View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7177_high_5 (Length: 246)

Name: NF7177_high_5
Description: NF7177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7177_high_5
NF7177_high_5
[»] chr5 (25 HSPs)
chr5 (105-227)||(17325985-17326107)
chr5 (107-224)||(7390206-7390323)
chr5 (106-228)||(138285-138406)
chr5 (107-226)||(16515647-16515766)
chr5 (105-224)||(18873600-18873719)
chr5 (105-227)||(10033686-10033811)
chr5 (106-228)||(33281816-33281936)
chr5 (105-205)||(27351490-27351589)
chr5 (106-224)||(43511759-43511879)
chr5 (106-224)||(3349535-3349652)
chr5 (105-224)||(42291685-42291805)
chr5 (106-226)||(8379246-8379365)
chr5 (106-222)||(10591081-10591196)
chr5 (106-217)||(20976126-20976236)
chr5 (137-200)||(4177372-4177435)
chr5 (105-204)||(17513761-17513860)
chr5 (106-205)||(29156331-29156430)
chr5 (137-199)||(13288615-13288677)
chr5 (152-224)||(5829568-5829640)
chr5 (105-205)||(23069365-23069464)
chr5 (107-205)||(13424008-13424106)
chr5 (105-224)||(40779331-40779450)
chr5 (152-203)||(16061085-16061136)
chr5 (114-200)||(17462992-17463080)
chr5 (107-226)||(26312132-26312247)
[»] chr2 (16 HSPs)
chr2 (105-227)||(13997453-13997575)
chr2 (105-225)||(29480440-29480561)
chr2 (105-227)||(39081536-39081657)
chr2 (106-227)||(36059707-36059828)
chr2 (105-201)||(1419049-1419145)
chr2 (105-224)||(1226071-1226191)
chr2 (106-224)||(17117451-17117568)
chr2 (117-224)||(15457653-15457760)
chr2 (105-224)||(18172748-18172864)
chr2 (105-228)||(31272968-31273089)
chr2 (118-224)||(38985514-38985620)
chr2 (106-205)||(18915877-18915976)
chr2 (107-205)||(12269568-12269667)
chr2 (105-156)||(38599541-38599592)
chr2 (147-226)||(18676113-18676193)
chr2 (107-178)||(36481538-36481607)
[»] chr8 (10 HSPs)
chr8 (105-222)||(42076249-42076366)
chr8 (107-228)||(36514955-36515077)
chr8 (105-205)||(35875039-35875139)
chr8 (105-178)||(3628598-3628671)
chr8 (119-224)||(34523760-34523863)
chr8 (106-224)||(12531700-12531819)
chr8 (106-228)||(32097977-32098100)
chr8 (147-226)||(43926129-43926206)
chr8 (152-205)||(3471785-3471840)
chr8 (108-204)||(30915109-30915208)
[»] chr7 (23 HSPs)
chr7 (105-228)||(36438153-36438275)
chr7 (106-205)||(26633504-26633603)
chr7 (105-201)||(40737829-40737924)
chr7 (106-225)||(42312150-42312270)
chr7 (141-226)||(7369967-7370053)
chr7 (105-205)||(30739264-30739365)
chr7 (106-224)||(1366150-1366267)
chr7 (105-205)||(773707-773806)
chr7 (105-199)||(3799593-3799685)
chr7 (107-203)||(41908320-41908416)
chr7 (107-203)||(41852127-41852221)
chr7 (105-225)||(28589948-28590067)
chr7 (117-205)||(25610218-25610306)
chr7 (108-205)||(40841066-40841165)
chr7 (106-224)||(40001517-40001634)
chr7 (105-145)||(7366827-7366867)
chr7 (137-212)||(32956939-32957014)
chr7 (146-199)||(28105795-28105848)
chr7 (147-200)||(44002762-44002815)
chr7 (147-205)||(7636146-7636206)
chr7 (107-226)||(12251088-12251208)
chr7 (105-173)||(21145496-21145562)
chr7 (165-205)||(26282358-26282398)
[»] chr1 (19 HSPs)
chr1 (105-226)||(24556946-24557063)
chr1 (105-227)||(17674156-17674278)
chr1 (107-227)||(22386638-22386758)
chr1 (105-187)||(13120708-13120790)
chr1 (105-226)||(44836529-44836649)
chr1 (105-226)||(26486178-26486297)
chr1 (106-227)||(37873558-37873680)
chr1 (105-203)||(50371275-50371372)
chr1 (113-227)||(42740256-42740367)
chr1 (105-225)||(15441430-15441550)
chr1 (105-205)||(9777554-9777655)
chr1 (106-225)||(5560625-5560743)
chr1 (105-201)||(27703362-27703453)
chr1 (147-199)||(39080451-39080503)
chr1 (106-205)||(1269692-1269793)
chr1 (122-226)||(30004711-30004815)
chr1 (167-224)||(12971608-12971664)
chr1 (154-224)||(25930791-25930862)
chr1 (119-176)||(33124495-33124551)
[»] chr3 (12 HSPs)
chr3 (105-227)||(46904882-46905004)
chr3 (105-205)||(27303325-27303425)
chr3 (105-226)||(7767206-7767327)
chr3 (105-205)||(51147077-51147177)
chr3 (105-204)||(40151955-40152053)
chr3 (105-228)||(15998424-15998540)
chr3 (105-201)||(19965705-19965801)
chr3 (106-224)||(48626835-48626953)
chr3 (147-197)||(21596516-21596566)
chr3 (147-226)||(25598886-25598965)
chr3 (106-224)||(43905659-43905776)
chr3 (107-178)||(29387605-29387674)
[»] chr4 (12 HSPs)
chr4 (107-226)||(35653783-35653902)
chr4 (105-205)||(24449239-24449339)
chr4 (107-165)||(22423828-22423886)
chr4 (106-224)||(55134350-55134467)
chr4 (105-227)||(21791352-21791472)
chr4 (106-224)||(34982366-34982483)
chr4 (105-172)||(10575380-10575447)
chr4 (105-205)||(26328853-26328955)
chr4 (160-200)||(9925292-9925332)
chr4 (120-205)||(5545483-5545569)
chr4 (147-226)||(53011896-53011975)
chr4 (107-226)||(27632542-27632659)
[»] chr6 (12 HSPs)
chr6 (105-226)||(3748370-3748492)
chr6 (106-199)||(30915191-30915284)
chr6 (105-205)||(6294394-6294496)
chr6 (105-205)||(11088710-11088811)
chr6 (106-224)||(29308273-29308390)
chr6 (105-178)||(21946245-21946317)
chr6 (118-224)||(1092847-1092952)
chr6 (105-205)||(350555-350658)
chr6 (146-224)||(1690523-1690600)
chr6 (105-205)||(19231753-19231865)
chr6 (147-226)||(2618535-2618613)
chr6 (107-178)||(3514702-3514770)
[»] scaffold0034 (1 HSPs)
scaffold0034 (146-228)||(99097-99180)
[»] scaffold0606 (1 HSPs)
scaffold0606 (108-203)||(8246-8336)


Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 17325985 - 17326107
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||    
T  17325985 ggtaaatttcacctatctttcactttattttattttgttttgtttcgtgtttaaaagttcttctgattctgattttttaatgaattttagctacacaaaa 17326084  T
Q  205 agaattgcgttttgattttactg 227  Q
    |||||||||||||||||||||||    
T  17326085 agaattgcgttttgattttactg 17326107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 7390323 - 7390206
Alignment:
Q  107 taaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaag 206  Q
    ||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||| |||| |||||||||||||||||||||| |||     
T  7390323 taaatttcacctctctttcacttaattttattttgttttgttttatgtttaaaagttcttctgattccgattttttaatgaagcttagctacacacaaaa 7390224  T
Q  207 aattgcgttttgatttta 224  Q
    |||| |||||| ||||||    
T  7390223 aattacgtttttatttta 7390206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 106 - 228
Target Start/End: Original strand, 138285 - 138406
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| |||||  |||||||| ||||||||||||||||    
T  138285 gtaaatttcacctctctttcacttaattttattttgttttgtttcctgtttaaaagttcttttgattttgatttcttaatgaaacttagctacacaaaaa 138384  T
Q  206 gaattgcgttttgattttactga 228  Q
     || | |||||| ||||||||||    
T  138385 aaaat-cgtttttattttactga 138406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 107 - 226
Target Start/End: Original strand, 16515647 - 16515766
Alignment:
Q  107 taaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaag 206  Q
    |||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||| | ||| |||||||||||||||||| |||     
T  16515647 taaatttcacctctttttcacttaattttattttgttttgtttcatgttttaaagttcttctcattctgactttttcatgaagcttagctacacacaaaa 16515746  T
Q  207 aattgcgttttgattttact 226  Q
    || |||||||| ||||||||    
T  16515747 aaatgcgtttttattttact 16515766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 18873600 - 18873719
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    |||||||||||||| |||||||||| | |||||||||||||||||| |||||||||||| |||||||||| ||| |||||||||| ||| |||||||| |    
T  18873600 ggtaaatttcacctttctttcacttaactttattttgttttgtttcatgtttaaaagtttttctgattctaattttttaatgaagtttaactacacaata 18873699  T
Q  205 agaattgcgttttgatttta 224  Q
    | |||| |||||| ||||||    
T  18873700 aaaattacgtttttatttta 18873719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 10033686 - 10033811
Alignment:
Q  105 ggtaaatttcacctctctttcac-----ttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctaca 199  Q
