||||  ||  ||||||||||||| |||||||||||||||||    
T  52247433 ttattaagaaaatgattaattgtgttaatttcaatggtaaaattaatacaatttactaaaatatccttattaattgtagtt 52247513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 52859804 - 52859884
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || |||||||| ||| ||||||| |||  ||||||||||| | |||||||||||||||||    
T  52859804 ttattaaggaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaacatccttattaattgtagtt 52859884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 3098826 - 3098757
Alignment:
Q  32 aaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgta 101  Q
    ||||||||| ||  ||||||||| ||||||||||||| ||  ||||||||||||| | ||||||||||||    
T  3098826 aaaatgattaattatattgatttcaatgataaaattgatatcatttactaaaatatctttattaattgta 3098757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 19265925 - 19265844
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||||||| ||  |||| |||| ||| ||||||||  |  |||||| ||||||||||||||||||| |||||    
T  19265925 gttattaagaaaatgattaattatatttatttcaataataaaattaatgttatttattaaaataaccttattaattatagtt 19265844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 47773023 - 47773104
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||| |||| ||| || || |||||||| ||| ||||||| |||  ||||||||||| | |||||||||||||||||    
T  47773023 gttattaaggaaataattaattgtgttgattttgatggtaaaattagtatcatttactaaaacacccttattaattgtagtt 47773104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 2942650 - 2942729
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||  |||||||| || || |||||||  ||||||||||| |||| |||||||||||  ||||||||||||||||||    
T  2942650 ttattaaagaaatgattaattgtgttgatttcgatgataaaattagtagcatttactaaaa-caccttattaattgtagtt 2942729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 7061669 - 7061749
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || ||||||| |||| ||||||| |||  |||||||| |||| | |||||||||||||||    
T  7061669 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtatcatttactataatatctttattaattgtagtt 7061749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 11288635 - 11288714
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || |||||||||| ||||  ||||||  ||  |||||||||||| | ||||||||||||||||    
T  11288635 ttattaagaaaatgattaattgtattgatttcaatggcaaaattaatatcatttactaaaat-atcttattaattgtagtt 11288714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 32884917 - 32884837
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || ||||||| |||| || |||| |||| ||||| ||||| |  ||||||||||||||||    
T  32884917 ttattaagaaaatgattaattgtgttgatttcaatggtagaattagtagcatttagtaaaacactcttattaattgtagtt 32884837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 33790736 - 33790816
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || |||||||| ||| ||||||| ||   |||| |||||| | |||||||||||||||||    
T  33790736 ttattaagaaaatgattaattgtgttgattttgatggtaaaattagtttcatttgctaaaacacccttattaattgtagtt 33790816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 38405107 - 38405187
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| ||  | ||||||| |||| |||||||  ||  ||||||||||||| |||||||||||||||||    
T  38405107 ttattaaggaaatgattaattctgttgatttaaatggtaaaattaatatcatttactaaaatacccttattaattgtagtt 38405187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 42517643 - 42517723
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || ||||||| |||| |||||||   |  ||||||||||||| ||||||||||| |||||    
T  42517643 ttattaagaaaatgattaattgtgttgatttcaatggtaaaattaagatcatttactaaaatacccttattaattatagtt 42517723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 49747053 - 49746997
Alignment:
Q  48 ttgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||| |||||||||||| |||||||||||||||||| | | ||||||| |||||    
T  49747053 ttgatttcaatgataaaattagtagtatttactaaaataccttcattaattatagtt 49746997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 36985893 - 36985822
Alignment:
Q  33 aaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| || || ||||||| |||| ||||||| |||  ||||||||||||| || ||||||||||||||    
T  36985893 aaatgattaattgtgttgatttcaatggtaaaattagtatcatttactaaaatacccgtattaattgtagtt 36985822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 16821346 - 16821416
Alignment:
