View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7176_low_2 (Length: 385)
Name: NF7176_low_2
Description: NF7176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7176_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 51402487 - 51402140
Alignment:
| Q |
18 |
gaaagcaccattagacgtggctttcatcggtgcaggacatgtcacattaggtgtcgccatgttgtcgcggcagcaccaccaagattattcagatcgcttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51402487 |
gaaagcaccattagacgtggctttcatcggtgcaggacatgtcacattaggcgtcgccatgttgtcgcggcagcaccaccaagattattcagatcgcttc |
51402388 |
T |
|
| Q |
118 |
aaaaattaacgttgctggttattatgaatgatcgatcgatcgatactaagaaaaaaggacactggtgttagttacataatagcnnnnnnngggtatcaga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
51402387 |
aaaaattaacgttgctggttattatgaatgatcgatcgatcgatactaagaaaaaaggacactggtgttagttacataatagcaaaaaaagggtatcaga |
51402288 |
T |
|
| Q |
218 |
aactaactagcttgttgttacgttatatacgtggcttacagataagaccaaagaaagaagttaatgtcacagcttatagtagtgagattcaaaagaacaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
51402287 |
aactaactagcttgttgttacgttatatacgtggcttacagataagaccaaagaaagaagttaatgtcacagct--tagtagtgagattcaaaagaacaa |
51402190 |
T |
|
| Q |
318 |
gcggaagtatttaaacgaaaaccatgccatatactgcttttctacgtgtg |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51402189 |
gcggaagtatttaaacgaaaaccatgccatatactgcttttctacgtgtg |
51402140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University