    |||||||||||||||||||||||     || |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||  ||| |||||    
T  10033686 ggtaaatttcacctctctttcacttaattttattttattttgttttgtttcatgtttaaaagttcttctgattctgattttttaacgaaatttaactaca 10033785  T
Q  200 caaaaagaattgcgttttgattttactg 227  Q
    |||||  |||||| |||| |||||||||    
T  10033786 caaaa--aattgcatttttattttactg 10033811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 106 - 228
Target Start/End: Original strand, 33281816 - 33281936
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    |||||||||||||||||||||||| ||||| || | ||||||||| |||||| |||||||| ||||| ||||  |||||||||| ||| |||||||||||    
T  33281816 gtaaatttcacctctctttcactt-atttttttatattttgtttcatgtttagaagttcttttgattatgatcttttaatgaagtttaactacacaaaaa 33281914  T
Q  206 gaattgcgttttgattttactga 228  Q
    | |||||||||| ||||||||||    
T  33281915 g-attgcgtttttattttactga 33281936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 27351490 - 27351589
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    ||||||||||||||||||||||||| ||||| |||| |||  |||| |||||| |||||||||||||||  ||| |||||||||| ||||||||||||||    
T  27351490 ggtaaatttcacctctctttcacttaatttt-ttttatttcctttcatgtttagaagttcttctgattcgaattttttaatgaagtttagctacacaaaa 27351588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 43511759 - 43511879
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacac--aaa 203  Q
    |||||||  ||||||||||||||| ||||| || | ||| ||||| |||||| ||| ||| |||||||||||| |||||| ||||||||||||||  |||    
T  43511759 gtaaattctacctctctttcacttaatttttttgtatttcgtttcatgtttagaagctctgctgattctgattttttaataaagcttagctacacaaaaa 43511858  T
Q  204 aagaattgcgttttgatttta 224  Q
    || ||||||||||| ||||||    
T  43511859 aaaaattgcgtttttatttta 43511879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 3349652 - 3349535
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    |||||||  ||||||||||||||  | ||| || | ||| ||||| |||||| ||  |||||||||||||||| |||||| |||||||||||||||||||    
T  3349652 gtaaattatacctctctttcactcaagttttttgtatttagtttcatgtttagaaactcttctgattctgattttttaataaagcttagctacacaaaaa 3349553  T
Q  206 gaattgcgttttgatttta 224  Q
     ||||||||||| ||||||    
T  3349552 -aattgcgtttttatttta 3349535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 224
Target Start/End: Complemental strand, 42291805 - 42291685
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgtttt--gtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaa 202  Q
    ||||||||  ||||||||||||||| ||||| |||||| ||  ||||| |||||| ||| |||||||||||||||| ||| || ||| ||| ||||||||    
T  42291805 ggtaaattctacctctctttcacttaatttttttttgtatttcgtttcatgtttagaagctcttctgattctgatttttttataaagtttaactacacaa 42291706  T
Q  203 aaagaattgcgttttgatttta 224  Q
    ||| ||||||||||| ||||||    
T  42291705 aaa-aattgcgtttttatttta 42291685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 8379365 - 8379246
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    |||||||||||||||||||||||| || || |||| ||| ||||| |||||| ||| ||||||||| || ||| ||||||||||| || |||||||||||    
T  8379365 gtaaatttcacctctctttcacttaatattttttt-tttcgtttcatgtttagaagatcttctgatacttattttttaatgaagcataactacacaaaaa 8379267  T
Q  206 gaattgcgttttgattttact 226  Q
     || | | |||| ||||||||    
T  8379266 aaaatccatttttattttact 8379246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 222
Target Start/End: Complemental strand, 10591196 - 10591081
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    |||||||  ||||||||||||||| ||||| || | ||| ||||| |||||| ||  | |||||||||||||| |||||| ||||||| |||||||||||    
T  10591196 gtaaattctacctctctttcacttaatttttttgtatttcgtttcatgtttagaaactattctgattctgattttttaataaagcttaactacacaaaaa 10591097  T
Q  206 gaattgcgttttgattt 222  Q
     ||||||||||| ||||    
T  10591096 -aattgcgtttttattt 10591081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 217
Target Start/End: Original strand, 20976126 - 20976236
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    |||||||  ||||||||||||||| ||||| || | ||| |||   |||||||||| |||||||||| ||||| |||||| |||| ||||||||||||||    
T  20976126 gtaaattctacctctctttcacttaatttttttgtatttggttcaatgtttaaaagctcttctgattatgattttttaataaagcatagctacacaaaaa 20976225  T
Q  206 gaattgcgtttt 217  Q
     |||||||||||    
T  20976226 -aattgcgtttt 20976236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 4177372 - 4177435
Alignment:
Q  137 ttttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacac 200  Q
    |||| ||||||||| |||||| |||||||||||||| ||||| |||||||||||||| ||||||    
T  4177372 ttttattttgtttcatgtttagaagttcttctgattatgattttttaatgaagcttaactacac 4177435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 17513860 - 17513761
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    ||||||||  ||||||||||||||| ||||| || | ||| ||||| |||||| ||| ||||||||||||  || |||||| ||||||| ||||||||||    
T  17513860 ggtaaattctacctctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttctgattctatttttttaataaagcttaactacacaaaa 17513761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 29156331 - 29156430
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    |||||||  |||||||||||| || ||||| || | ||||||||| |||||| ||| ||| |||||| ||||| |||||| ||| |||||||||||||||    
T  29156331 gtaaattctacctctctttcaattaatttttttgtattttgtttcatgtttagaagctctactgattttgattttttaataaagtttagctacacaaaaa 29156430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 13288615 - 13288677
Alignment:
Q  137 ttttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctaca 199  Q
    |||| ||||||||| |||||||| |||||||||||| ||||| ||||||||| ||||||||||    
T  13288615 ttttattttgtttcatgtttaaatgttcttctgattatgattttttaatgaaacttagctaca 13288677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 5829568 - 5829640
Alignment:
Q  152 tgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaagaattgcgttttgatttta 224  Q
    |||||| ||| |||||||||||||||| |||||| ||| ||||||||| ||||| |||||| |||| ||||||    
T  5829568 tgtttagaagctcttctgattctgattttttaataaagtttagctacaaaaaaaaaattgcatttttatttta 5829640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 23069365 - 23069464
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    |||||||||||| | ||||||| || ||||| |||| ||  ||||| | |||| |||||||||| ||| ||||| |||||||||||||||||||| ||||    
T  23069365 ggtaaatttcacatttctttcatttaatttt-ttttattacgtttcatatttagaagttcttctaattttgattttttaatgaagcttagctacaaaaaa 23069463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 205
Target Start/End: Original strand, 13424008 - 13424106
Alignment:
Q  107 taaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctga--ttgtttaatgaagcttagctacacaaaa 204  Q
    ||||||||||||||  ||||||| ||||| ||||  ||  |||| |||||||||||||||||||||||||  || |||||||||  ||| ||||||||||    
T  13424008 taaatttcacctct--ttcacttaatttttttttaattcctttcatgtttaaaagttcttctgattctgattttttttaatgaaatttaactacacaaaa 13424105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 40779331 - 40779450
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattct--gattgtttaatgaagcttagctacacaa 202  Q
    ||||||||||||||||||||||||| ||||| |||| |||  |||| ||||||||| ||||||| |||||    || |||||||||| ||| |||||||     
T  40779331 ggtaaatttcacctctctttcacttaatttt-ttttatttcatttcatgtttaaaatttcttcttattctagttttttttaatgaagtttaactacacac 40779429  T
Q  203 aaagaattgcgttttgatttta 224  Q
    ||| |||| |||||| ||||||    
T  40779430 aaa-aattacgtttttatttta 40779450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 203
Target Start/End: Original strand, 16061085 - 16061136
Alignment:
Q  152 tgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaa 203  Q
    |||||| || || |||||||||||||| |||||||||||||| |||||||||    