Q  34 aatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||| || || ||||||| |||||||||||| |||  |||||||| |||| ||||||||||| |||||    
T  16821346 aatgattaattgtgttgatttcaatgataaaattagtatcatttactataatatccttattaattatagtt 16821416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 17121358 - 17121316
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaat 66  Q
    |||||||||||||||||| || | |||||||||||||||||||    
T  17121358 ttattaagaaaatgattggtattgttgattttaatgataaaat 17121316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 46396890 - 46396968
Alignment:
Q  26 attaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||| |||||||| || || ||||||| |||| |||||||  ||| ||||||||||| |  ||||||||||||||||    
T  46396890 attaagtaaatgattaattgtgttgatttcaatggtaaaattaatagcatttactaaaacactcttattaattgtagtt 46396968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 3689679 - 3689598
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||  |||||||| || ||||||||||| ||| ||||||| |||  ||||||||||| |  |||||||||| |||||    
T  3689679 gttattaaagaaatgattaattgtattgattttgatggtaaaattagtatcatttactaaaacactcttattaattatagtt 3689598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 53412221 - 53412140
Alignment:
Q  27 ttaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtttgtg 108  Q
    ||||||||| |||| ||  ||||||||| |||| ||||||| |||  |||||||||||||   ||||||||| |||||||||    
T  53412221 ttaagaaaacgattaattttattgatttcaatggtaaaattagtatcatttactaaaatatttttattaattatagtttgtg 53412140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 2066905 - 2066825
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || |||||||| ||| |||| || ||| |||||| ||||| | ||||||||||| |||||    
T  2066905 ttattaaggaaatgattaattgtgttgattttgatggtaaagttagtattatttattaaaacacccttattaattttagtt 2066825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 21240709 - 21240789
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| |  || |||||||| ||| ||||||| |||  ||||||||| | | |||||||||||||||||    
T  21240709 ttattaaggaaatgattaactgtgttgattttgatggtaaaattagtatcatttactaacacatccttattaattgtagtt 21240789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 123
Target Start/End: Original strand, 26147644 - 26147722
Alignment:
Q  48 ttgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtttgt---gtaattaagttggatg 123  Q
    |||||||| ||| ||||||| |||  ||||||||||| |  |||||||||||||||| ||   ||||||||||||||||    
T  26147644 ttgattttgatggtaaaattagtatcatttactaaaacattcttattaattgtagttagtggagtaattaagttggatg 26147722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 43237359 - 43237279
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || || |||| |||| ||||||| ||| |||||||||||| | | ||||||||| |||||    
T  43237359 ttattaaggaaatgattaattgtgtttatttcaatggtaaaattagtaatatttactaaaaaatcattattaattatagtt 43237279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 51625199 - 51625139
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaa 84  Q
    ||||||||||||||||| || || ||||||| |||| ||||||| |||  |||||||||||    
T  51625199 ttattaagaaaatgattaattgtgttgatttcaatggtaaaattagtaacatttactaaaa 51625139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 53346875 - 53346795
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||| |||||| || ||  ||| |||| |||||||  ||| ||||||||||| | ||||||||||| |||||    
T  53346875 ttattaagaaaataattgattgtgttagtttcaatggtaaaattaatagcatttactaaaacacccttattaattttagtt 53346795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 16214 - 16134
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || ||||||||||||||||||||  ||| ||||||||||| |  ||||||||||||||||    
T  16214 ttattaaggaaatgattaattgtgttgattttaatgataaaattaatagcatttactaaaacacacttattaattgtagtt 16134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 3291766 - 3291846
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || |||| |||||||||| ||| ||| ||| |||||||||||||| | |||||||||||||||    
T  3291766 ttattaaggaaatgattaattgtatcgattttaatggtaatattagtattatttactaaaatacctttattaattgtagtt 3291846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 1063604 - 1063681
Alignment:
Q  27 ttaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||| || || ||||||| |||||||||||| ||| ||||||||||||||  || | |||||||||||    
