View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7178_high_1 (Length: 512)

Name: NF7178_high_1
Description: NF7178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7178_high_1
NF7178_high_1
[»] chr1 (10 HSPs)
chr1 (3-271)||(14903801-14904070)
chr1 (140-269)||(9114816-9114945)
chr1 (140-266)||(14904541-14904667)
chr1 (154-266)||(17690895-17691007)
chr1 (116-243)||(9115982-9116110)
chr1 (154-264)||(17689738-17689847)
chr1 (151-266)||(37499393-37499508)
chr1 (195-266)||(30335237-30335307)
chr1 (230-264)||(37499178-37499212)
chr1 (176-271)||(17738249-17738344)
[»] chr4 (27 HSPs)
chr4 (3-266)||(28450750-28451014)
chr4 (154-266)||(9450882-9450994)
chr4 (140-266)||(28451486-28451612)
chr4 (154-271)||(9449710-9449827)
chr4 (154-266)||(4437680-4437792)
chr4 (154-273)||(9268016-9268135)
chr4 (154-267)||(49028487-49028600)
chr4 (154-269)||(3990899-3991014)
chr4 (154-265)||(45667232-45667343)
chr4 (154-267)||(10468704-10468817)
chr4 (195-263)||(10202681-10202749)
chr4 (182-266)||(10286410-10286494)
chr4 (154-265)||(52677553-52677664)
chr4 (154-264)||(12585382-12585492)
chr4 (195-263)||(25225793-25225861)
chr4 (195-266)||(17931288-17931359)
chr4 (190-265)||(21325690-21325765)
chr4 (195-262)||(49028267-49028334)
chr4 (195-268)||(17932140-17932213)
chr4 (209-272)||(12315849-12315912)
chr4 (190-264)||(4439033-4439107)
chr4 (196-264)||(36098747-36098815)
chr4 (182-266)||(12585158-12585242)
chr4 (222-268)||(10468478-10468524)
chr4 (195-264)||(16067589-16067656)
chr4 (196-262)||(52677818-52677884)
chr4 (230-270)||(45667369-45667409)
[»] chr8 (8 HSPs)
chr8 (3-266)||(10536599-10536863)
chr8 (119-265)||(32539374-32539520)
chr8 (3-185)||(32538325-32538497)
chr8 (140-266)||(10536000-10536126)
chr8 (195-275)||(18203321-18203401)
chr8 (195-264)||(30905991-30906060)
chr8 (195-265)||(30905397-30905467)
chr8 (176-268)||(9237724-9237816)
[»] chr7 (12 HSPs)
chr7 (75-272)||(18471650-18471848)
chr7 (140-264)||(8328197-8328321)
chr7 (140-266)||(18470139-18470265)
chr7 (154-266)||(4265200-4265312)
chr7 (195-267)||(8905639-8905711)
chr7 (190-265)||(8329041-8329115)
chr7 (116-175)||(8342595-8342655)
chr7 (154-238)||(8594090-8594174)
chr7 (196-266)||(25749396-25749466)
chr7 (116-168)||(8341930-8341983)
chr7 (190-263)||(8342658-8342731)
chr7 (3-59)||(18471589-18471646)
[»] chr2 (12 HSPs)
chr2 (116-268)||(4733302-4733455)
chr2 (140-266)||(4734162-4734288)
chr2 (154-266)||(14159206-14159318)
chr2 (154-266)||(14160380-14160492)
chr2 (154-266)||(38695112-38695224)
chr2 (152-266)||(4410597-4410711)
chr2 (154-262)||(4409164-4409272)
chr2 (195-268)||(18166631-18166704)
chr2 (201-272)||(18171351-18171422)
chr2 (195-262)||(38694892-38694959)
chr2 (195-266)||(42963033-42963104)
chr2 (154-272)||(42962762-42962880)
[»] chr5 (16 HSPs)
chr5 (140-272)||(9379924-9380056)
chr5 (116-265)||(9380638-9380788)
chr5 (154-263)||(1501055-1501164)
chr5 (195-272)||(5841142-5841219)
chr5 (195-272)||(43183224-43183301)
chr5 (154-266)||(23322322-23322434)
chr5 (154-266)||(34634068-34634180)
chr5 (200-267)||(20244521-20244588)
chr5 (195-266)||(42792948-42793019)
chr5 (154-251)||(25088419-25088516)
chr5 (154-251)||(25146388-25146485)
chr5 (182-263)||(5840880-5840961)
chr5 (182-266)||(15933356-15933440)
chr5 (213-266)||(15933610-15933663)
chr5 (195-271)||(23322093-23322169)
chr5 (240-272)||(8359509-8359541)
[»] chr3 (24 HSPs)
chr3 (148-266)||(16907930-16908048)
chr3 (154-266)||(46684098-46684210)
chr3 (154-266)||(46685489-46685601)
chr3 (154-266)||(27864799-27864911)
chr3 (195-266)||(31596752-31596823)
chr3 (196-274)||(38758873-38758951)
chr3 (154-266)||(24107151-24107263)
chr3 (195-266)||(27865063-27865134)
chr3 (195-266)||(3171489-3171560)
chr3 (209-268)||(18025878-18025937)
chr3 (195-263)||(54446280-54446349)
chr3 (182-266)||(38758608-38758692)
chr3 (217-268)||(11422377-11422428)
chr3 (195-266)||(14812427-14812498)
chr3 (195-266)||(24107416-24107487)
chr3 (195-271)||(19860486-19860562)
chr3 (144-198)||(24360697-24360751)
chr3 (222-266)||(3171778-3171822)
chr3 (195-255)||(21792228-21792288)
chr3 (143-205)||(24360464-24360526)
chr3 (143-205)||(24361113-24361175)
chr3 (152-205)||(27452166-27452219)
chr3 (182-238)||(18026103-18026159)
chr3 (213-273)||(30385174-30385234)
[»] scaffold0006 (2 HSPs)
scaffold0006 (154-265)||(93633-93743)
scaffold0006 (195-243)||(93896-93944)
[»] scaffold0069 (1 HSPs)
scaffold0069 (154-264)||(19897-20007)
[»] chr6 (8 HSPs)
chr6 (154-266)||(3659176-3659287)
chr6 (154-266)||(5367639-5367750)
chr6 (154-266)||(8286788-8286900)
chr6 (154-264)||(3720052-3720163)
chr6 (154-266)||(8287389-8287501)
chr6 (234-272)||(13119207-13119245)
chr6 (222-271)||(5367402-5367451)
chr6 (182-266)||(3658952-3659036)
[»] scaffold0008 (1 HSPs)
scaffold0008 (154-263)||(266844-266953)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 3e-77; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 3 - 271
Target Start/End: Complemental strand, 14904070 - 14903801
Alignment:
Q  3 gagtttggtgtt-aagggaggtgatggagttgtttaattttgtgatggagctgatgaatagagttgataatggtggtgaattttgtagaaattctggatt 101  Q
    |||||||||||| ||||||||||||| |||| ||  |||||   |||||||||||||||||||||||| | ||||||||||||||| |||||||||||||    
T  14904070 gagtttggtgttgaagggaggtgatgaagtttttagatttttcaatggagctgatgaatagagttgatgaaggtggtgaattttgttgaaattctggatt 14903971  T
Q  102 ttaacaatgaaggggatgaagattaacagattttcacc-aatttaatggaaatgatttatttggctaacggattataagttaagggattaaaacgtaacg 200  Q
    | ||  ||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||||| |||||||| ||||||||| ||||  |||||||||||    
T  14903970 t-aatgatgaaagggatgaagattaatagattttcacccaatttaacggaaatgatttatttgactaacggactataagttaggggaccaaaacgtaacg 14903872  T
Q  201 ttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagccaaaaa 271  Q
    ||||||| |||||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  14903871 ttaataacttatgggatcaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagccaaaaa 14903801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 140 - 269
Target Start/End: Complemental strand, 9114945 - 9114816
Alignment:
Q  140 aatttaatggaaatgatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataat 239  Q
    |||||||| |||| ||||||||||||||||| ||||||| ||||||||  |||||||||||||||||| |||||||||||| ||||||| |||||||||     
T  9114945 aatttaatagaaaggatttatttggctaacgaattataaattaagggaccaaaacgtaacgttaataacttatgggaccaaaatgtaaccaacaaataac 9114846  T
Q  240 ttaagggaccaaatcattaattaagccaaa 269  Q
    ||||||||| ||||||||||||||||||||    
T  9114845 ttaagggacaaaatcattaattaagccaaa 9114816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 140 - 266
Target Start/End: Original strand, 14904541 - 14904667
Alignment:
Q  140 aatttaatggaaatgatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataat 239  Q
    |||||||  ||||||||||||||| ||||| ||||| |||||||||||  ||||||||| |||||||  |||||||||||| ||||||| |||||||||     
T  14904541 aatttaacagaaatgatttatttgactaacagattacaagttaagggaccaaaacgtaatgttaatatcttatgggaccaaaatgtaaccaacaaataac 14904640  T
Q  240 ttaagggaccaaatcattaattaagcc 266  Q
    ||||||||| |||||||||||||||||    