T  16061085 tgtttagaattttttctgattctgattttttaatgaagcttaactacacaaa 16061136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 17462992 - 17463080
Alignment:
Q  114 cacctctctttcacttcattttatt--ttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacac 200  Q
    |||||||||||| ||| ||||| ||  || ||| ||||| |||||| |||||||||| |||||  || |||||||||||||| ||||||    
T  17462992 cacctctctttcgcttaatttttttatttatttcgtttcatgtttagaagttcttctaattctagttttttaatgaagcttaactacac 17463080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 226
Target Start/End: Original strand, 26312132 - 26312247
Alignment:
Q  107 taaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctga-ttgtttaatgaagcttagctacacaaaaa 205  Q
    ||||||||||||||  ||||||| ||||| ||||  ||  |||| |||||| || ||||||||||||||| || |||||||||  |||||||||||||||    
T  26312132 taaatttcacctct--ttcacttaatttt-ttttaattcctttcatgtttagaacttcttctgattctgatttttttaatgaaatttagctacacaaaaa 26312228  T
Q  206 gaattgcgttttgattttact 226  Q
     |||| |||||| ||||||||    
T  26312229 -aattacgtttt-attttact 26312247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 13997453 - 13997575
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    |||||||||||| |||||||||||| || || |||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13997453 ggtaaatttcacatctctttcacttaatcttgttttattttgttttgtgtttaaaagttcttctgattctgattttttaatgaagcttagctacacaaaa 13997552  T
Q  205 agaattgcgttttgattttactg 227  Q
    |||||||||||||||||||||||    
T  13997553 agaattgcgttttgattttactg 13997575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 29480561 - 29480440
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctga-ttgtttaatgaagcttagctacacaaa 203  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||| |||| ||||||||    
T  29480561 ggtaaagttcacctctctttcacttaattttattttgttttgtttcgtatttaaaagttcttctgattctgatttttttaatgaagattaggtacacaaa 29480462  T
Q  204 aagaattgcgttttgattttac 225  Q
    ||||||||| ||||||||||||    
T  29480461 aagaattgcattttgattttac 29480440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 39081536 - 39081657
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| ||||||||||| | |||||||||||| ||||||||||    
T  39081536 ggtaaatttcacctctctttcacttaattttattttgttttgtttcatatttaaaagttcttatgattctgattttataatgaagcttaactacacaaaa 39081635  T
Q  205 agaattgcgttttgattttactg 227  Q
    | ||||  ||||| |||||||||    
T  39081636 a-aattatgtttttattttactg 39081657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 36059828 - 36059707
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    |||||||| ||||||||||||||| |||||||||| ||||||||| |||||| |||||||| ||| ||||||| |||||||||| ||||||||| |||||    
T  36059828 gtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttttaatgaagtttagctacaaaaaaa 36059729  T
Q  206 gaattgcgttttgattttactg 227  Q
     ||||||||||| |||||||||    
T  36059728 aaattgcgtttttattttactg 36059707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 1419049 - 1419145
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacaca 201  Q
    |||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||| | |||||||||  ||| |||||||    
T  1419049 ggtaaatttcacttctctttcacttaattttattttgttttgtttcatgtttaaaagttcttctgattttgactttttaatgaaatttaactacaca 1419145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 105 - 224
Target Start/End: Complemental strand, 1226191 - 1226071
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctga-ttgtttaatgaagcttagctacacaaa 203  Q
    ||||||||||| ||||||||||||| ||||| |||| ||| ||||| |||||| |||||||||| ||||||| || |||||||||| |||||||||||||    
T  1226191 ggtaaatttcatctctctttcacttaatttttttttatttcgtttcatgtttagaagttcttctaattctgatttttttaatgaagtttagctacacaaa 1226092  T
Q  204 aagaattgcgttttgatttta 224  Q
    || ||||  ||||| ||||||    
T  1226091 aaaaattatgtttttatttta 1226071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 17117568 - 17117451
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    |||||||  ||||||||||||||| ||||| || | ||| ||||| |||||| ||| |||||||||||||||| |||||| |||||||||||||||||||    
T  17117568 gtaaattctacctctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttctgattctgattttttaataaagcttagctacacaaaaa 17117469  T
Q  206 gaattgcgttttgatttta 224  Q
     |||||| |||| ||||||    
T  17117468 -aattgcatttttatttta 17117451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 15457653 - 15457760
Alignment:
Q  117 ctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaagaattgcgttt 216  Q
    ||||||||||||| ||||| || | ||| ||||| |||| | ||| |||||| ||| ||||| |||||| ||||||||||||||||||||||||| ||||    
T  15457653 ctctctttcacttaatttttttgtttttcgtttcatgttcagaagctcttcttattttgattttttaataaagcttagctacacaaaaagaattgtgttt 15457752  T
Q  217 tgatttta 224  Q
    | ||||||    
T  15457753 ttatttta 15457760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 224
Target Start/End: Complemental strand, 18172864 - 18172748
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    ||||||||  |||||||||||||   ||||| || | ||| ||||| |||||| ||  |||||||||||||||| |||||| |||||| |||||||||||    
T  18172864 ggtaaattctacctctctttcaca--atttttttgtatttcgtttcatgtttagaaactcttctgattctgattttttaataaagcttggctacacaaaa 18172767  T
Q  205 agaattgcgttttgatttta 224  Q
    | ||||||||||| ||||||    
T  18172766 a-aattgcgtttttatttta 18172748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 228
Target Start/End: Complemental strand, 31273089 - 31272968
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    |||||||||||| |||||||| ||| ||||| | ||  || ||||  | |||| |||||||||||||| ||||| |||||||||||||| || |||||||    
T  31273089 ggtaaatttcacttctctttcgcttaatttt-tcttaattcgtttaatttttagaagttcttctgattttgattttttaatgaagcttaactccacaaaa 31272991  T
Q  205 agaattgcgttttgattttactga 228  Q
    | |||| |||||| ||||||||||    
T  31272990 a-aatttcgtttttattttactga 31272968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 38985620 - 38985514
Alignment:
Q  118 tctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaagaattgcgtttt 217  Q
    |||||||||||| ||||| || | ||| ||||| | |||| ||  |||||||||||||||| |||||| ||||||| ||||||| ||| |||| ||||||    
T  38985620 tctctttcacttaatttttttgtatttcgtttcatttttagaaactcttctgattctgattttttaataaagcttaactacacacaaaaaattacgtttt 38985521  T
Q  218 gatttta 224  Q
     ||||||    
T  38985520 tatttta 38985514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 205
Target Start/End: Complemental strand, 18915976 - 18915877
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    |||||||  ||||||||||||||| ||||| || | ||| ||||| |||||| ||| ||||||||||||  || |||||| ||||||| || ||||||||    
T  18915976 gtaaattctacctctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttctgattctatttttttaataaagcttaactgcacaaaaa 18915877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 205
Target Start/End: Original strand, 12269568 - 12269667
Alignment:
Q  107 taaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgatt---gtttaatgaagcttagctacacaaa 203  Q
    ||||||||||||||  ||||||| ||||| ||||  ||  |||| |||||| ||||||||||||||||||||    |||||||||  |||||||||||||    
T  12269568 taaatttcacctct--ttcacttaatttttttttaattcctttcatgtttagaagttcttctgattctgattttcttttaatgaaatttagctacacaaa 12269665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 38599541 - 38599592
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgttt 156  Q
    ||||||||||| ||||||||||||| |||||||||| |||| |||| |||||    
T  38599541 ggtaaatttcatctctctttcacttaattttattttattttatttcatgttt 38599592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 18676193 - 18676113
Alignment:
Q  147 tttcgtgtttaaaagttcttctgattctga---ttgtttaatgaagcttagctacacaaaaagaattgcgttttgattttact 226  Q
    |||| |||||| ||||||||||||||||||   || |||||||||  ||||||||||||||| |||| |||||| ||||||||    
