View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7178_high_16 (Length: 255)
Name: NF7178_high_16
Description: NF7178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7178_high_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 9346550 - 9346794
Alignment:
| Q |
1 |
aaaaatggaagggtggaattcgatcttctagagagagggaggagaaaattctgcccttaagagtttctagtgagagaaacaacatgaaaaatgaatgttt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9346550 |
aaaaatggaagggtggaattcgaccttctagagagagggaggagaaaattctgcccttaagagtttctagtgagagaaacaacatgaaaaatgaatgttt |
9346649 |
T |
|
| Q |
101 |
cttgctccaacatacttatatactctttgcttgcaattactaaaatgcccttttccttaaacgtgtctattatgtcgctgataattaaatccgtgtttaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
9346650 |
cttgctccaacatacttatatactctttgcttgcaattactaaaatgccctttgccttaaacgtgtctattctgtcgctgataattaaatccgtgcttaa |
9346749 |
T |
|
| Q |
201 |
ctgactatacgtgataaaacattctctagcatacttgatgtccat |
245 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9346750 |
ctgactttacgtgataaaacattctctagcatacttgatttccat |
9346794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 6420944 - 6420859
Alignment:
| Q |
11 |
gggtggaattcgatcttctagagagagggaggagaaaattctgcccttaagag-tttctagtgagagaaaca-acatgaaaaatgaa |
95 |
Q |
| |
|
||||||||| ||| |||||||||||||| ||||||||||| || || |||||| ||| ||| |||||||||| ||| |||||||||| |
|
|
| T |
6420944 |
gggtggaatacgaccttctagagagaggaaggagaaaattatgtcc-taagagttttttagagagagaaacatacaagaaaaatgaa |
6420859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 23296107 - 23296342
Alignment:
| Q |
4 |
aatggaagggtggaattcgatcttctagagagagggaggagaaaattctgcccttaagagtttctagtgagagaaacaacatgaaaaatgaatgtttctt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23296107 |
aatggaagggtggaattcgatcttctagagagagggaggagaaaattctgcccttaagagtttctagtgagagaaacaacatgaaaaatgaatgtttctt |
23296206 |
T |
|
| Q |
104 |
gctccaacatacttatatactctttgcttgcaattactaaaatgcccttttccttaaacgtgtctattatgtcgctgataattaaatccgtgtttaactg |
203 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||| |||||||||||||||||||| || ||||| |
|
|
| T |
23296207 |
gctccaacatacttatatactccttgcttgcaattactaaaatatcctttgccttaaacgtgtttatcctgtcgctgataattaaatccatgcttaacca |
23296306 |
T |
|
| Q |
204 |
actatacgtgataaaacattctctagcatacttgat |
239 |
Q |
| |
|
| | ||| ||||||||||||||| |||||||||| |
|
|
| T |
23296307 |
aatttacctgataaaacattctccgtcatacttgat |
23296342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 29790089 - 29790030
Alignment:
| Q |
7 |
ggaagggtggaattcgatcttctagagagagggaggagaaaattctgcccttaagagttt |
66 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| |||||||||| ||| ||||||||||| |
|
|
| T |
29790089 |
ggaagggtgaaattcgaccttctagagagaggggggagaaaattttgctcttaagagttt |
29790030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University