T  14904641 ttaagggactaaatcattaattaagcc 14904667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 17690895 - 17691007
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    |||||||||||||||  || ||||||||||||||  |||||||||||||||||| |||||||||||  |  |||| ||||||||| ||||||||||||||    
T  17690895 gatttatttggctaatagaatataagttaagggaccaaaacgtaacgttaataacttatgggaccagaacataaccaacaaataacttaagggaccaaat 17690994  T
Q  254 cattaattaagcc 266  Q
    |||||||||||||    
T  17690995 cattaattaagcc 17691007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 9115982 - 9116110
Alignment:
Q  116 gatgaagattaacagattttcaccaa-tttaatggaaatgatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgg 214  Q
    |||||||||||||||  ||| || || ||||| ||||||||||||||| ||||||||||||||||||||| ||  |||||| ||||||||||| |||||     
T  9115982 gatgaagattaacagtattttacaaaatttaacggaaatgatttatttagctaacggattataagttaagagaccaaaacgaaacgttaataacttatga 9116081  T
Q  215 gaccaatatgtaactaacaaataatttaa 243  Q
    |||||| ||||||| ||||||||| ||||    
T  9116082 gaccaaaatgtaaccaacaaataacttaa 9116110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 17689847 - 17689738
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    ||||||||| ||||||||| |||||||||||||| ||||| |||||||| |||| ||||| |||||| | ||||  ||||||||| ||||||||||||||    
T  17689847 gatttatttagctaacggaatataagttaagggactaaaatgtaacgtttataacttatgagaccaa-acgtaatcaacaaataacttaagggaccaaat 17689749  T
Q  254 cattaattaag 264  Q
    |||||||||||    
T  17689748 cattaattaag 17689738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 266
Target Start/End: Original strand, 37499393 - 37499508
Alignment:
Q  151 aatgatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggacca 250  Q
    ||||||||||||||||||| |||  ||| ||||| ||  |||   |||| ||||||| ||||| |||||| ||||||| ||||||||| ||||| |  ||    
T  37499393 aatgatttatttggctaacagatactaacttaagagacgaaattataacattaataacttatgagaccaaaatgtaaccaacaaataacttaagaggtca 37499492  T
Q  251 aatcattaattaagcc 266  Q
    ||||||||||||||||    
T  37499493 aatcattaattaagcc 37499508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 30335237 - 30335307
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcc 266  Q
    ||||||||||||| ||||| ||| ||  ||||| |||||||||| |||| |||||| |||||||||||||||    
T  30335237 gtaacgttaataacttatgagactaaagtgtaagtaacaaataacttaa-ggaccacatcattaattaagcc 30335307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 37499212 - 37499178
Alignment:
Q  230 aacaaataatttaagggaccaaatcattaattaag 264  Q
    ||||||||| |||||||||||||||||||||||||    
T  37499212 aacaaataacttaagggaccaaatcattaattaag 37499178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 17738344 - 17738249
Alignment:
Q  176 taagttaagggattaaaacgtaacgtt-aataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagccaaaaa 271  Q
    ||||||||||||| |||||| ||| || ||||||| | |||||||| | | ||| || |||||| |||||||||||||  | |||||||||||||||    
T  17738344 taagttaagggatcaaaacgaaacttttaataattaa-gggaccaaaacgaaacaaaaaaataagttaagggaccaaaagaataattaagccaaaaa 17738249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 3 - 266
Target Start/End: Complemental strand, 28451014 - 28450750
Alignment:
Q  3 gagtttggtgtt-aagggaggtgatggagttgtttaattttgtgatggagctgatgaatagagttgataatggtggtgaattttgtagaaattctggatt 101  Q
    |||||||||||| ||||||||||||| |||| ||  |||||   |||||||||||||||||||||||| | ||||||||||||||| |||||||||||||    
T  28451014 gagtttggtgttgaagggaggtgatgaagtttttagatttttcaatggagctgatgaatagagttgatgaaggtggtgaattttgttgaaattctggatt 28450915  T
Q  102 ttaacaatgaaggggatgaagattaacagattttcacc-aatttaatggaaatgatttatttggctaacggattataagttaagggattaaaacgtaacg 200  Q
    | ||  ||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||| ||||||||| ||||  ||||||||||     
T  28450914 t-aatgatgaaagggatgaagattaacagattttcacccaatttaacggaaatgatttatttgactaacggactataagttaggggaccaaaacgtaaca 28450816  T
Q  201 ttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcc 266  Q
    ||||||| |||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  28450815 ttaataacttatgggatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaagcc 28450750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 9450882 - 9450994
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    |||||||||||||||| || ||| ||||||||||  |||||||||||||||||| |||||||||||| | ||||| ||||||||| ||||||||||||||    
T  9450882 gatttatttggctaacagagtatgagttaagggaccaaaacgtaacgttaataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaaat 9450981  T
Q  254 cattaattaagcc 266  Q
    |||||||||||||    
T  9450982 cattaattaagcc 9450994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 140 - 266
Target Start/End: Original strand, 28451486 - 28451612
Alignment:
Q  140 aatttaatggaaatgatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataat 239  Q
    ||||||| ||||| |||||||||| ||||| ||||| |||||||||||  ||||||||| |||||||  ||||| |||||| ||||||| |||||||||     
T  28451486 aatttaacggaaaggatttatttgactaacagattacaagttaagggaccaaaacgtaatgttaatatcttatgagaccaaaatgtaaccaacaaataac 28451585  T
Q  240 ttaagggaccaaatcattaattaagcc 266  Q
    ||||||||| |||||||||||||||||    
T  28451586 ttaagggactaaatcattaattaagcc 28451612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 154 - 271
Target Start/End: Complemental strand, 9449827 - 9449710
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    |||||| ||||||||| || ||| ||| ||||||| |||||||||||||||||| ||||| |||||| | ||||| ||||||||| |||| |||||||||    
T  9449827 gatttacttggctaacagagtatgagtcaagggatcaaaacgtaacgttaataacttatgagaccaaaacgtaaccaacaaataacttaatggaccaaat 9449728  T
Q  254 cattaattaagccaaaaa 271  Q
    ||||||||||||| ||||    
T  9449727 cattaattaagcctaaaa 9449710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 4437792 - 4437680
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    |||||||||||||||| || | ||| |||| |||  |||||||||||||||||| ||||||||||||  |||||| |||||||||||||| ||||||||     
T  4437792 gatttatttggctaacagagtctaacttaaaggaccaaaacgtaacgttaataacttatgggaccaaattgtaaccaacaaataatttaatggaccaaac 4437693  T
Q  254 cattaattaagcc 266  Q
    |||||||||||||    
T  4437692 cattaattaagcc 4437680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 9268135 - 9268016
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    ||||||||||||||||  ||  ||| ||||||||  |||  ||||| ||||||| |||||||||||| ||||||| || |||||| ||||||||||||||    
T  9268135 gatttatttggctaacaaatactaacttaagggaccaaattgtaactttaataacttatgggaccaaaatgtaaccaataaataacttaagggaccaaat 9268036  T
Q  254 cattaattaagccaaaaaat 273  Q
    ||||||||||||||||||||    
T  9268035 cattaattaagccaaaaaat 9268016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 154 - 267
Target Start/End: Original strand, 49028487 - 49028600
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    ||||||||||||||||  ||  ||| ||||||||  |||  ||||| |||||||||||||||||||| ||||||| || |||||| ||||||||||||||    
T  49028487 gatttatttggctaacaaatactaacttaagggaccaaattgtaacattaataatttatgggaccaaaatgtaaccaataaataacttaagggaccaaat 49028586  T
Q  254 cattaattaagcca 267  Q
    ||||||||||||||    
T  49028587 cattaattaagcca 49028600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 154 - 269