T  18676193 tttcatgtttagaagttcttctgattctgatttttttttaatgaaatttagctacacaaaaa-aattacgtttt-attttact 18676113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 36481538 - 36481607
Alignment:
Q  107 taaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgatt 178  Q
    ||||||||||||||  ||||||| ||||| ||||  ||  |||| |||||| ||||||||||||||||||||    
T  36481538 taaatttcacctct--ttcacttaatttttttttaattcctttcatgtttagaagttcttctgattctgatt 36481607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 42076249 - 42076366
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    |||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  42076249 ggtaaatttcacctatctttcacttaattttattttgttttgtttcatgtttaaaagttcttttgattctgattttttaatgaagcttatctacacaaaa 42076348  T
Q  205 agaattgcgttttgattt 222  Q
    ||||||||||||||||||    
T  42076349 agaattgcgttttgattt 42076366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 107 - 228
Target Start/End: Complemental strand, 36515077 - 36514955
Alignment:
Q  107 taaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatg-aagcttagctacacaaaaa 205  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||| || ||| |    
T  36515077 taaatttcagctctctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgattctgattttttaatgaaaactgagctgcaaaaaga 36514978  T
Q  206 gaattgcgttttgattttactga 228  Q
    |||||||||||||||||||||||    
T  36514977 gaattgcgttttgattttactga 36514955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 35875039 - 35875139
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    |||||| | |||||||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  35875039 ggtaaactccacctctcgttcacttaattttattttattttgtttcatgtttaaaagttcttctgattctgattttttaatgaagcttagttacacaaaa 35875138  T
Q  205 a 205  Q
    |    
T  35875139 a 35875139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 3628671 - 3628598
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgatt 178  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||| |||||||||||    
T  3628671 ggtaaatttcacctctctttcacttaattttattttgttttctttcatgtttaaaagttcttttgattctgatt 3628598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 34523863 - 34523760
Alignment:
Q  119 ctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaagaattgcgttttg 218  Q
    ||||||||||| ||||| || | ||| ||||| |||||| ||| |||||||||||||||| |||||| ||||||||||||||||||| |||||||||||     
T  34523863 ctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttctgattctgatt-tttaataaagcttagctacacaaaaa-aattgcgttttt 34523766  T
Q  219 atttta 224  Q
    ||||||    
T  34523765 atttta 34523760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 12531700 - 12531819
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacaca-aaa 204  Q
    |||||||  ||||||||||||||| ||||| || | ||| ||||| |||||| ||| |||||| ||||||||| |||||| ||||||||||||||| |||    
T  12531700 gtaaattatacctctctttcacttaatttttttatatttcgtttcatgtttagaagctcttcttattctgattttttaataaagcttagctacacacaaa 12531799  T
Q  205 agaattgcgttttgatttta 224  Q
    | ||||| ||||| ||||||    
T  12531800 aaaattgtgtttttatttta 12531819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 32098100 - 32097977
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctac-acaaaa 204  Q
    ||||||||||| |||||||||||| ||||| |||| ||| ||||| |||||| |||||| |||||||  |||| |||||||| |||||| ||| | ||||    
T  32098100 gtaaatttcacttctctttcacttaatttttttttatttcgtttcatgtttagaagttcatctgatttcgattttttaatgatgcttagttacaaaaaaa 32098001  T
Q  205 agaattgcgttttgattttactga 228  Q
    | |||| |||||| ||||||||||    
T  32098000 aaaattacgtttttattttactga 32097977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 43926206 - 43926129
Alignment:
Q  147 tttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaagaattgcgttttgattttact 226  Q
    |||| |||||| || ||||||||||||||||| |||| ||||  ||||||||||||||| |||| |||||| ||||||||    
T  43926206 tttcatgtttagaacttcttctgattctgattttttagtgaaatttagctacacaaaaa-aattacgtttt-attttact 43926129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 3471785 - 3471840
Alignment:
Q  152 tgtttaaaagttcttctgattctgattgttt--aatgaagcttagctacacaaaaa 205  Q
    |||||| |||||||| ||||||||||| |||  ||||||| |||||||||||||||    
T  3471785 tgtttagaagttcttatgattctgattttttttaatgaagtttagctacacaaaaa 3471840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 30915208 - 30915109
Alignment:
Q  108 aaatttcacctctctttcacttcatt-ttattttgtttt--gtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    |||||||| ||||||||||||| ||| ||||||| | ||  ||||| | |||| | |||||||||||| ||||| ||||||||| |||| ||||| ||||    
T  30915208 aaatttcaactctctttcacttaattattattttttatttcgtttcatttttagacgttcttctgattatgattttttaatgaaacttaactacataaaa 30915109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 105 - 228
Target Start/End: Complemental strand, 36438275 - 36438153
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    |||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  36438275 ggtaaatttcacctatctttcacttaattttattttgttttgtttcatgtttaaaagttcttctgattctgattttttaatgaagcttagctacacacaa 36438176  T
Q  205 agaattgcgttttgattttactga 228  Q
    | |||||| |||| ||||||||||    
T  36438175 a-aattgcatttttattttactga 36438153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 26633504 - 26633603
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    |||||||||||||||||||||||| |||||||||| ||||||||| |||||| | |||||||||||||||||| ||||||||||||||||||||||||||    
T  26633504 gtaaatttcacctctctttcacttaattttattttattttgtttcatgtttagacgttcttctgattctgattttttaatgaagcttagctacacaaaaa 26633603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 40737924 - 40737829
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacaca 201  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||| | ||||||||||||| ||||||||| | ||||||||||||||||||||||    
T  40737924 ggtaaatttcacctctctttcactttattttattttattttgtttcat-tttaaaagttcttttgattctgactttttaatgaagcttagctacaca 40737829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 225
Target Start/End: Original strand, 42312150 - 42312270
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgtttt-gtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    |||||||||||||||||||||||| ||||| ||||  ||| ||||| |||||| |||||||||||||||| ||| |||||||||||||| ||||||| ||    
T  42312150 gtaaatttcacctctctttcacttaattttttttttatttcgtttcatgtttagaagttcttctgattctaattttttaatgaagcttaactacacacaa 42312249  T
Q  205 agaattgcgttttgattttac 225  Q
    | ||||| ||||| |||||||    
T  42312250 aaaattgtgtttttattttac 42312270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 7369967 - 7370053
Alignment:
Q  141 gttttgtttcgtgtttaaaagttcttctgattctgattgttt-aatgaagcttagctacacaaaaagaattgcgttttgattttact 226  Q
    |||||||||||| |||||||||| |||||||||||||| ||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  7369967 gttttgtttcgtatttaaaagtttttctgattctgatttttttaatgaagcttagttacacaagaagaattgcgttttgattttact 7370053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 30739264 - 30739365
Alignment:
Q  105 ggtaaatttcacctctctttcacttc-attttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaa 203  Q
    |||||||||||||||||||||||||  |||||||||| |||  |||| ||| || |||||||||||||||||||| |||||||||| |||||||||||||    
T  30739264 ggtaaatttcacctctctttcacttttattttattttatttcatttcatgtatagaagttcttctgattctgattttttaatgaagtttagctacacaaa 30739363  T
Q  204 aa 205  Q
    ||    
T  30739364 aa 30739365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 1366150 - 1366267
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    |||||||  ||||||||||||||| ||||| || | ||| ||||| |||||| ||| |||||||||||||||| |||||| |||||||||||||||||||    
T  1366150 gtaaattctacctctctttcacttaatttttttgtatttcgtttcatgtttacaagctcttctgattctgattttttaataaagcttagctacacaaaaa 1366249  T