T  1063604 ttaagaaaatgattaattgtgttgatttcaatgataaaattagtattatttactaaaatactctgagtaattgtagtt 1063681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 11655943 - 11656024
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||||||| || || |||||||| ||| ||||||| ||   ||||||||||| | |||||||||||||||||    
T  11655943 gttattaagaaaatgattaattgtgttgattttgatggtaaaattagtgtcatttactaaaacacccttattaattgtagtt 11656024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 29363422 - 29363342
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || |||||||| ||| ||||| | |||  ||||||||||| | |||||||||||||||||    
T  29363422 ttattaagaaaatgattaattgtgttgattttgatggtaaaactagtatcatttactaaaacatccttattaattgtagtt 29363342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 31894208 - 31894288
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || ||||||| |||| ||||||| |||| |||||||||||   | |||||||||||||||    
T  31894208 ttattaagaaaatgattaattgtgttgatttcaatggtaaaattagtagcatttactaaaacgtcattattaattgtagtt 31894288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 34300087 - 34300035
Alignment:
Q  48 ttgattttaatgataaaattggtagtatttactaaaataaccttattaattgt 100  Q
    ||||||| |||||||||||| ||| |||||||||||||| |||||||||||||    
T  34300087 ttgatttgaatgataaaattagtattatttactaaaatatccttattaattgt 34300035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 1955979 - 1956057
Alignment:
Q  26 attaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||| |||| || |||||||||| |||| ||||||| |||  ||||||||| |||  ||||||||||||||||    
T  1955979 attaagaaaaagattaattgtattgatttcaatggtaaaattagtatcatttactaatatactcttattaattgtagtt 1956057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 23142783 - 23142705
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtag 102  Q
    ||||||||||||||||| || || ||||||| |||| ||||| | || | ||||||||||| | |||||||||||||||    
T  23142783 ttattaagaaaatgattaattgtgttgatttcaatggtaaaaatagtggcatttactaaaacacccttattaattgtag 23142705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 32440642 - 32440720
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgta 101  Q
    |||||| || |||||||| || || |||||||| ||| ||||||| ||| |||||||||||| | ||||||||||||||    
T  32440642 gttatttaggaaatgattaattgtgttgattttgatggtaaaattagtattatttactaaaacacccttattaattgta 32440720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 1781915 - 1781838
Alignment:
Q  27 ttaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||| ||  | ||||| | |||| ||||||| |||| ||||||||||| | |||||||||||||||||    
T  1781915 ttaagaaaatgattaattatgttgatctcaatggtaaaattagtagcatttactaaaacacccttattaattgtagtt 1781838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 3720239 - 3720319
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||  |||||||| || || ||||||| ||| |||||||| ||||||||||| |||| |  ||||||||||||||||    
T  3720239 ttattaatgaaatgattaattgtgttgatttcaattataaaatttgtagtatttacaaaaacactcttattaattgtagtt 3720319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 13087646 - 13087544
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtttgt---gtaattaagttgg 120  Q
    ||||||||||| ||||| || || ||||||| |||| |||||||  ||  ||||||||||| | ||||||||||| ||||| ||   |||||||||||||    
T  13087646 ttattaagaaagtgattaattgtgttgatttcaatggtaaaattaatatcatttactaaaacatccttattaattatagttagtgaagtaattaagttgg 13087547  T
Q  121 atg 123  Q
    |||    
T  13087546 atg 13087544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 13909540 - 13909460
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| |  || ||||||| |||| ||||||| ||   ||||||||||||| |||||||||||||||||    
T  13909540 ttattaaggaaatgattaaatgtgttgatttcaatggtaaaattagtgacatttactaaaatacccttattaattgtagtt 13909460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 15058233 - 15058153
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| ||    || |||| |||| ||||||| || | ||||||||||||| |||||||||||||||||    
T  15058233 ttattaagaaaatgattaattaagttaatttcaatggtaaaattagtggcatttactaaaatacccttattaattgtagtt 15058153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 21018875 - 21018815
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaa 84  Q
    |||||||| ||||||||  || |||||||||||||||||||||  ||| ||||||||||||    
T  21018875 ttattaaggaaatgattactactattgattttaatgataaaatatgtattatttactaaaa 21018815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 12438782 - 12438824