Target Start/End: Original strand, 3990899 - 3991014
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    |||||||||||||||  |||  ||| ||||||||  |||  ||||||||||||| |||||||||||| ||||||| ||||| ||| ||||||||||||||    
T  3990899 gatttatttggctaatagatattaacttaagggaccaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaattaacttaagggaccaaat 3990998  T
Q  254 cattaattaagccaaa 269  Q
    || |||||||||||||    
T  3990999 caataattaagccaaa 3991014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 154 - 265
Target Start/End: Complemental strand, 45667343 - 45667232
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    |||||||||||||||| |||  ||| ||||   || |||  ||||||||||||| ||||| |||||| ||||||| ||||||||| ||||||||||||||    
T  45667343 gatttatttggctaacagatattaaattaaaaaatcaaattgtaacgttaataacttatgagaccaaaatgtaaccaacaaataacttaagggaccaaat 45667244  T
Q  254 cattaattaagc 265  Q
    ||||||||||||    
T  45667243 cattaattaagc 45667232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 267
Target Start/End: Original strand, 10468704 - 10468817
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    |||||||||||||| | |||  ||| |||| |||  |||  ||||||||||||| ||||| |||||| ||||||| ||||||||| ||||||||||||||    
T  10468704 gatttatttggctagcagatactaacttaacggaccaaattgtaacgttaataacttatgagaccaaaatgtaaccaacaaataacttaagggaccaaat 10468803  T
Q  254 cattaattaagcca 267  Q
     |||||||||||||    
T  10468804 gattaattaagcca 10468817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 10202749 - 10202681
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaa 263  Q
    |||||||||||||||||||||||||| ||||||| | |||||||||||| ||| |||||||||||||||    
T  10202749 gtaacgttaataatttatgggaccaaaatgtaaccagcaaataatttaaaggatcaaatcattaattaa 10202681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 10286494 - 10286410
Alignment:
Q  182 aagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcc 266  Q
    ||||||| |||  ||||||||||||| | ||||||| || ||||||| ||||||||| |||||||||||||||||||||||||||    
T  10286494 aagggatcaaattgtaacgttaataactaatgggactaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 10286410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 154 - 265
Target Start/End: Complemental strand, 52677664 - 52677553
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    ||||||||||||||||  ||  ||| |||| |||  |||  ||||||||||||| ||||||||||||  |||||| ||||||||| ||||||||||||||    
T  52677664 gatttatttggctaacatatactaacttaatggaccaaattgtaacgttaataacttatgggaccaaattgtaaccaacaaataacttaagggaccaaat 52677565  T
Q  254 cattaattaagc 265  Q
     |||||||||||    
T  52677564 aattaattaagc 52677553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 264
Target Start/End: Original strand, 12585382 - 12585492
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    ||||||||||||||||  ||  ||| ||||||||  |||  |||| |||||||| ||||| || ||| ||||||| ||||||||| ||||||||||||||    
T  12585382 gatttatttggctaacatatactaacttaagggaccaaattgtaatgttaataacttatgagatcaaaatgtaaccaacaaataacttaagggaccaaat 12585481  T
Q  254 cattaattaag 264  Q
    |||||||||||    
T  12585482 cattaattaag 12585492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 25225861 - 25225793
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaa 263  Q
    ||||||||||||| ||||| |||||| || |||| ||||||||| ||||||||||||||||||||||||    
T  25225861 gtaacgttaataacttatgagaccaaaatataaccaacaaataacttaagggaccaaatcattaattaa 25225793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 17931359 - 17931288
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcc 266  Q
    ||||||||||||| ||||||||||||  |||||| || |||||| |||||||||||| ||||||||||||||    
T  17931359 gtaacgttaataacttatgggaccaaattgtaaccaataaataacttaagggaccaattcattaattaagcc 17931288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 190 - 265
Target Start/End: Original strand, 21325690 - 21325765
Alignment:
Q  190 aaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagc 265  Q
    |||||||||||||||||| | ||| ||| || ||||||| ||||||||||||||| || |||||||||||||||||    
T  21325690 aaaacgtaacgttaataactaatgtgactaaaatgtaaccaacaaataatttaagagatcaaatcattaattaagc 21325765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 49028334 - 49028267
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaatta 262  Q
    ||||||||||||||||||||||| || ||||||| ||||||||| ||||||||||| ||||| |||||    
T  49028334 gtaacgttaataatttatgggactaaaatgtaaccaacaaataacttaagggaccacatcatcaatta 49028267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 17932140 - 17932213
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagccaa 268  Q
    ||||| ||||||| ||||||||||||  |||||| || |||||| |||||||||||| ||||||||||||||||    
T  17932140 gtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggaccaattcattaattaagccaa 17932213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 272
Target Start/End: Complemental strand, 12315912 - 12315849
Alignment:
Q  209 ttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagccaaaaaa 272  Q
    ||||||||||||  ||||||  |||||||| |||| ||||||||||||||||||||||||||||    
T  12315912 ttatgggaccaaattgtaacctacaaataacttaaaggaccaaatcattaattaagccaaaaaa 12315849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 4439033 - 4439107
Alignment:
Q  190 aaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaag 264  Q
    |||||||||||||||||| ||||| ||||||  |||||| ||||||||| || ||||||||  ||||||||||||    
T  4439033 aaaacgtaacgttaataacttatgagaccaaattgtaaccaacaaataactttagggaccacgtcattaattaag 4439107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 36098815 - 36098747
Alignment:
Q  196 taacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaag 264  Q
    ||||||||||||||||||| || || || |||| ||||||||| ||||| ||||| |||||||||||||    
T  36098815 taacgttaataatttatggaactaaaatataaccaacaaataacttaagagaccacatcattaattaag 36098747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 12585242 - 12585158
Alignment:
Q  182 aagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcc 266  Q
    ||||||| |||  |||| |||||||| ||||| ||| || ||||||  ||||||||| |||||||||||  ||||||||||||||    
T  12585242 aagggatcaaattgtaatgttaataacttatgagactaaaatgtaatcaacaaataacttaagggaccacgtcattaattaagcc 12585158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 10468524 - 10468478
Alignment:
Q  222 atgtaactaacaaataatttaagggaccaaatcattaattaagccaa 268  Q
    ||||||| ||||||||| ||||||||||| |||| ||||||||||||    
T  10468524 atgtaaccaacaaataacttaagggaccacatcagtaattaagccaa 10468478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 264
Target Start/End: Original strand, 16067589 - 16067656
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaag 264  Q
    ||||||||||||| ||||| ||| || ||||||| |||||||||||||| ||||   |||||||||||||    
T  16067589 gtaacgttaataacttatgagactaaaatgtaaccaacaaataatttaaaggac--tatcattaattaag 16067656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 262
Target Start/End: Original strand, 52677818 - 52677884
Alignment:
Q  196 taacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaatta 262  Q
    |||| ||||||| ||||| ||| || ||||||| |||||||||  |||||||||| |||||||||||    