Q  206 gaattgcgttttgatttta 224  Q
     |||| |||||| ||||||    
T  1366250 -aattacgtttttatttta 1366267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 205
Target Start/End: Complemental strand, 773806 - 773707
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    |||||||||||| |||||||||||| ||||| |||| ||| ||||| |||||| |||||||||||||| ||||| |||||||||||||| ||||| ||||    
T  773806 ggtaaatttcacatctctttcacttaatttt-ttttatttcgtttcatgtttagaagttcttctgattttgattttttaatgaagcttaactacataaaa 773708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 3799685 - 3799593
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctaca 199  Q
    ||||||||||||||||||||||||| |||||  ||| ||| ||||| |||||| |||||||||||||||||||| || ||||||| |||||||||    
T  3799685 ggtaaatttcacctctctttcacttaatttt--tttatttcgtttcatgtttagaagttcttctgattctgatttttaaatgaagtttagctaca 3799593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 41908320 - 41908416
Alignment:
Q  107 taaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctga-ttgtttaatgaagcttagctacacaaa 203  Q
    |||||||||||||| |||||||| ||||| |||| ||||||||| |||||| ||||| |||||||||||| || ||||||||||||||| ||||||||    
T  41908320 taaatttcacctctttttcacttaatttt-ttttattttgtttcatgtttagaagtttttctgattctgatttttttaatgaagcttagttacacaaa 41908416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 41852221 - 41852127
Alignment:
Q  107 taaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaa 203  Q
    |||||||||| |||||||||||| |||||  ||| ||| ||||   ||||||||||||||||||||||||||  |||||||| ||||||||||||||    
T  41852221 taaatttcacatctctttcacttaatttt--tttatttcgtttgacgtttaaaagttcttctgattctgatttcttaatgaaacttagctacacaaa 41852127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 28590067 - 28589948
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacaca-aa 203  Q
    |||||| |||||||||||| ||||| |||||  | | |||  |||| |||||| || ||||||||||||||||| |||||||||| ||||||||||| ||    
T  28590067 ggtaaaattcacctctcttccacttaatttt--tctatttcatttcatgtttagaaattcttctgattctgattttttaatgaagtttagctacacaaaa 28589970  T
Q  204 aagaattgcgttttgattttac 225  Q
    || |||| |||||| |||||||    
T  28589969 aaaaattacgtttttattttac 28589948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 25610218 - 25610306
Alignment:
Q  117 ctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    ||||||||||||| ||||| || | ||| ||||| |||||  ||| |||||||||||||||| |||||| ||||||||||||| |||||    
T  25610218 ctctctttcacttaatttttttgtatttcgtttcatgtttggaagctcttctgattctgattttttaataaagcttagctacaaaaaaa 25610306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 205
Target Start/End: Complemental strand, 40841165 - 40841066
Alignment:
Q  108 aaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctga--ttgtttaatgaagcttagctacacaaaaa 205  Q
    ||||||||||| ||||||| ||  |||| |||| ||| ||||| |||||| |||||||||| |||||||  || |||||| |||||||||||||||||||    
T  40841165 aaatttcacctatctttcaattattttttttttatttcgtttcatgtttagaagttcttctaattctgattttttttaataaagcttagctacacaaaaa 40841066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 40001634 - 40001517
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    ||||||| |||||||||||||||| ||||| || | ||| ||||| |||||| ||| |||||| |||||  || | |||| ||||||| |||||||||||    
T  40001634 gtaaattccacctctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttctaattctatttttctaataaagcttaactacacaaaaa 40001535  T
Q  206 gaattgcgttttgatttta 224  Q
     |||||| |||| ||||||    
T  40001534 -aattgcatttttatttta 40001517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 7366827 - 7366867
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgtttt 145  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  7366827 ggtaaatttcacctctctttcacttaattttattttgtttt 7366867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 32956939 - 32957014
Alignment:
Q  137 ttttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaagaattgc 212  Q
    |||| ||| ||||| |||||| |||||||| || || ||||| ||||||||||||||||| |||||||| ||||||    
T  32956939 ttttttttggtttcatgtttagaagttcttttggttttgattttttaatgaagcttagcttcacaaaaaaaattgc 32957014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 28105795 - 28105848
Alignment:
Q  146 gtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctaca 199  Q
    ||||| |||||||||||| |||||||||| |||  |||||||||||||||||||    
T  28105795 gtttcatgtttaaaagtttttctgattctaatttcttaatgaagcttagctaca 28105848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 44002815 - 44002762
Alignment:
Q  147 tttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacac 200  Q
    |||| |||||| |||||||||||||| | ||| |||||||||||||||||||||    
T  44002815 tttcatgtttagaagttcttctgattataattttttaatgaagcttagctacac 44002762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 7636206 - 7636146
Alignment:
Q  147 tttcgtgtttaaaagttcttctgattctgattgttt--aatgaagcttagctacacaaaaa 205  Q
    |||| |||||| ||||| |||||||||||||| |||  ||||||| |||||||||||||||    
T  7636206 tttcatgtttagaagttgttctgattctgatttttttcaatgaagtttagctacacaaaaa 7636146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 226
Target Start/End: Complemental strand, 12251208 - 12251088
Alignment:
Q  107 taaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctga-----ttgtttaatgaagcttagctacaca 201  Q
    ||||||||||||||  ||||||| ||||| ||||  ||  |||| |||||| ||||||||||||||||||     || |||||||||  |||||||||||    
T  12251208 taaatttcacctct--ttcacttaatttttttttaattcctttcatgtttagaagttcttctgattctgatttttttttttaatgaaatttagctacaca 12251111  T
Q  202 aaaagaattgcgttttgattttact 226  Q
    |||| |||| |||||| ||||||||    
T  12251110 aaaa-aattacgtttt-attttact 12251088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 21145496 - 21145562
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattc 173  Q
    ||||||||||||||| ||||||||| ||||  |||| ||| ||||| ||| ||||||||||||| ||||    
T  21145496 ggtaaatttcacctccctttcacttaattt--ttttatttcgtttcatgtataaaagttcttctaattc 21145562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 26282398 - 26282358
Alignment:
Q  165 ttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    |||||||||||||| |||||| ||||||| |||||||||||    
T  26282398 ttctgattctgattttttaataaagcttaactacacaaaaa 26282358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 24556946 - 24557063
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||  |||||||||||||||||||||||| ||| || ||||||||||||||||||||||    
T  24556946 ggtaaatttcacctct--ttcacttaattttattttgttttgtt--gtgtttaaaagttcttctgattctaatttttcaatgaagcttagctacacaaaa 24557041  T
Q  205 agaattgcgttttgattttact 226  Q
    ||||||||||||||||||||||    
T  24557042 agaattgcgttttgattttact 24557063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 17674278 - 17674156
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||| ||| ||||||||||    
T  17674278 ggtaaatttcacctatttttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatatgactttttaatgaagtttaactacacaaaa 17674179  T
Q  205 agaattgcgttttgattttactg 227  Q
    ||||||| |||||||||||||||    
T  17674178 agaattgtgttttgattttactg 17674156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 227
Target Start/End: Complemental strand, 22386758 - 22386638
Alignment:
Q  107 taaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaag 206  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||||||||||  |||| ||||||||||| ||||||||| |||| ||||| |||||     
T  22386758 taaatttcacatctctttcacttaattttattttattttgtttcgtgtttaaaaaatcttatgattctgattttttaatgaaacttaactacaaaaaaaa 22386659  T
Q  207 aattgcgttttgattttactg 227  Q
    |||||| ||||||||||||||    
T  22386658 aattgcattttgattttactg 22386638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 13120790 - 13120708
