View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7176_low_3 (Length: 357)
Name: NF7176_low_3
Description: NF7176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7176_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 3341783 - 3341467
Alignment:
| Q |
19 |
gatccaacattctattataccacttctaattaacatcataaacaaacaaataagtgttaatcaaactttggttaggaaagtcaaaatatttacttgcaaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3341783 |
gatccaacattctattataccacttctaattaacatcataaacaaacaaataagtgtta---------------ggaaagtcaaaatatttacttgcaaa |
3341699 |
T |
|
| Q |
119 |
tactccaattcttgagactgtgaccatcactggcatggagagccttctgaacatctggtctgttataaaatattttagcatagtcatctagacatggatc |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3341698 |
tactccaattcttgagattgtgaccatcactggcatggagagccttctgaacatctggtctgttataaaatattttagcatagtcatctagacatggatc |
3341599 |
T |
|
| Q |
219 |
ataaccacccattacctttggtatctagtttaacaaatgcacaaggtagtgttagaagtttttaagcctaaaaacacttaaagagagattctgataaaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3341598 |
ataaccacccattacctttggtatctagtttaacaaatgcacaaggtagtgttacaagtttttaagcctaaaaacacttaaagagagactctgataaaaa |
3341499 |
T |
|
| Q |
319 |
taaaattttctaatctcaccatgtctttgttt |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
3341498 |
taaaattttctaatctcaccatgtctttgttt |
3341467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 103 - 273
Target Start/End: Complemental strand, 3334256 - 3334086
Alignment:
| Q |
103 |
aatatttacttgcaaatactccaattcttgagactgtgaccatcactggcatggagagccttctgaacatctggtctgttataaaatattttagcatagt |
202 |
Q |
| |
|
||||| ||||||||||||||||||||| | ||||| ||||||||||||||||| || || ||||||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
3334256 |
aatatatacttgcaaatactccaattccttagactatgaccatcactggcatgaagggctttctgaacatctggtttgttgtaaaaagctttagcatagt |
3334157 |
T |
|
| Q |
203 |
catctagacatggatcataaccacccattacctttggtatctagtttaacaaatgcacaaggtagtgttag |
273 |
Q |
| |
|
|||| | ||||||||||||||||||||| | | |||||||||||| | ||||| ||||| | |||||||| |
|
|
| T |
3334156 |
catccaaacatggatcataaccacccatgatccttggtatctagtcaaccaaatccacaaagaagtgttag |
3334086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 108 - 230
Target Start/End: Original strand, 35793188 - 35793310
Alignment:
| Q |
108 |
ttacttgcaaatactccaattcttgagactgtgaccatcactggcatggagagccttctgaacatctggtctgttataaaatattttagcatagtcatct |
207 |
Q |
| |
|
|||||||||||||||||||||||| ||| | ||||||||||| ||||| || |||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
35793188 |
ttacttgcaaatactccaattctttagattatgaccatcactagcatgaagggccttctgaacatctggtctgttatagaaagctttagcatagtcatcc |
35793287 |
T |
|
| Q |
208 |
agacatggatcataaccacccat |
230 |
Q |
| |
|
| ||||| |||||||||||||| |
|
|
| T |
35793288 |
aagcatgggtcataaccacccat |
35793310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University