T  52677818 taacattaataacttatgagactaaaatgtaaccaacaaataacctaagggaccacatcattaatta 52677884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 45667369 - 45667409
Alignment:
Q  230 aacaaataatttaagggaccaaatcattaattaagccaaaa 270  Q
    ||||||||| |||| |||||| |||||||||||||||||||    
T  45667369 aacaaataacttaaaggaccacatcattaattaagccaaaa 45667409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 4e-67; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 3 - 266
Target Start/End: Original strand, 10536599 - 10536863
Alignment:
Q  3 gagtttggtgtt-aagggaggtgatggagttgtttaattttgtgatggagctgatgaatagagttgataatggtggtgaattttgtagaaattctggatt 101  Q
    ||||||| |||| ||||||||||||| |||| ||  |||||   |||||||| ||||||||||||||| | ||||||||||||| | |||||||||||||    
T  10536599 gagtttgatgttgaagggaggtgatgaagtttttagatttttcaatggagctaatgaatagagttgatgaaggtggtgaattttattgaaattctggatt 10536698  T
Q  102 ttaacaatgaaggggatgaagattaacagattttcacc-aatttaatggaaatgatttatttggctaacggattataagttaagggattaaaacgtaacg 200  Q
    | ||  ||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| || ||||||||| ||||  ||||||||||     
T  10536699 t-aatgatgaaagggatgaagattaacagattttcacccaatttaacggaaatgatttatttgactaacagactataagttaggggaccaaaacgtaaca 10536797  T
Q  201 ttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcc 266  Q
    ||||||| |||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  10536798 ttaataacttatgggatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaagcc 10536863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 119 - 265
Target Start/End: Original strand, 32539374 - 32539520
Alignment:
Q  119 gaagattaacagattttcaccaatttaatggaaatgatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggacc 218  Q
    ||||||||||||||||||||||||||||  || | ||||||||||||||||||||||||||||||||||  |||| |||| |||||||| ||||| ||      
T  32539374 gaagattaacagattttcaccaatttaagagataagatttatttggctaacggattataagttaagggacaaaaatgtaatgttaataacttatgagatt 32539473  T
Q  219 aatatgtaactaacaaataatttaagggaccaaatcattaattaagc 265  Q
    || ||||||| ||||||||| ||||||||||||||||||||||||||    
T  32539474 aaaatgtaaccaacaaataacttaagggaccaaatcattaattaagc 32539520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 32538497 - 32538325
Alignment:
Q  3 gagtttggtgtt-aagggaggtgatggagttgtttaattttgtgatggagctgatgaatagagttgataatggtggtgaattttgtagaaattctggatt 101  Q
    |||||||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||  |||||||| | ||||||||||||||| |||||||||||||    
T  32538497 gagtttggtgttgaagggaggcgatggagttttttaattttgtgatggaactgatgaa--gagttgatgaaggtggtgaattttgttgaaattctggatt 32538400  T
Q  102 ttaacaatgaaggggatgaagattaacagattttcaccaatttaatggaaatgatttatttggctaacggattataagttaagg 185  Q
    |||||         |||||||||||||| |||||||||||||||| |||||  |||||||||  |||  |||||||||||||||    
T  32538399 ttaac---------gatgaagattaacatattttcaccaatttaacggaaagaatttatttgattaatagattataagttaagg 32538325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 140 - 266
Target Start/End: Complemental strand, 10536126 - 10536000
Alignment:
Q  140 aatttaatggaaatgatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataat 239  Q
    ||||||| ||||| |||||||||| |||||  |||| |||||||||||  ||||||||| |||||||  |||||||||||| ||||||| |||||||||     
T  10536126 aatttaacggaaaggatttatttgactaacatattacaagttaagggaccaaaacgtaatgttaatatcttatgggaccaaaatgtaaccaacaaataac 10536027  T
Q  240 ttaagggaccaaatcattaattaagcc 266  Q
    ||||||||| |||||||||||||||||    
T  10536026 ttaagggactaaatcattaattaagcc 10536000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 195 - 275
Target Start/End: Original strand, 18203321 - 18203401
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagccaaaaaattt 275  Q
    ||||||||||||| |||||| ||||| || |||| || |||||| |||||||||||||||||||||||||| ||| |||||    
T  18203321 gtaacgttaataacttatggaaccaaaatataaccaataaataacttaagggaccaaatcattaattaagctaaataattt 18203401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 264
Target Start/End: Original strand, 30905991 - 30906060
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaag 264  Q
    ||||||||||||| ||||||||| || ||||||| ||||||||| ||||| ||||| |||||||||||||    
T  30905991 gtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagagaccacatcattaattaag 30906060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 195 - 265
Target Start/End: Complemental strand, 30905467 - 30905397
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagc 265  Q
    ||||||||||||| |||| | |  || || |||| ||||||||||||||||||||||||||||||||||||    
T  30905467 gtaacgttaataagttatagaattaaaatataaccaacaaataatttaagggaccaaatcattaattaagc 30905397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 9237724 - 9237816
Alignment:
Q  176 taagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagccaa 268  Q
    ||||||||||||  |||||| ||| || |  | ||| |||||||| | ||||| || |||||| |||||||||||||| | ||||||||||||    
T  9237724 taagttaagggaccaaaacgaaacttttaatagttaagggaccaaaacgtaaccaaaaaataagttaagggaccaaatgaataattaagccaa 9237816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 8e-56; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 75 - 272
Target Start/End: Original strand, 18471650 - 18471848
Alignment:
Q  75 tggtgaattttgtagaaattctggattttaacaatgaaggggatgaagattaacagattttcaccaa-tttaatggaaatgatttatttggctaacggat 173  Q
    ||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||| |||    
T  18471650 tggtgaattttgttgaaattctggattttaatgatgaaggggatgaagattaacagatttttacaaaatttaacggaaatgatttatttggctaacagat 18471749  T
Q  174 tataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagccaaaaaa 272  Q
    ||||||||||||||  ||||  ||| |||||||| ||||| |||||| ||||||| |||| |||| |||||||||||||||||||| |||||| |||||    
T  18471750 tataagttaagggaccaaaatataatgttaataacttatgagaccaaaatgtaaccaacagataacttaagggaccaaatcattaactaagcctaaaaa 18471848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 140 - 264
Target Start/End: Complemental strand, 8328321 - 8328197
Alignment:
Q  140 aatttaatggaaatgatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataat 239  Q
    ||||||| ||||| ||||||||||||||||  |||||||||||||||| ||||||||||||||||||| || || |||||| || ||||||| ||||||     
T  8328321 aatttaacggaaaggatttatttggctaacatattataagttaagggactaaaacgtaacgttaataacttgtgagaccaaaatctaactaataaataac 8328222  T
Q  240 ttaagggaccaaatcattaattaag 264  Q
    |||||||||| | ||||||||||||    
T  8328221 ttaagggaccgattcattaattaag 8328197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 140 - 266
Target Start/End: Complemental strand, 18470265 - 18470139
Alignment:
Q  140 aatttaatggaaatgatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataat 239  Q
    ||||||| ||||| |||||||||| ||||| |||||||||||||||||  ||||| |||| ||||||| ||||| | |||| ||||||| ||||||||||    
T  18470265 aatttaacggaaaggatttatttgactaacagattataagttaagggaccaaaacctaacattaataacttatgtggccaaaatgtaaccaacaaataat 18470166  T
Q  240 ttaagggaccaaatcattaattaagcc 266  Q
    |||||| || |||||||||||||||||    
T  18470165 ttaaggcacaaaatcattaattaagcc 18470139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 4265200 - 4265312