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatga 187  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13120790 ggtaaatttcacctctctatcacttaattttattttgttttgtttcgtgtttaaaagttcttctgattctgattttttaatga 13120708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 44836649 - 44836529
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    |||||||||||| |||||||||||| |||||||||| ||||||||| ||||||||||||||| ||||||| ||| |||||| || |||||||||||| ||    
T  44836649 ggtaaatttcacatctctttcacttaattttattttattttgtttcatgtttaaaagttcttatgattctaattttttaat-aaacttagctacacagaa 44836551  T
Q  205 agaattgcgttttgattttact 226  Q
    | ||||||||||| ||||||||    
T  44836550 aaaattgcgtttttattttact 44836529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 26486297 - 26486178
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    ||||||||||||||||  |||| || |||||||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| ||    
T  26486297 ggtaaatttcacctct--ttcaattaattttattttattttgtttcatgtttaaaagttcttctgattctgatttttaaatgaagcttagctacacacaa 26486200  T
Q  205 agaattgcgttttgattttact 226  Q
    | || ||| |||| ||||||||    
T  26486199 aaaaatgcatttttattttact 26486178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 37873680 - 37873558
Alignment:
Q  106 gtaaatttcacctctctttcacttcatttt-attttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    |||||||||||||||||||||||| ||||| |||||  |||||||| ||||||||||||||| ||||||| ||| |||||||||||||| ||||||| ||    
T  37873680 gtaaatttcacctctctttcacttaatttttattttagtttgtttcatgtttaaaagttcttatgattctaattttttaatgaagcttaactacacacaa 37873581  T
Q  205 agaattgcgttttgattttactg 227  Q
    | |||| | |||| |||||||||    
T  37873580 aaaattacatttttattttactg 37873558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 50371275 - 50371372
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaa 203  Q
    ||||||||||||||||||||||||| ||||| |||| ||| ||||| |||||| |||||||| ||||||||||| ||||||||||||||||||||||||    
T  50371275 ggtaaatttcacctctctttcacttaatttt-ttttatttcgtttcatgtttagaagttcttatgattctgattttttaatgaagcttagctacacaaa 50371372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 42740256 - 42740367
Alignment:
Q  113 tcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaagaattgc 212  Q
    |||||| |||||||||| |||||||||||||||||||| ||||||||||||||||   |||||||| |||||||||| ||| | ||||||||| |||| |    
T  42740256 tcacctatctttcacttaattttattttgttttgtttcatgtttaaaagttcttc---ttctgattttttaatgaagtttaaccacacaaaaaaaattac 42740352  T
Q  213 gttttgattttactg 227  Q
    ||||| |||||||||    
T  42740353 gtttttattttactg 42740367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 225
Target Start/End: Original strand, 15441430 - 15441550
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagctt--agctacacaa 202  Q
    ||||||||||||||||||||||||| ||||| |||| ||  ||||| |||||| |||||||||||||| ||||| |||||||||||||  |  |||||||    
T  15441430 ggtaaatttcacctctctttcactt-atttt-ttttattccgtttcatgtttagaagttcttctgattttgattttttaatgaagcttaaatatacacaa 15441527  T
Q  203 aaagaattgcgttttgattttac 225  Q
    ||| ||||||||||| |||||||    
T  15441528 aaaaaattgcgtttttattttac 15441550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 9777554 - 9777655
Alignment:
Q  105 ggtaaatttcacctctctttcacttca-ttttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaa 203  Q
    |||||||||||| |||||||||||| | |||| |||| ||| ||||| |||||| ||||| |||| ||||||||| |||||||||| ||||||||| |||    
T  9777554 ggtaaatttcacttctctttcacttaattttttttttatttagtttcatgtttagaagttattctaattctgattttttaatgaagtttagctacaaaaa 9777653  T
Q  204 aa 205  Q
    ||    
T  9777654 aa 9777655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 225
Target Start/End: Original strand, 5560625 - 5560743
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttat-tttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    ||||||||||  ||||||||||||  |||| | ||| ||||||||| |||||| |||||||| |||||| |||  |||||||||| ||||| ||| ||||    
T  5560625 gtaaatttca--tctctttcacttatttttttatttattttgtttcatgtttagaagttcttttgattcagatcttttaatgaagtttagccacaaaaaa 5560722  T
Q  205 agaattgcgttttgattttac 225  Q
    | ||||||||||| |||||||    
T  5560723 aaaattgcgtttttattttac 5560743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 27703453 - 27703362
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacaca 201  Q
    ||||||||||||||||| ||||||| ||||||||| ||||     | |||||| ||||| || ||||||||||| |||||  ||||||| |||||||    
T  27703453 ggtaaatttcacctctccttcacttaattttatttcgttt-----catgtttagaagttattatgattctgattttttaacaaagcttaactacaca 27703362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 39080503 - 39080451
Alignment:
Q  147 tttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctaca 199  Q
    |||| |||||| |||||||| ||||||||||| || |||||||||||||||||    
T  39080503 tttcatgtttagaagttcttatgattctgatttttcaatgaagcttagctaca 39080451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 1269692 - 1269793
Alignment:
Q  106 gtaaatttcacctctctttcacttcatt--ttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaat-gaagcttagctacacaa 202  Q
    ||||||||||||| |||||||||| |||  || |||| ||| ||||| |||||| |||||||  ||||||||||| ||||||  ||||||| ||||||||    
T  1269692 gtaaatttcacctttctttcactt-attaatttttttatttcgtttcatgtttagaagttctattgattctgattttttaataaaagcttaactacacaa 1269790  T
Q  203 aaa 205  Q
    |||    
T  1269791 aaa 1269793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 30004815 - 30004711
Alignment:
Q  122 tttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgatt--gtttaatgaagcttagctacacaaaaagaattgcgttttga 219  Q
    |||||||| ||||| ||||  ||  |||| |||||| ||||||||||||||||||||   || ||||||| ||||||||||||||| |||| |||||| |    
T  30004815 tttcacttaatttttttttaattcctttcatgtttagaagttcttctgattctgatttaattcaatgaagtttagctacacaaaaa-aattacgtttt-a 30004718  T
Q  220 ttttact 226  Q
    |||||||    
T  30004717 ttttact 30004711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 12971608 - 12971664
Alignment:
Q  167 ctgattctgattgtttaatgaagcttagctacacaaaaagaattgcgttttgatttta 224  Q
    |||||||||||| |||||| ||| ||||||| ||||||| ||||||||||| ||||||    
T  12971608 ctgattctgattttttaataaagtttagctatacaaaaa-aattgcgtttttatttta 12971664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 25930791 - 25930862
Alignment:
Q  154 tttaaaagttcttctgattctgattgttt--aatgaagcttagctacacaaaaagaattgcgttttgatttta 224  Q
    |||| ||| |||||||||||||||| |||  ||||||| ||||||||||||||| |||| |||||| ||||||    
T  25930791 tttagaagctcttctgattctgattttttttaatgaagtttagctacacaaaaa-aattacgtttttatttta 25930862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 33124551 - 33124495
Alignment:
Q  119 ctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctga 176  Q
    ||||||||||| ||||| ||||  || ||||| |||||||||||||||||||||||||    
T  33124551 ctctttcacttaatttt-ttttaattcgtttcatgtttaaaagttcttctgattctga 33124495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 105 - 227
Target Start/End: Original strand, 46904882 - 46905004
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| |||||||| ||    
T  46904882 ggtaaatttcacctctctttcacttaattttattttgttttgtttcatgtttaaaagttcttcttattctgattttttaatgaagcttcgctacacataa 46904981  T
Q  205 agaattgcgttttgattttactg 227  Q
    | |||||  |||| |||||||||    
T  46904982 aaaattgaatttttattttactg 46905004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 27303325 - 27303425
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| ||||||    
T  27303325 ggtaaatttcacctctctttcacttaattttattttgttttgtttcatgtttaaaagttcttctgattctgattttttaatgaagcttaactatacaaaa 27303424  T
Q  205 a 205  Q
    |    
T  27303425 a 27303425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 7767206 - 7767327
