View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7178_high_18 (Length: 245)
Name: NF7178_high_18
Description: NF7178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7178_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 36606338 - 36606574
Alignment:
| Q |
1 |
actgttggcacgtgatcccacaatttcagtgtgattaaaactcccatgttcagggggtgttggttcactcaagtcaataaaagtgtttgcgaagtcaaaa |
100 |
Q |
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| T |
36606338 |
actgttggcacgtgatcccacaatttcagtgtgattaaaactcccatgttcagggggtgttggttcactcaagtcaataaaagtgtttgcaaagtcaaaa |
36606437 |
T |
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| Q |
101 |
agttcaaatccttgaatggagactgaagatgaaacagaattgttgctggttgcttgcattcctttggtactactttcaaaagccttcaaaggctctctag |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36606438 |
agttcaaatccttgaatagagactgaagatgaaacaga---gttgctggttgcttgcattcctttggtactactttcaaaagccttcaaaggctctttag |
36606534 |
T |
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| Q |
201 |
aaacatgtggcagatga---ttaggtaaccgatgatgtcc |
237 |
Q |
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| T |
36606535 |
aaacatgtggcagatgaccgttaggcaaccgatgatgtcc |
36606574 |
T |
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