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    |||||||||||| ||| |||  ||| |||| |||  |||  ||||||||||||| |||||||| ||| |||||||  |||| ||| ||||||||||||||    
T  4265200 gatttatttggcaaacagatactaacttaatggaccaaattgtaacgttaataacttatgggatcaaaatgtaaccgacaactaacttaagggaccaaat 4265299  T
Q  254 cattaattaagcc 266  Q
    |||||||||||||    
T  4265300 cattaattaagcc 4265312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 8905711 - 8905639
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcca 267  Q
    ||||| ||||||| ||||| |||||| ||||||| ||||||||| ||||| |||||||||||| |||||||||    
T  8905711 gtaacattaataacttatgagaccaaaatgtaaccaacaaataacttaagagaccaaatcattgattaagcca 8905639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 190 - 265
Target Start/End: Original strand, 8329041 - 8329115
Alignment:
Q  190 aaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagc 265  Q
    |||||||||||||||||| || || |||||| ||||||| ||||||||| ||||  |||||| |||||||||||||    
T  8329041 aaaacgtaacgttaataacttttgagaccaaaatgtaaccaacaaataacttaa-agaccaattcattaattaagc 8329115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 8342595 - 8342655
Alignment:
Q  116 gatgaagattaacagattttcaccaa-tttaatggaaatgatttatttggctaacggatta 175  Q
    ||||||||||||||| |||| || || ||||| ||||||||||||||||||||| ||||||    
T  8342595 gatgaagattaacagttttttacaaaatttaacggaaatgatttatttggctaatggatta 8342655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 8594174 - 8594090
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataa 238  Q
    |||||| |||||||||  |||| |||||||||||  ||||||||| ||||| || |||||||||||| || |||  |||||||||    
T  8594174 gatttaattggctaacaaattacaagttaagggaccaaaacgtaatgttaagaacttatgggaccaaaatataatcaacaaataa 8594090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 25749396 - 25749466
Alignment:
Q  196 taacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcc 266  Q
    |||||||||||| ||||| ||| ||  |||||| ||||||||| |||||||| || || ||||||||||||    
T  25749396 taacgttaataacttatgagactaaattgtaaccaacaaataacttaagggaacacataattaattaagcc 25749466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 8341983 - 8341930
Alignment:
Q  116 gatgaagattaacagattttcaccaa-tttaatggaaatgatttatttggctaa 168  Q
    ||||||||||||||| |||| || || ||||| |||||||||||||||||||||    
T  8341983 gatgaagattaacagttttttacaaaatttaacggaaatgatttatttggctaa 8341930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 263
Target Start/End: Original strand, 8342658 - 8342731
Alignment:
Q  190 aaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaa 263  Q
    ||||||||| |||| ||| ||||| ||||||  |||||| || |||||| |||| ||||||| |||||||||||    
T  8342658 aaaacgtaatgttagtaacttatgagaccaaagtgtaaccaaaaaataacttaatggaccaattcattaattaa 8342731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 18471589 - 18471646
Alignment:
Q  3 gagtttggtgtt-aagggaggtgatggagttgtttaattttgtgatggagctgatgaa 59  Q
    |||||||||||| ||||||||||||| |||| ||  ||||||||||||||| ||||||    
T  18471589 gagtttggtgttgaagggaggtgatgaagtttttggattttgtgatggagccgatgaa 18471646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 7e-41; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 116 - 268
Target Start/End: Complemental strand, 4733455 - 4733302
Alignment:
Q  116 gatgaagattaacagattttcaccaa-tttaatggaaatgatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgg 214  Q
    ||||||||||||||| |||| || || |||||   ||| ||||||||||||||||||||||||| ||||||||  ||||||||| |||||||| ||||||    
T  4733455 gatgaagattaacagttttttacaaaatttaacataaaggatttatttggctaacggattataaattaagggaccaaaacgtaatgttaataacttatgg 4733356  T
Q  215 gaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagccaa 268  Q
    |||||| ||||||| |||||||||||||||||| ||||||||||||||||||||    
T  4733355 gaccaaaatgtaaccaacaaataatttaagggatcaaatcattaattaagccaa 4733302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 140 - 266
Target Start/End: Original strand, 4734162 - 4734288
Alignment:
Q  140 aatttaatggaaatgatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataat 239  Q
    ||||||| ||||| |||||||||||||||| |||||||||||||||||  |||||||||||||||||| |||| ||| ||| ||||||| |||||||||     
T  4734162 aatttaacggaaaggatttatttggctaacagattataagttaagggaccaaaacgtaacgttaataacttataggatcaaaatgtaaccaacaaataac 4734261  T
Q  240 ttaagggaccaaatcattaattaagcc 266  Q
    |||||||||||| ||||||||||||||    
T  4734262 ttaagggaccaattcattaattaagcc 4734288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 14159318 - 14159206
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    |||||||||||||||| || ||| ||||||||||  |||||||||||||||||| |||||||||||| | ||||| ||||||||| ||||||||||||||    
T  14159318 gatttatttggctaacagagtatgagttaagggaccaaaacgtaacgttaataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaaat 14159219  T
Q  254 cattaattaagcc 266  Q
    |||||||||||||    
T  14159218 cattaattaagcc 14159206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 14160380 - 14160492
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    |||||| ||||||||| || ||| ||| ||||||  |||||||||||||||||| |||||||||||| | ||||| ||||||||| |||| |||||||||    
T  14160380 gatttacttggctaacagagtatgagtcaagggaccaaaacgtaacgttaataacttatgggaccaaaacgtaaccaacaaataacttaatggaccaaat 14160479  T
Q  254 cattaattaagcc 266  Q
    |||||||||||||    
T  14160480 cattaattaagcc 14160492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 38695112 - 38695224
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    ||||||||||||||||  ||  ||| ||||||||  |||  |||||||||||||||||||||||||| ||||||| || |||||| ||||||||||||||    
T  38695112 gatttatttggctaacaaatactaacttaagggaccaaattgtaacgttaataatttatgggaccaaaatgtaaccaataaataacttaagggaccaaat 38695211  T
Q  254 cattaattaagcc 266  Q
    |||||||||||||    
T  38695212 cattaattaagcc 38695224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 152 - 266
Target Start/End: Original strand, 4410597 - 4410711
Alignment:
Q  152 atgatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaa 251  Q
    |||||||||||||||||| || | ||| ||||||||  |||| ||| ||||||||| ||| ||||||||  |||||| ||||||||| ||||||||||||    
T  4410597 atgatttatttggctaacagagtctaacttaagggaccaaaatgtagcgttaataacttacgggaccaaattgtaaccaacaaataacttaagggaccaa 4410696  T
Q  252 atcattaattaagcc 266  Q
    |||||||||||||||    
T  4410697 atcattaattaagcc 4410711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 154 - 262
Target Start/End: Complemental strand, 4409272 - 4409164
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    |||||| |||||||||  | | ||| ||||||||  |||||||||||||||||| ||||| ||||||  |||||||||||||||||||||| ||||||||    
T  4409272 gatttacttggctaacataatttaacttaagggaccaaaacgtaacgttaataacttatgagaccaaattgtaactaacaaataatttaagagaccaaat 4409173  T
Q  254 cattaatta 262  Q
    |||||||||    
T  4409172 cattaatta 4409164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 18166704 - 18166631
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagccaa 268  Q
    ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  18166704 gtaacgttaataacttatgagatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaagccaa 18166631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 201 - 272
