View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7177_low_2 (Length: 515)
Name: NF7177_low_2
Description: NF7177
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7177_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Original strand, 34416109 - 34416575
Alignment:
| Q |
19 |
gtacaggttcgttgcatctcaattggtatcgtaaatcgtttgagtatatgaaaccctgaattaattatgaaatttcttcaagtaaaaactaaatgatagt |
118 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34416109 |
gtacaggtttgttgcatctcaattggtatcgtaaatcgtttgagtatatgaaaccctgaattaattatgaaatttcttcaagtaaaaactaaatgatagt |
34416208 |
T |
|
| Q |
119 |
aatagtttgttttgtgcttttaattttccttggcgtttgattgcttaaaatttttcagcatgtgctggagcatggaaagccacatgaacgtaccgcgata |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34416209 |
aatagtttgttttgtgcttttaattttccttggcgtttgattgcttaaaatttttcagcatgtgctggagcatggaaagccacatgaacgtaccgcgata |
34416308 |
T |
|
| Q |
219 |
ataaaggaattcactgg-cagatagtgcagatgagccagcagaagtttgcttctaatgttatagaaaagtgtctctcttttggaacacctacggagcgtc |
317 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34416309 |
ataaaggaattcactgggcagatagtgcagatgagccagcagaagtttgcttctaatgttatagaaaagtgtctctcttttggaacacctacggagcgtc |
34416408 |
T |
|
| Q |
318 |
aagtccttgtgaatgagatgattggttctactgatgacaatgagcctctacaggtttgtgcatgaaaatgaatccctattacatcagctcttgtttgtcg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34416409 |
aagtccttgtgaatgagatgattggttctactgatgacaatgagcctctacaggtttgtgcatgaaaatgaatccctattacatcagctcttgtttgtcg |
34416508 |
T |
|
| Q |
418 |
cgccatactccttttagtcatcttttcttattatatccaaaaattacagcttcatatagttttaatt |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34416509 |
cgccatactccttttagtcatcttttcttattatatcctaaaattacagcttcatatagttttaatt |
34416575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University