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaat 66  Q
    ||||||||||||||||  |||||||||||||||||| ||||||    
T  12438782 ttattaagaaaatgatgaatagtattgattttaatggtaaaat 12438824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 5302468 - 5302387
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||||||| |  || |||||||| ||| |||||||  ||  |||||| |||| | |||||||||||||||||    
T  5302468 gttattaagaaaatgattaaatgtgttgattttgatggtaaaattaatataatttaccaaaacatccttattaattgtagtt 5302387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 6802048 - 6801967
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||||||||||| ||  | |||||||| ||| |||||||  ||  |||||||||||   |||||||||||||||||    
T  6802048 gttattaagaaaatgattaattatgttgattttgatggtaaaattaatatcatttactaaaacgcccttattaattgtagtt 6801967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 27448154 - 27448231
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgta 101  Q
    |||||||| |||||||| || || |||||||| ||||| ||||| |||  ||||||||||| | | ||||||||||||    
T  27448154 ttattaaggaaatgattaattgtgttgattttgatgatgaaattagtatcatttactaaaacatcattattaattgta 27448231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 30717017 - 30716936
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||| |||||||| ||  |||||| ||| ||| ||||||| |||  ||||||| ||| | |||||||||||||||||    
T  30717017 gttattaaggaaatgattaattttattgactttgatggtaaaattagtatcatttacttaaacacccttattaattgtagtt 30716936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 181671 - 181592
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||| ||||| ||| || |||||||||| |||  ||||||| |||||||||||||||| | | ||||||||| |||||    
T  181671 ttattaaaaaaat-attaattgtattgatttcaatagtaaaattagtagtatttactaaaacatcattattaattatagtt 181592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 12340075 - 12340035
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaa 64  Q
    |||||||||||||||||  |||| |||||||||||||||||    
T  12340075 ttattaagaaaatgattagtagtgttgattttaatgataaa 12340035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 17835492 - 17835398
Alignment:
Q  32 aaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtttgt---gtaattaagttggatg 123  Q
    ||||| ||| || |||||||||||||| ||||||||  |   |||||||||||||   ||||||||||||||||||   ||| ||||||||||||    
T  17835492 aaaataattaattgtattgattttaataataaaattaatctcatttactaaaatacatttattaattgtagtttgtttagtagttaagttggatg 17835398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 21010293 - 21010213
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || || ||||| |||  |||||| |||  ||||||||||| | |||||| ||||||||||    
T  21010293 ttattaagaaaatgattaattgtgttaattttgatggaaaaattagtatcatttactaaaacacccttataaattgtagtt 21010213  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 26592438 - 26592358
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| ||| |||||||||||||| ||||||  |||  ||||||||| ||| |||| || ||| |||||    
T  26592438 ttattaaggaaatgattaataatattgattttaatggtaaaatgtgtatcatttactaatatacccttgtttattatagtt 26592358  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 8947049 - 8947129
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || ||||||| |||||||||||| ||| |||||||||||| | ||||||||||| |||||    
T  8947049 ttattaaggaaatgattaattgtgttgatttcaatgataaaattagtaatatttactaaaacatccttattaattatagtt 8947129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 35314003 - 35313923
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || ||||||| |||| ||||||| |||||||||| ||||  |||||||||||||||||||    
T  35314003 ttattaaggaaatgattaattgtgttgatttcaatggtaaaattagtagtatttattaaagcaaccttattaattgtagtt 35313923  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 15359083 - 15359164
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||| |||||| || || |||||||| |||||||||||  ||  ||||||||||| | |||||||||||||||||    
T  15359083 gttattaagaagatgattaattgtgttgattttgatgataaaattaatatcatttactaaaacacccttattaattgtagtt 15359164  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 16463806 - 16463725
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||| |||||||| || || |||||||| ||| ||||||| |||  ||||||||||| | |||||||||||||||||    