Target Start/End: Original strand, 18171351 - 18171422
Alignment:
Q  201 ttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagccaaaaaa 272  Q
    ||||||| ||||||||| || ||||||| ||||||||||||||||||||| ||||||||||||||| |||||    
T  18171351 ttaataacttatgggactaaaatgtaaccaacaaataatttaagggaccatatcattaattaagcctaaaaa 18171422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 38694959 - 38694892
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaatta 262  Q
    ||||||||||||||||||||||| || ||||||| ||||||||| ||||||||||| ||||| |||||    
T  38694959 gtaacgttaataatttatgggactaaaatgtaaccaacaaataacttaagggaccacatcatcaatta 38694892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 42963033 - 42963104
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcc 266  Q
    ||||||||||||| ||||| ||| || ||||||| ||||||||| ||||||||||| |||||||||||||||    
T  42963033 gtaacgttaataacttatgagactaaaatgtaaccaacaaataacttaagggaccacatcattaattaagcc 42963104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 154 - 272
Target Start/End: Complemental strand, 42962880 - 42962762
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    ||||||||||||||||  ||  ||| ||||||||  |||  ||||||||| | | ||||| || ||| ||| ||| |||||||||  |||||||||||||    
T  42962880 gatttatttggctaacatatactaacttaagggaccaaattgtaacgttagtcacttatgagatcaaaatgcaaccaacaaataacctaagggaccaaat 42962781  T
Q  254 cattaattaagccaaaaaa 272  Q
    ||||||||||||| |||||    
T  42962780 cattaattaagcctaaaaa 42962762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 140 - 272
Target Start/End: Complemental strand, 9380056 - 9379924
Alignment:
Q  140 aatttaatggaaatgatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataat 239  Q
    ||||||| ||||| ||||||||||||||||  ||||||||||||||||  |||||||||||||||||| || ||| ||||| ||||||| |||||||||     
T  9380056 aatttaacggaaaggatttatttggctaacatattataagttaagggaccaaaacgtaacgttaataacttgtggaaccaaaatgtaaccaacaaataac 9379957  T
Q  240 ttaagggaccaaatcattaattaagccaaaaaa 272  Q
    |||||||||||| |||||||||||||| |||||    
T  9379956 ttaagggaccaattcattaattaagcctaaaaa 9379924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 116 - 265
Target Start/End: Original strand, 9380638 - 9380788
Alignment:
Q  116 gatgaagattaacagattttcaccaa-tttaatggaaatgatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgg 214  Q
    ||||||||||||||| |||| || || ||||| || || |||||||||| |||||  ||||||||| ||||||  |||||||||| ||||||| ||||||    
T  9380638 gatgaagattaacagttttttacaaaatttaacgggaaggatttatttgactaacatattataagtgaagggaccaaaacgtaacattaataacttatgg 9380737  T
Q  215 gaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagc 265  Q
    || ||| ||||||| ||||||||| |||||||| ||| |||||||||||||    
T  9380738 gatcaaaatgtaaccaacaaataacttaagggatcaattcattaattaagc 9380788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 1501055 - 1501164
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    |||||||||| |||||||| ||||| ||||||||  |||| |||||||||||||||||||||||||| ||| ||| || |||||| |||||||| |||||    
T  1501055 gatttatttgactaacggaatataacttaagggaccaaaatgtaacgttaataatttatgggaccaaaatgaaaccaataaataacttaagggatcaaat 1501154  T
Q  254 cattaattaa 263  Q
     |||||||||    
T  1501155 gattaattaa 1501164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 195 - 272
Target Start/End: Original strand, 5841142 - 5841219
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagccaaaaaa 272  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||||||||||| |||||    
T  5841142 gtaacgttaataatttatgggaccaaaatgtaaccaacaaataagttaagagaccaaatcattaattaagcctaaaaa 5841219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 195 - 272
Target Start/End: Complemental strand, 43183301 - 43183224
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagccaaaaaa 272  Q
    |||| ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||||||||||||||||    
T  43183301 gtaatgttaataatttatgggaccaaaatgtaaccaacaaataacttaagggaccaaattattaattaagccaaaaaa 43183224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 23322322 - 23322434
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    ||||||||||||||||  ||  ||| ||||||||  |||  ||||||||||||| |||||| ||||| ||||||| ||||||||| ||||||||||||||    
T  23322322 gatttatttggctaacatatactaacttaagggaccaaattgtaacgttaataacttatggaaccaaaatgtaaccaacaaataacttaagggaccaaat 23322421  T
Q  254 cattaattaagcc 266  Q
    |||||||||||||    
T  23322422 cattaattaagcc 23322434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 34634180 - 34634068
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    |||||||||| ||||| || | ||| |||| |||  |||| ||||||||||||| ||||||||||||  |||||| ||||||||| |||| |||||| ||    
T  34634180 gatttatttgactaacagagtctaacttaatggaccaaaatgtaacgttaataacttatgggaccaaattgtaaccaacaaataacttaaaggaccacat 34634081  T
Q  254 cattaattaagcc 266  Q
    |||||||||||||    
T  34634080 cattaattaagcc 34634068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 200 - 267
Target Start/End: Original strand, 20244521 - 20244588
Alignment:
Q  200 gttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcca 267  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||  || ||||||||||||||||||    
T  20244521 gttaataatttatgggaccaaaatgtaaccaacaaataatttaagtaacaaaatcattaattaagcca 20244588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 42793019 - 42792948
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcc 266  Q
    ||||| |||||||||||||||||||| ||| ||| ||||||||| ||||| |||||||||||||||||||||    
T  42793019 gtaacattaataatttatgggaccaaaatgaaaccaacaaataacttaagcgaccaaatcattaattaagcc 42792948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 25088516 - 25088419
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaa 251  Q
    |||||||||||||||| |||  |||  |||||||  |||  ||||||||||||||||||| |||||| ||||||| ||||||||| ||| ||||||||    
T  25088516 gatttatttggctaacagatactaacataagggaccaaattgtaacgttaataatttatgcgaccaaaatgtaaccaacaaataacttacgggaccaa 25088419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 25146485 - 25146388
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaa 251  Q
    |||||||||||||||| |||  |||  |||||||  |||  ||||||||||||||||||| |||||| ||||||| ||||||||| ||| ||||||||    
T  25146485 gatttatttggctaacagatactaacataagggaccaaattgtaacgttaataatttatgcgaccaaaatgtaaccaacaaataacttacgggaccaa 25146388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 5840961 - 5840880
Alignment:
Q  182 aagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaa 263  Q
    ||||||| |||  ||||||||||||| |||||| || || || |||| ||||||||| ||||||||||| ||||||||||||    
T  5840961 aagggatcaaattgtaacgttaataacttatggcactaaaatataaccaacaaataacttaagggaccacatcattaattaa 5840880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 15933440 - 15933356
Alignment:
Q  182 aagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcc 266  Q
    |||||| ||||  ||||||||||||| ||||| ||| || || |||| |||||||||| |||||||||| |||||| ||||||||    
T  15933440 aagggactaaattgtaacgttaataacttatgagactaaaatataaccaacaaataatataagggaccacatcattgattaagcc 15933356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 15933610 - 15933663
