View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7177_high_1 (Length: 658)

Name: NF7177_high_1
Description: NF7177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7177_high_1
NF7177_high_1
[»] chr3 (1 HSPs)
chr3 (1-646)||(25695840-25696485)


Alignment Details
Target: chr3 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 1 - 646
Target Start/End: Original strand, 25695840 - 25696485
Alignment:
Q  1 tctctgtcacagcacttcttctctacaaggttctctctttccttcttttttccacaccccatcaccaacccacttctcaatttcccttcaatcgtcaaac 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25695840 tctctctcacagcacttcttctctacaaggttctctctttccttcttttttccacaccccatcaccaacccacttctcaatttcccttcaatcgtcaaac 25695939  T
Q  101 tatgaaacaccgacacagacacaaacatgtatggtcatttgacacgacactaacattgacatatctagataggaataattagaaggnnnnnnn-ttcaac 199  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |||||        ||||||    
T  25695940 tatgaaacactgacacagacacaaacatgtatggtcatttgacacgacacta-cattgacatatgtatataggaataatttgaaggaaaaaaaattcaac 25696038  T
Q  200 gtaattacatgtatcagtgtcgtgtcagataccagttggtgctaggagctttcaaattctatcattgtttttgctgtctaactannnnnnnncttctttg 299  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  25696039 ataattacatgtatcagtgtcgtgtcagataccagttggtgctaggagctttcaaattctatcattgtttttgctgtctaactattttttttcttctttg 25696138  T
Q  300 tgtaatttcatcaaacaggtggatgatgtagctagcagaactggaacagtggttggtcacaacctagaaccaacgccatggcatgttttccctaccaaat 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25696139 tgtaatttcatcaaacaggtggatgatgtagctagcagaactggaacagtggttggtcacaacctagaaccaacgccatggcatgttttccctaccaaat 25696238  T
Q  400 cctttgatgaagagactcgacagagccgagcctacaaaattatacaatgctcttatctcacatgtggttctgcagactctggcggcaaaacaggacctag 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25696239 cctttgatgaagagactcgacagagccgagcctacaaaattatacaatgctcttatctcacatgtggttctgcagactctggcggcaaaacaggacctag 25696338  T
Q  500 ttttgccgccaaagatgcaaaacaacaaaattgtcctgatttcttccgggcgatccggaaggatctggagccatggaagaaaacaaagatttctaaaggg 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25696339 ttttgccgccaaagatgcaaaacaacaaaattgtcctgatttcttccgggcgatccggaaggatctggagccatggaagaaaacaaagatttctaaaggg 25696438  T
Q  600 catttggtggaagcacaaaagtatgctgcatttagagtggtgattgt 646  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25696439 catttggtggaagcacaaaagtatgctgcatttagagtggtgattgt 25696485  T

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