View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7178_high_14 (Length: 258)
Name: NF7178_high_14
Description: NF7178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7178_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 36606230 - 36605978
Alignment:
| Q |
1 |
ctcagtaatgtatgatagttttcttataaatcaaacaactacatctgatgccgttgagtttgatgttccgtctgccaaagtcacacaagaaatcaaaaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36606230 |
ctcagtaatgtatgatagttttcttataaatcaaacaactacatctgatgtcgttgagtgtgatgttccgtctgccaaagtcacacaagaaatcaaaaac |
36606131 |
T |
|
| Q |
101 |
cttcaagatatttgtaaggaaatggcttcgatcaattctctcaaacattcactttccatttctggaaaaaagtctgtttgtgaagttagtccagcaagct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36606130 |
cttcaagatatttgtaaggaaatggcttcaatcaattctctcaaacattcactttccatttctggaaaaaagtctgtttgtgaagttagtccagtaagct |
36606031 |
T |
|
| Q |
201 |
tgccaactaataggcctcataaagttagccagccaaagctgatgtccatctca |
253 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
36606030 |
tgccaaataataggcctcataaagttagccagccaaagcttatgtacatctca |
36605978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University