Alignment:
Q  213 gggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcc 266  Q
    ||||| || ||||||| ||||||||| ||||||||||||||||| |||||||||    
T  15933610 gggactaaaatgtaaccaacaaataacttaagggaccaaatcatgaattaagcc 15933663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 23322169 - 23322093
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagccaaaaa 271  Q
    ||||| ||||||| ||||||||| || ||||||| ||||||||| ||||  ||| | ||||||||||||||| ||||    
T  23322169 gtaacattaataacttatgggactaaaatgtaaccaacaaataacttaatagactacatcattaattaagcctaaaa 23322093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 8359509 - 8359541
Alignment:
Q  240 ttaagggaccaaatcattaattaagccaaaaaa 272  Q
    |||||||||||||| ||||||||||||||||||    
T  8359509 ttaagggaccaaatgattaattaagccaaaaaa 8359541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 148 - 266
Target Start/End: Complemental strand, 16908048 - 16907930
Alignment:
Q  148 ggaaatgatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaaggga 247  Q
    |||||| ||||||||||||||| || ||| ||||||||||  ||||| |||||||||||| |||||||||||| | ||||| ||||||||| ||||||||    
T  16908048 ggaaataatttatttggctaacagagtatgagttaagggaccaaaacataacgttaataacttatgggaccaaaacgtaaccaacaaataacttaaggga 16907949  T
Q  248 ccaaatcattaattaagcc 266  Q
    |||||||||||||||||||    
T  16907948 ccaaatcattaattaagcc 16907930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 46684210 - 46684098
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    ||||||||||||| |||||  |||| ||||||||  ||||||||| |||||||| |||||||| ||| ||||||| ||||||||| ||||| ||||||||    
T  46684210 gatttatttggctgacggaagataacttaagggaccaaaacgtaatgttaataacttatgggatcaaaatgtaaccaacaaataacttaagcgaccaaat 46684111  T
Q  254 cattaattaagcc 266  Q
    |||||||||||||    
T  46684110 cattaattaagcc 46684098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 46685489 - 46685601
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    ||||||||||| | |||||  |||| |||||||| || ||||||| | |||||| |||||||||||| ||||||| || |||||||||||||||||||||    
T  46685489 gatttatttggttgacggaagataacttaagggactataacgtaatgataataacttatgggaccaaaatgtaaccaataaataatttaagggaccaaat 46685588  T
Q  254 cattaattaagcc 266  Q
    |||||||||||||    
T  46685589 cattaattaagcc 46685601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 27864911 - 27864799
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    ||||||||||||||||  ||  ||| ||||||||  |||  ||||||||||||| |||||||||||| ||||||| ||||||||| ||| ||||||||||    
T  27864911 gatttatttggctaacaaatactaacttaagggaccaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaaataacttacgggaccaaat 27864812  T
Q  254 cattaattaagcc 266  Q
    |||||||||||||    
T  27864811 cattaattaagcc 27864799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 31596752 - 31596823
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcc 266  Q
    ||||||||||||| |||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||    
T  31596752 gtaacgttaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 31596823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 38758873 - 38758951
Alignment:
Q  196 taacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagccaaaaaatt 274  Q
    ||||||| |||| |||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| |||||    
T  38758873 taacgttgataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagccaataaatt 38758951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 24107263 - 24107151
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    |||||||||||||||| ||   ||| ||||| ||  |||  ||||||||||||| |||||||||||| ||||||| ||||||||| | ||||||||||||    
T  24107263 gatttatttggctaacagaaactaacttaagtgaccaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaaataactcaagggaccaaat 24107164  T
Q  254 cattaattaagcc 266  Q
    |||||||||||||    
T  24107163 cattaattaagcc 24107151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 27865063 - 27865134
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcc 266  Q
    ||||||||||||| ||||||||| || ||||||| ||||||||| ||||||||||| |||||||||||||||    
T  27865063 gtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaagcc 27865134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 3171560 - 3171489
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcc 266  Q
    ||||| ||||||| ||||||||| || ||||||| ||||||||| ||||||||||| |||||||||||||||    
T  3171560 gtaacattaataacttatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaagcc 3171489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 18025937 - 18025878
Alignment:
Q  209 ttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagccaa 268  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||||||    
T  18025937 ttatgggaccaaaatgtaaccaacaaataacttaagggaccaaagcattaattaagccaa 18025878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 54446280 - 54446349
Alignment:
Q  195 gtaacgttaataatttatgggaccaata-tgtaactaacaaataatttaagggaccaaatcattaattaa 263  Q
    |||| |||||||| |||| ||||||| | |||||||||||||||| ||||||||||||||||||||||||    
T  54446280 gtaatgttaataacttataggaccaaaaatgtaactaacaaataacttaagggaccaaatcattaattaa 54446349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 38758692 - 38758608
Alignment:
Q  182 aagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcc 266  Q
    |||||| ||||  ||||||||||||| ||||||||| || ||||||| ||||||||| ||||||||| | |||| ||||||||||    
T  38758692 aagggactaaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagggacaacatcactaattaagcc 38758608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 11422428 - 11422377
Alignment:
Q  217 ccaatatgtaactaacaaataatttaagggaccaaatcattaattaagccaa 268  Q
    |||| ||||||| ||||||||| |||||||||||||||||||||||||||||    
T  11422428 ccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagccaa 11422377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 14812498 - 14812427
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcc 266  Q
    ||||||||||||| |||||||||||| |||||||||| |||||| ||||  || ||||||||| ||||||||    
T  14812498 gtaacgttaataacttatgggaccaaaatgtaactaaaaaataacttaaatgatcaaatcattgattaagcc 14812427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 24107416 - 24107487
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcc 266  Q
    ||||||||||||| ||||||||| || ||||||| ||||| ||| |||| |||||| |||||||||||||||    
T  24107416 gtaacgttaataacttatgggactaaaatgtaaccaacaattaacttaatggaccacatcattaattaagcc 24107487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 19860562 - 19860486
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagccaaaaa 271  Q
    ||||||||||||| ||||||||| || ||||||| || |||||| ||||  ||||| ||||||||||||||| ||||    
T  19860562 gtaacgttaataacttatgggactaaaatgtaaccaataaataacttaatagaccacatcattaattaagcctaaaa 19860486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 24360697 - 24360751
Alignment:
Q  144 taatggaaatgatttatttggctaacggattataagttaagggattaaaacgtaa 198  Q
    |||| ||||||||||||||||||||| || | ||||||||||||| |||||||||    
T  24360697 taatagaaatgatttatttggctaactgagtgtaagttaagggatcaaaacgtaa 24360751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 3171778 - 3171822
