View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7178_high_5 (Length: 398)
Name: NF7178_high_5
Description: NF7178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7178_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 32494217 - 32494607
Alignment:
| Q |
1 |
acatggttcatacaatttcatggaggatcatcattcaatcttaggctaatagttttaactattcatggtaattgaacatccttcattcaatccaatacct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
32494217 |
acatggttcatacaatttcatggaggatcatcattcaatcttaggctaatagttttaactattcatggtaattgaacatccatcattcaatccaattcct |
32494316 |
T |
|
| Q |
101 |
cttaggtagacccttcctcactacaacaagagcagt----------------------catagaccacaagaatggaaggctcgcctttagtgtggacaa |
178 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32494317 |
cttaggtagacccttcctcactacaacaagagcagtcatagaccacaagaatggaagtcatagaccacaagaatggaaggctcgcctttaatgtggacaa |
32494416 |
T |
|
| Q |
179 |
tgaggtaatctaattcaacttaaagaatcttatgaaaggacctaccatgaaatactcatgtatgttagcctatacgcatctcggtggttgatttttcaac |
278 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
32494417 |
tgaggtaatgtaattcaacttaaagaatcttatgaaaggacctaccatgaaatactcatgtatgttagcctatacgcatctcagtggttgatttctcaac |
32494516 |
T |
|
| Q |
279 |
aactgttgtgaatccacctttaatctccttgttgtagatttgctctacannnnnnnctctgtttttatgtgtctgggaagtgtaatctccc |
369 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
32494517 |
aactgctgtgaatccacctttaatctccttgttgtagacttgctctacatttttttctctgtttttatgtttctgggaagtgtaatctccc |
32494607 |
T |
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