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    |||||||||||| |||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| ||    
T  7767206 ggtaaatttcacatctctttcacttaattttattttattttgtttcatgtttaaaagttcttctgattctgactttttaatgaagcttagctacacacaa 7767305  T
Q  205 agaattgcgttttgattttact 226  Q
    | || |||||||| || |||||    
T  7767306 aaaaatgcgtttttatcttact 7767327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 51147077 - 51147177
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |||| |||||    
T  51147077 ggtaaattttatctctctttcacttcattttattttgttttgtttcgtgtttaagagttcttctgattatgattttttaatgaagcttacctacgcaaaa 51147176  T
Q  205 a 205  Q
    |    
T  51147177 a 51147177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 40152053 - 40151955
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    |||||||||||||||||||||| || ||||| |||| ||| ||||| | |||||||||| || ||||||||||| |||||||||||||| ||||||||||    
T  40152053 ggtaaatttcacctctctttcatttaatttt-ttttatttcgtttcatatttaaaagtttttatgattctgattttttaatgaagcttaactacacaaaa 40151955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 15998424 - 15998540
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    |||||||||||| |||||||||||| |||||  | ||||| ||||| |||||| |||||||| ||||| |     |||||||||| |||| |||||||||    
T  15998424 ggtaaatttcacatctctttcacttaatttt--tctgtttcgtttcatgtttagaagttcttatgatttt-----tttaatgaagtttagttacacaaaa 15998516  T
Q  205 agaattgcgttttgattttactga 228  Q
    | ||||||||||| ||||||||||    
T  15998517 ataattgcgtttttattttactga 15998540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 19965801 - 19965705
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgat-tgtttaatgaagcttagctacaca 201  Q
    ||||||||||||||||||||||||| ||||| |||| |||  |||| |||||| |||||||||||||| |||| | |||||||||||  |||||||||    
T  19965801 ggtaaatttcacctctctttcactt-atttttttttatttcctttcatgtttagaagttcttctgattttgatatttttaatgaagcaaagctacaca 19965705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 48626953 - 48626835
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgtttt--gtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaa 203  Q
    |||||||  ||||||||||||||| ||||| |||||| ||  ||||| |||||| ||| |||||||||||| ||| ||| || ||| ||| |||||||||    
T  48626953 gtaaattctacctctctttcactt-atttttttttgtatttcgtttcatgtttagaagctcttctgattctaatttttttataaagtttaactacacaaa 48626855  T
Q  204 aagaattgcgttttgatttta 224  Q
    || ||||||||||| ||||||    
T  48626854 aa-aattgcgtttttatttta 48626835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 21596516 - 21596566
Alignment:
Q  147 tttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagcta 197  Q
    |||| |||||| |||||||| ||||||||||| ||||||||||||||||||    
T  21596516 tttcatgtttagaagttcttttgattctgattttttaatgaagcttagcta 21596566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 226
Target Start/End: Complemental strand, 25598965 - 25598886
Alignment:
Q  147 tttcgtgtttaaaagttcttctgattctga--ttgtttaatgaagcttagctacacaaaaagaattgcgttttgattttact 226  Q
    |||| |||||| ||||||||||||||||||  || |||||||||| ||||||||||||||| |||| |||||| ||||||||    
T  25598965 tttcatgtttagaagttcttctgattctgattttttttaatgaagtttagctacacaaaaa-aattacgtttt-attttact 25598886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 43905776 - 43905659
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    |||||||  ||||||||||||||| ||||| || | ||| ||||| |||||| ||| |||| |||||||  || |||| | ||||||| | |||||||||    
T  43905776 gtaaattctacctctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttatgattctatttttttagtaaagcttaacaacacaaaaa 43905677  T
Q  206 gaattgcgttttgatttta 224  Q
     ||||||||||| ||||||    
T  43905676 -aattgcgtttttatttta 43905659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 29387674 - 29387605
Alignment:
Q  107 taaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgatt 178  Q
    ||||||||||||||  ||||||| ||||| ||||   || |||| |||||| ||||||||||||||||||||    
T  29387674 taaatttcacctct--ttcacttaattttttttttaattctttcatgtttataagttcttctgattctgatt 29387605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 107 - 226
Target Start/End: Complemental strand, 35653902 - 35653783
Alignment:
Q  107 taaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaag 206  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| || | |||||||||||||| ||||||| |||     
T  35653902 taaatttcacctctctttcacttaattttattttgttttgtttcatgtttaaaagttcttctgattcggactttttaatgaagcttaactacacacaaaa 35653803  T
Q  207 aattgcgttttgattttact 226  Q
    || || ||||| ||||||||    
T  35653802 aaatgtgtttttattttact 35653783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 24449239 - 24449339
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    |||||| | |||||||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  24449239 ggtaaactccacctctcgttcacttaattttattttattttgtttcatgtttaaaagttcttctgattctgattttttaatgaagcttagttacacaaaa 24449338  T
Q  205 a 205  Q
    |    
T  24449339 a 24449339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 22423828 - 22423886
Alignment:
Q  107 taaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttct 165  Q
    |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||    
T  22423828 taaatttcacctctgtttcacttaattttattttgttttgtttcatgtttaaaagttct 22423886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 55134350 - 55134467
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    |||||||  ||||||||||||||| ||||| || | ||| ||||| |||||| ||| |||| |||| |||||| |||||| |||||||||||||||||||    
T  55134350 gtaaattctacctctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttttgatcctgattttttaataaagcttagctacacaaaaa 55134449  T
Q  206 gaattgcgttttgatttta 224  Q
     ||||| ||||| ||||||    
T  55134450 -aattgtgtttttatttta 55134467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 21791472 - 21791352
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaa 204  Q
    |||||||||||||||||||| | || |||||||||| |||  |||| |||||| |||||||||||||||| ||| |||||| ||| |||||| |||| ||    
T  21791472 ggtaaatttcacctctctttaaatttattttattttatttcatttcatgtttagaagttcttctgattctaatt-tttaataaagtttagctgcacagaa 21791374  T
Q  205 agaattgcgttttgattttactg 227  Q
    | |||||| |||  |||||||||    
T  21791373 a-aattgcatttctattttactg 21791352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 34982366 - 34982483
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    |||||||  |||||||||| |||| ||||| || | ||| ||||  |||||| || ||||||||||||||||| |||||| ||||||| |||||||||||    
T  34982366 gtaaattctacctctcttttacttaatttttttgtatttcgttttatgtttagaatttcttctgattctgatt-tttaataaagcttaactacacaaaaa 34982464  T
Q  206 gaattgcgttttgatttta 224  Q
     |||||| |||| ||||||    
T  34982465 aaattgcatttttatttta 34982483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 10575447 - 10575380
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgatt 172  Q
    ||||||||||| |||| |||||||| |||||||||| ||| ||||| |||||| ||||||||||||||    
T  10575447 ggtaaatttcatctctttttcactttattttattttatttcgtttcatgtttagaagttcttctgatt 10575380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 205
Target Start/End: Complemental strand, 26328955 - 26328853
Alignment:
Q  105 ggtaaatttcacctctctttcacttcatt-ttattttgttttgtttcgtgtttaaaagttcttctgattctgattgttt-aatgaagcttagctacacaa 202  Q
    |||||||||||||||||||| |||| ||| || |||| |||  |||| |||||| || ||||||| ||||||||| ||| ||||||| ||||||||||||    
T  26328955 ggtaaatttcacctctcttttacttaattctttttttatttcttttcatgtttagaaattcttctaattctgatttttttaatgaagtttagctacacaa 26328856  T
Q  203 aaa 205  Q
    |||    
T  26328855 aaa 26328853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 9925292 - 9925332
Alignment:
Q  160 agttcttctgattctgattgtttaatgaagcttagctacac 200  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  9925292 agttcttctgattctgattttttaataaagcttagctacac 9925332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 5545483 - 5545569
Alignment:
Q  120 tctttcacttcattttattttgtttt-gtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    |||||||||| ||||| ||||  ||| ||||| |||||| ||||||||||||||||  || |||| |||| |||||||||| |||||    
T  5545483 tctttcacttaattttttttttatttcgtttcatgtttagaagttcttctgattctatttttttactgaatcttagctacaaaaaaa 5545569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 53011896 - 53011975
Alignment:
Q  147 tttcgtgtttaaaagttcttctgattctga--ttgtttaatgaagcttagctacacaaaaagaattgcgttttgattttact 226  Q
    |||| |||||| ||||||||||||||||||  || |||||||||  ||||||||||||||| |||| |||||| ||||||||    
T  53011896 tttcatgtttagaagttcttctgattctgattttttttaatgaaatttagctacacaaaaa-aattacgtttt-attttact 53011975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 226
Target Start/End: Original strand, 27632542 - 27632659
Alignment:
Q  107 taaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctga---ttgtttaatgaagcttagctacacaaa 203  Q
    ||||||||||||||  ||||||| ||||| ||||  ||  |||| |||||| ||||||||||||||||||   || |||||||||| ||| |||||||||    
T  27632542 taaatttcacctct--ttcacttaatttt-ttttaattcctttcatgtttagaagttcttctgattctgatttttttttaatgaagtttaactacacaaa 27632638  T
Q  204 aagaattgcgttttgattttact 226  Q
    || |||| |||||| ||||||||    
T  27632639 aa-aattacgtttt-attttact 27632659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 3748492 - 3748370
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacaca-aa 203  Q
    |||||||||||| |||||||||||| ||||||||||||||| |||| | ||||||||||||||||||| ||| | |||||||||||||||||||||| ||    
T  3748492 ggtaaatttcacatctctttcacttaattttattttgttttatttcatatttaaaagttcttctgattttgactttttaatgaagcttagctacacacaa 3748393  T
Q  204 aagaattgcgttttgattttact 226  Q
    || || ||| |||| ||||||||    
T  3748392 aaaaaatgcatttttattttact 3748370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 30915284 - 30915191
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctaca 199  Q
    |||||||| | ||||||||||||| |||||||||| ||||||||| |||||| |||||||||||||||||||| |||||||||||||| |||||    
T  30915284 gtaaattttatctctctttcacttaattttattttattttgtttcatgtttataagttcttctgattctgattttttaatgaagcttaactaca 30915191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 6294394 - 6294496
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctga--ttgtttaatgaagcttagctacacaa 202  Q
    ||||||||||||||||||||||| | |||||||||| ||||||||| |||||| |||||||| |||||||||  || |||||||||||||||||||| ||    
T  6294394 ggtaaatttcacctctctttcacataattttattttattttgtttcatgtttagaagttcttttgattctgattttttttaatgaagcttagctacaaaa 6294493  T
Q  203 aaa 205  Q
    |||    
T  6294494 aaa 6294496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 11088710 - 11088811
Alignment:
Q  105 ggtaaatttcacctctctttcacttcatt-ttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaa 203  Q
    ||||||||||||||||||||||||| ||| || |||| ||| ||||| |||||| |||||||||| ||||||||| |||||||||| |||||||||||||    
T  11088710 ggtaaatttcacctctctttcacttaattctttttttatttcgtttcatgtttagaagttcttctaattctgattttttaatgaagtttagctacacaaa 11088809  T
Q  204 aa 205  Q
    ||    
T  11088810 aa 11088811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 29308390 - 29308273
Alignment:
Q  106 gtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaa 205  Q
    |||||||  ||||||||||||||| ||||| || | ||| ||||| |||||| ||| |||| ||||||||||| |||||| ||||||| |||||||||||    
T  29308390 gtaaattctacctctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttatgattctgattttttaataaagcttaactacacaaaaa 29308291  T
Q  206 gaattgcgttttgatttta 224  Q
     ||||||||||| ||||||    
T  29308290 -aattgcgtttttatttta 29308273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 21946245 - 21946317
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgatt 178  Q
    |||||||| |||||||||||||||| |||| ||||||||||||||| | |||||||||| ||||||||||||||    
T  21946245 ggtaaattccacctctctttcacttaattt-attttgttttgtttcatatttaaaagttattctgattctgatt 21946317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 1092952 - 1092847
Alignment:
Q  118 tctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaagaattgcgtttt 217  Q
    |||||||||||| ||||| || | ||| ||||| |||||| ||| |||| ||||||| ||| |||||| ||||||||||||| ||||| |||||||||||    
T  1092952 tctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttttgattctaattttttaataaagcttagctacataaaaa-aattgcgtttt 1092854  T
Q  218 gatttta 224  Q
     ||||||    
T  1092853 tatttta 1092847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 350555 - 350658
Alignment:
Q  105 ggtaaatttcacctct--ctttcacttcattttattttgttttgtttcgtgtttaaaagttctt-ctgattctgattgtttaatgaagcttagctacaca 201  Q
    |||||||||||||| |  |||||| || ||||| |||| ||| ||||| |||||| |||||||| || ||||| ||| |||||||||| |||||||||||    
T  350555 ggtaaatttcacctatatctttcatttaatttttttttatttcgtttcatgtttagaagttctttctaattctaattttttaatgaagtttagctacaca 350654  T
Q  202 aaaa 205  Q
    ||||    
T  350655 aaaa 350658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 1690600 - 1690523
Alignment:
Q  146 gtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaaaagaattgcgttttgatttta 224  Q
    ||||| |||||| ||| | |||||||||||||| ||| || ||| ||||||||||||||| |||||| |||| ||||||    
T  1690600 gtttcatgtttagaagcttttctgattctgatttttttataaagtttagctacacaaaaa-aattgcatttttatttta 1690523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 19231753 - 19231865
Alignment:
Q  105 ggtaaatttcacctctctttcacttcattttattttgttt---------tgtttcgtgtttaaaag---ttcttctgattctgattgtttaatgaagctt 192  Q
    ||||||||||||||||||||||||| ||||| |||| |||         |||||| |||||| |||   ||||||||||||| ||| |||||||||||||    
T  19231753 ggtaaatttcacctctctttcacttaattttttttttttttttatattctgtttcatgtttagaagttcttcttctgattcttattttttaatgaagctt 19231852  T
Q  193 agctacacaaaaa 205  Q
    || || |||||||    
T  19231853 agttatacaaaaa 19231865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 226
Target Start/End: Original strand, 2618535 - 2618613
Alignment:
Q  147 tttcgtgtttaaaagttcttctgattctga-ttgtttaatgaagcttagctacacaaaaagaattgcgttttgattttact 226  Q
    |||| ||||||||||||||||| ||||||| || |||||||||  ||| ||||||||||| |||| |||||| ||||||||    
T  2618535 tttcatgtttaaaagttcttcttattctgatttttttaatgaaatttaactacacaaaaa-aattacgtttt-attttact 2618613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 178
Target Start/End: Complemental strand, 3514770 - 3514702
Alignment:
Q  107 taaatttcacctctctttcacttcattttattttgttttgtttcgtgtttaaaagttcttctgattctgatt 178  Q
    ||||||||||||||  ||||||| ||||| ||||  ||  |||| |||||||||||||||||||||||||||    
T  3514770 taaatttcacctct--ttcacttaatttt-ttttaattcctttcatgtttaaaagttcttctgattctgatt 3514702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 99097 - 99180
Alignment:
Q  146 gtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctac-acaaaaagaattgcgttttgattttactga 228  Q
    ||||| |||||| |||||||||||||||||||| ||||||||||  ||||||| | ||||| |||||| |||| ||||||||||    
T  99097 gtttcatgtttagaagttcttctgattctgattttttaatgaaggctagctacaaaaaaaaaaattgcatttttattttactga 99180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 203
Target Start/End: Complemental strand, 8336 - 8246
Alignment:
Q  108 aaatttcacctctctttcacttcattttat-tttgttttgtttcgtgtttaaaagttcttctgattctgattgtttaatgaagcttagctacacaaa 203  Q
    |||||||||||||||||| ||| ||||| | ||| ||| ||||| ||||| |||||||      |||||||| ||||||||||||||||||||||||    
T  8336 aaatttcacctctctttcgcttaattttttatttatttcgtttcatgtttgaaagttc------ttctgattttttaatgaagcttagctacacaaa 8246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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