Alignment:
Q  222 atgtaactaacaaataatttaagggaccaaatcattaattaagcc 266  Q
    |||||||  |||||||| |||||||||||||||||||||||||||    
T  3171778 atgtaaccgacaaataacttaagggaccaaatcattaattaagcc 3171822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 21792288 - 21792228
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatca 255  Q
    ||||||||||||| ||||||||| || ||||||| ||| ||||| ||||||||||| ||||    
T  21792288 gtaacgttaataacttatgggactaaaatgtaaccaaccaataaattaagggaccacatca 21792228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 24360464 - 24360526
Alignment:
Q  143 ttaatggaaatgatttatttggctaacggattataagttaagggattaaaacgtaacgttaat 205  Q
    ||||| ||||||||||||||||| || | ||| |||||||| |||| |||| |||||||||||    
T  24360464 ttaatagaaatgatttatttggcaaatgaattgtaagttaaaggatcaaaatgtaacgttaat 24360526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 24361113 - 24361175
Alignment:
Q  143 ttaatggaaatgatttatttggctaacggattataagttaagggattaaaacgtaacgttaat 205  Q
    ||||| |||||||||||||| | ||||||| |  |||||||| ||| ||||||||||||||||    
T  24361113 ttaatagaaatgatttatttagttaacggagtgcaagttaagagatcaaaacgtaacgttaat 24361175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 27452166 - 27452219
Alignment:
Q  152 atgatttatttggctaacggattataagttaagggattaaaacgtaacgttaat 205  Q
    ||||||||||||||||||    |||||||||| ||| |||||||||||||||||    
T  27452166 atgatttatttggctaacaaggtataagttaaaggactaaaacgtaacgttaat 27452219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 18026103 - 18026159
Alignment:
Q  182 aagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataa 238  Q
    |||||| ||||  ||||||||||||| ||||||||| || ||||||| |||||||||    
T  18026103 aagggactaaatggtaacgttaataacttatgggactaaaatgtaaccaacaaataa 18026159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 273
Target Start/End: Complemental strand, 30385234 - 30385174
Alignment:
Q  213 gggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagccaaaaaat 273  Q
    |||||||| ||| ||| || |||||| |||||||||||||| | |||||||||| ||||||    
T  30385234 gggaccaaaatgaaaccaaaaaataagttaagggaccaaatgagtaattaagcctaaaaat 30385174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 154 - 265
Target Start/End: Complemental strand, 93743 - 93633
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    ||||||||||||||||  ||  ||| |||||||| ||||  |||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||    
T  93743 gatttatttggctaacaaatagtaacttaagggactaaattgtaacgttaataatttatgggaccaaaatgtaactaacaaataacttaa-ggatcaaat 93645  T
Q  254 cattaattaagc 265  Q
    ||||||||||||    
T  93644 cattaattaagc 93633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 93896 - 93944
Alignment:
Q  195 gtaacgttaataatttatgggaccaatatgtaactaacaaataatttaa 243  Q
    ||||||||||||||||||||||| || ||||||| ||||||||| ||||    
T  93896 gtaacgttaataatttatgggactaaaatgtaaccaacaaataaattaa 93944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 20007 - 19897
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    |||||||||||||||| |||  ||| ||||||||  |||  ||||||||||||| ||||| |||||| ||||||| ||||||||| ||||||||||||||    
T  20007 gatttatttggctaacagatactaacttaagggaccaaattgtaacgttaataacttatgcgaccaaaatgtaaccaacaaataacttaagggaccaaat 19908  T
Q  254 cattaattaag 264  Q
    |||||||||||    
T  19907 cattaattaag 19897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 3659176 - 3659287
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    ||||||||||||||||  ||  ||| ||||||||  |||  |||| |||||||| |||||||||||| ||||||||||||||||| ||||||||||||||    
T  3659176 gatttatttggctaacaaatactaacttaagggaccaaattgtaa-gttaataacttatgggaccaaaatgtaactaacaaataacttaagggaccaaat 3659274  T
Q  254 cattaattaagcc 266  Q
    |||||||||||||    
T  3659275 cattaattaagcc 3659287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 5367639 - 5367750
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    ||||||||||||||||  ||  ||| ||||||||  |||  ||||||||||||| |||||| ||||| ||||||| ||||||||| |||| |||||||||    
T  5367639 gatttatttggctaacaaatactaacttaagggaccaaattgtaacgttaataacttatggaaccaaaatgtaaccaacaaataacttaa-ggaccaaat 5367737  T
Q  254 cattaattaagcc 266  Q
    |||||||||||||    
T  5367738 cattaattaagcc 5367750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 8286900 - 8286788
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    ||||||||||| | || ||  |||| |||||| | ||||| ||||||||||| | ||| |||||||| ||||||| ||||||||| ||||||||| ||||    
T  8286900 gatttatttggttgacagaagataacttaaggaactaaaatgtaacgttaattacttaagggaccaaaatgtaaccaacaaataacttaagggactaaat 8286801  T
Q  254 cattaattaagcc 266  Q
    |||||||||||||    
T  8286800 cattaattaagcc 8286788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 3720163 - 3720052
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaa-ctaacaaataatttaagggaccaaa 252  Q
    |||||| |||||||||| |||| |||||||||||  || |||||| | |||||| |||||||||||| ||||||   || |||||| |||||||||||||    
T  3720163 gatttaattggctaacgaattaaaagttaagggaccaacacgtaatgctaataaattatgggaccaaaatgtaataaaaaaaataacttaagggaccaaa 3720064  T
Q  253 tcattaattaag 264  Q
    ||||||||||||    
T  3720063 tcattaattaag 3720052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 154 - 266
Target Start/End: Original strand, 8287389 - 8287501
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    ||||||||||| | |||||  |||| ||||||||  |||| |||||||| |  | |||  |||| || ||||||| ||||||||| ||||||||||||||    
T  8287389 gatttatttggttgacggaagataacttaagggaccaaaatgtaacgttgaatagttaaaggactaaaatgtaaccaacaaataacttaagggaccaaat 8287488  T
Q  254 cattaattaagcc 266  Q
    |||||||||||||    
T  8287489 cattaattaagcc 8287501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 13119207 - 13119245
Alignment:
Q  234 aataatttaagggaccaaatcattaattaagccaaaaaa 272  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  13119207 aataacttaagggaccaaatcattaattaagccaaaaaa 13119245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 5367451 - 5367402
Alignment:
Q  222 atgtaactaacaaataatttaagggaccaaatcattaattaagccaaaaa 271  Q
    ||||||| ||||||||| ||||||||||| |||| |||||||||||||||    
T  5367451 atgtaaccaacaaataacttaagggaccatatcagtaattaagccaaaaa 5367402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 3659036 - 3658952
Alignment:
Q  182 aagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaatcattaattaagcc 266  Q
    ||||||| |||  ||||| ||||||| ||||||||| ||  |||||| || |||||| ||||||||||| |||| ||||||||||    
T  3659036 aagggatcaaattgtaactttaataacttatgggactaaactgtaaccaataaataacttaagggaccacatcagtaattaagcc 3658952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 266844 - 266953
Alignment:
Q  154 gatttatttggctaacggattataagttaagggattaaaacgtaacgttaataatttatgggaccaatatgtaactaacaaataatttaagggaccaaat 253  Q
    |||||||||||||||| |||  ||| ||||||||  |||   ||| |||||||| ||||| |||||| ||||||| ||||||||| |||| |||||||||    
T  266844 gatttatttggctaacagatactaacttaagggaccaaattataaggttaataacttatgtgaccaaaatgtaaccaacaaataacttaaaggaccaaat 266943  T
Q  254 cattaattaa 263  Q
    ||||||||||    
T  266944 cattaattaa 266953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University