View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7176_low_6 (Length: 240)
Name: NF7176_low_6
Description: NF7176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7176_low_6 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 27371590 - 27371811
Alignment:
| Q |
19 |
ccaagctcccaagtattgaacgatatgtgtaccttaaagtgacatcatcaccccacaaaatggcctctttttgatttggacactttgctctaagataggc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27371590 |
ccaagctcccaagtattgaacgatatgtgtaccttaaagtgacatcatcaccccacaaaatggcctctttttgatttggacactttgctctaagataggc |
27371689 |
T |
|
| Q |
119 |
aatggaattgtttaggtttctacgacactgatttggctcaagatctccgcgacacaacccaatggcctttattttgtcagggtgttggccatatgagaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27371690 |
aatggaattgtttaggtttctacgacactgatttggctcaagatctccgcgacacaacccaatggcctttattttgtctgggtgttggccatatgagaaa |
27371789 |
T |
|
| Q |
219 |
ttgtaaaaaccgtagttaattt |
240 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
27371790 |
ttgtaaaaaccgtagttaattt |
27371811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 229
Target Start/End: Complemental strand, 47764745 - 47764570
Alignment:
| Q |
54 |
aaagtgacatcatcaccccacaaaatggcctctttttgatttggacactttgctctaagataggcaatggaattgtttaggtttctacgacactgatttg |
153 |
Q |
| |
|
||||||| |||| ||||||||| ||| |||||||||||||||||||| | | |||||||| ||| ||||| ||||||||| ||| | |||||||||| | |
|
|
| T |
47764745 |
aaagtgaaatcaccaccccacacaatcgcctctttttgatttggacattgttctctaagaaagggaatggtattgtttagctttgcaagacactgattcg |
47764646 |
T |
|
| Q |
154 |
gctcaagatctccgcgacacaacccaatggcctttattttgtcagggtgttggccatatgagaaattgtaaaaacc |
229 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | | |||||| |||| ||||||||||||||||||||| ||||| |
|
|
| T |
47764645 |
gctcaagatctccgcggcacaacccaatggtgtatgctttgtcggggtcttggccatatgagaaattgtagaaacc |
47764570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 54 - 240
Target Start/End: Complemental strand, 47773135 - 47772949
Alignment:
| Q |
54 |
aaagtgacatcatcaccccacaaaatggcctctttttgatttggacactttgctctaagataggcaatggaattgtttaggtttctacgacactgatttg |
153 |
Q |
| |
|
||||||| |||| ||||||||| ||| ||||||||||| |||||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47773135 |
aaagtgaaatcaccaccccacacaattgcctctttttggtttggacactgctctctgagataaccaatggaattgtttaggtttgtacgacactgatttg |
47773036 |
T |
|
| Q |
154 |
gctcaagatctccgcgacacaacccaatggcctttattttgtcagggtgttggccatatgagaaattgtaaaaaccgtagttaattt |
240 |
Q |
| |
|
|||||| |||||||||||||| ||| ||| | | | ||||| || | || |||||||||||||||||| ||||||||||| |||| |
|
|
| T |
47773035 |
gctcaatatctccgcgacacacccctatgacatatgctttgtttggttcttcgccatatgagaaattgtagaaaccgtagttgattt |
47772949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 238
Target Start/End: Complemental strand, 47756147 - 47756030
Alignment:
| Q |
121 |
tggaattgtttaggtttctacgacactgatttggctcaagatctccgcgacacaacccaatggcctttattttgtcagggtgttggccatatgagaaatt |
220 |
Q |
| |
|
|||| |||| ||||||| ||| ||||| |||||||||||||||| || ||| ||||||| |||||| | |||||| |||| |||||||||||||||||| |
|
|
| T |
47756147 |
tggacttgtctaggtttatacaacacttatttggctcaagatctacgtgacgcaacccagtggcctatgctttgtctgggtcttggccatatgagaaatt |
47756048 |
T |
|
| Q |
221 |
gtaaaaaccgtagttaat |
238 |
Q |
| |
|
|| ||| | |||||||| |
|
|
| T |
47756047 |
ttagaaatcatagttaat |
47756030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 47713365 - 47713428
Alignment:
| Q |
177 |
ccaatggcctttattttgtcagggtgttggccatatgagaaattgtaaaaaccgtagttaattt |
240 |
Q |
| |
|
|||||||| |||| |||||| | || ||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
47713365 |
ccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaaaccgtagttgattt |
47713428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 47718159 - 47718222
Alignment:
| Q |
177 |
ccaatggcctttattttgtcagggtgttggccatatgagaaattgtaaaaaccgtagttaattt |
240 |
Q |
| |
|
|||| ||| |||| |||||||| || ||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
47718159 |
ccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagttgattt |
47718222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 47745948 - 47746011
Alignment:
| Q |
177 |
ccaatggcctttattttgtcagggtgttggccatatgagaaattgtaaaaaccgtagttaattt |
240 |
Q |
| |
|
|||||||| |||| ||| |||| || ||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
47745948 |
ccaatggcgtttactttatcagtgttttggccataagagaaattgtagaaaccgtagttgattt |
47746011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University