T  16463806 gttattaaggaaatgattaattgtgttgattttgatggtaaaattagtatcatttactaaaacacccttattaattgtagtt 16463725  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 16805997 - 16805917
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||  |||||||| || || |||||||||||  ||||||| |||  ||||||||||||| |||||||||||||||||    
T  16805997 ttattaaagaaatgattaattgtgttgattttaatagtaaaattagtatcatttactaaaatatccttattaattgtagtt 16805917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 16845278 - 16845198
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||  |||||||| || || |||||||||||  ||||||| |||  ||||||||||||| |||||||||||||||||    
T  16845278 ttattaaagaaatgattaattgtgttgattttaatagtaaaattagtatcatttactaaaatatccttattaattgtagtt 16845198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 34225706 - 34225626
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||| | ||  |||||||||||||| |||| || ||| |||||||||||| | |||||||||||||||||    
T  34225706 ttattaaggaaatgaataattatattgattttaatggtaaacttagtattatttactaaaacacccttattaattgtagtt 34225626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 39691606 - 39691526
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || ||||||| ||||||||||||  ||  |||||||||||||  ||||||||||| ||||    
T  39691606 ttattaagaaaatgattaattgtgttgatttcaatgataaaattaatatcatttactaaaatactcttattaattgcagtt 39691526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 45235697 - 45235617
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| ||||||||||| || ||||||| |||| |||||||  ||  ||||||||||| | |||||||||||||||||    
T  45235697 ttattaaggaaatgattgattgtgttgatttcaatggtaaaattaatatcatttactaaaacacccttattaattgtagtt 45235617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 14523368 - 14523449
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||| ||||||||  | || ||||||| |||| |||||||  ||  ||||||||||||| |||||||||||||||||    
T  14523368 gttattaaggaaatgattttttgtgttgatttcaatggtaaaattaatatcatttactaaaatatccttattaattgtagtt 14523449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 27866604 - 27866528
Alignment:
Q  27 ttaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||| |||||||| ||| | ||||||||||||||||||||  || | |||| ||||||| |||||||||||||||||    
T  27866604 ttaaggaaatgattaataatgttgattttaatgataaaattaata-tctttagtaaaatatccttattaattgtagtt 27866528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 34120436 - 34120514
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || |||||||| ||| ||||| | ||| ||||||||||||||   |||||||||||||||    
T  34120436 ttattaagaaaatgattaattgtgttgattttgatggtaaaactagtattatttactaaaata--tttattaattgtagtt 34120514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 37322537 - 37322464
Alignment:
Q  31 gaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||| || ||||||| |||| |||||||  ||  ||||| ||||||| |||||||||||||||||    
T  37322537 gaaaatgattgattgtgttgatttcaatggtaaaattaatatcatttattaaaatacccttattaattgtagtt 37322464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 5789645 - 5789725
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || ||||||| || |||  ||||||| || | ||||||||||| | |||||||||||||||||    
T  5789645 ttattaaggaaatgattaattgtattgaattcaatagtaaaattagtggcatttactaaaacacccttattaattgtagtt 5789725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 43115799 - 43115879
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||  |||||||| || || ||||||| ||||||||| || |||| |||||||||||||  |||||| |||||||||    
T  43115799 ttattaaagaaatgattaattgtgttgatttcaatgataaagttagtagcatttactaaaatactcttatttattgtagtt 43115879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 43410542 - 43410462
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||| ||| || || ||||| | ||||||||||||  ||  ||||||||||||| |||||||||||||||||    
T  43410542 ttattaaggaaattattaattgtgttgatatcaatgataaaattaatatcatttactaaaatatccttattaattgtagtt 43410462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 34437997 - 34438072
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaatt 98  Q
    |||||||| ||||||||| ||| | ||||||||||||| |||||  |||  |||||||||||||  ||||||||||    
T  34437997 gttattaaaaaaatgattaataatgttgattttaatgacaaaatatgtatcatttactaaaatattcttattaatt 34438072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 39329682 - 39329741
Alignment:
Q  45 gtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||||| ||||||||||||  ||| ||||||||||| |  ||||||||||||||||    
T  39329682 gtattgatttcaatgataaaattaatagcatttactaaaacactcttattaattgtagtt 39329741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 33729913 - 33729993
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||||  |||| ||||||| ||| |||||||  ||  |||||| ||||||| ||||||||||| |||||    
T  33729913 gttattaagaaaatgattattagtgttgatttcaatcataaaatatgt-ttatttattaaaatatccttattaattatagtt 33729993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 1206724 - 1206780
Alignment:
Q  48 ttgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||| | || ||||||| |||  ||||||||||||| |||||||||||||||||    
T  1206724 ttgatttcagtggtaaaattagtaacatttactaaaatatccttattaattgtagtt 1206780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 16377653 - 16377733
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||  |||||||| || || ||||||  |||| |||||||  ||  |||||| ||||||||||||||||||||||||    
T  16377653 ttattaaagaaatgattaattgtgttgattacaatggtaaaattaatatcatttaccaaaataaccttattaattgtagtt 16377733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 17151 - 17071
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| || || ||||||| |||| ||||||| |||| ||||| || || | ||||||||||| |||||    
T  17151 ttattaagaaaatgattaattgtgttgatttcaatggtaaaattagtagcatttattagaacacccttattaattatagtt 17071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 34018 - 34098
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || ||||||| || |||  ||||||| || | ||||||||||| | |||||||||||||||||    
T  34018 ttattaaggaaatgattaattgtattgaattcaatagtaaaattagtggcatttactaaaacacccttattaattgtagtt 34098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 7979 - 8082
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtttgt---gtaattaagttg 119  Q
    ||||||||| |||||||| ||  | |||||||  ||| |||||||  || ||||||| |||| | ||||||||||||||||| ||   ||||||||||||    
T  7979 gttattaaggaaatgattaattttgttgatttggatggtaaaattaatattatttaccaaaacacccttattaattgtagttagtggagtaattaagttg 8078  T
Q  120 gatg 123  Q
    ||||    
T  8079 gatg 8082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 39204 - 39127
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgta 101  Q
    |||||||| |||||||| || || |||||||| ||||| ||||| |||  ||||||||||| | | ||||||||||||    
T  39204 ttattaaggaaatgattaattgtgttgattttgatgatgaaattagtatcatttactaaaacatcattattaattgta 39127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0583 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 2141 - 2061
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| || ||||| || || || |||| ||||||||||||  ||  ||||||||||| | |||||||||||||||||    
T  2141 ttattaaggaagtgattaattgtgttaatttcaatgataaaattaatatcatttactaaaacatccttattaattgtagtt 2061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 5506 - 5426
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    ||||||||||||||||| |  || |||| || |||| |||||||  ||  ||||||||||||| ||||||||||| |||||    
T  5506 ttattaagaaaatgattaactgtgttgaattcaatggtaaaattaatatcatttactaaaatatccttattaattttagtt 5426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 1821 - 1741
Alignment:
Q  23 gttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagt 103  Q
    |||||||||||||||||| ||  | |||||||| ||| ||||||| |||  ||||||| ||| | || |||||||||||||    
T  1821 gttattaagaaaatgattaattatgttgattttgatggtaaaattagtatcatttacttaaacacccgtattaattgtagt 1741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 136036 - 136116
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||  |||||||| ||| | ||||||| |||| |||||||  ||| ||||||||||| | ||||||||||| |||||    
T  136036 ttattaaataaatgattaataatgttgatttcaatggtaaaattaatagcatttactaaaacacccttattaattatagtt 136116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 105800 - 105720
Alignment:
Q  24 ttattaagaaaatgattgatagtattgattttaatgataaaattggtagtatttactaaaataaccttattaattgtagtt 104  Q
    |||||||| |||||||| || || || |||| |||| |||||||  |||  |||||||||| | |||||||||||||||||    
T  105800 ttattaagtaaatgattaattgtgtttatttcaatggtaaaattaatagcgtttactaaaacacccttattaattgtagtt 105720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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