View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7178_high_7 (Length: 381)
Name: NF7178_high_7
Description: NF7178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7178_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 42422305 - 42422669
Alignment:
| Q |
1 |
aaaatttatgtcattttttgtattttctgctataggtgtagtgtccatttcccaaagggcttccaccaatggtgtttcatccaaccatatactattaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42422305 |
aaaatttatgtcattttttgtattttctgctataggtgtagtgtccatttcccaaagggcttccaccaatggtgtttcatccaaccatatactattcatt |
42422404 |
T |
|
| Q |
101 |
agagaatcgtcactgcaaatgctatctagcaaaagtgattcttctccagaagaattttcagctggggatgagcttgaattctcctctgaattgacaaccc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42422405 |
agagaatcgtcactgcaaatgctatctagcaaaagtgattcttctccagaagaattttcagctggggatgagcttgaattctcctctgaattgacaaccc |
42422504 |
T |
|
| Q |
201 |
catcagtttccttcacttcatggttgttgacaggctgtgacaaattttctgcaggggatgaagtactactatcattggatgatgcttgtttattcaaagg |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42422505 |
catcagtttccttcacttcatgattgttgacaggctgtgaaaaattttctgcaggggatgaagtactactatcattggatgatgcttgtttattcaaagg |
42422604 |
T |
|
| Q |
301 |
ttcatgagtaatgggatcaattcccatcttaatgagctttttcttgatgtgtgtgttccaatgat |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42422605 |
ttcatgagtaatgggatcaattcccatcttaatgagctttttcttgatgtgtgtgttccaatgat |
42422669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 42415527 - 42415637
Alignment:
| Q |
59 |
gcttccaccaatggtgttt-catccaaccatatactattaattagagaatc--gtcactgcaaatgctatctagcaaaagtgattcttctccagaagaat |
155 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||| ||| | |||||||| | || |||||||||||||||||||||||| | ||||||||| |||||| |
|
|
| T |
42415527 |
gcttctaccaatgatgttttcatccaaccataggctactcattagagagacctgtgactgcaaatgctatctagcaaaagggtatcttctccaaaagaat |
42415626 |
T |
|
| Q |
156 |
tttcagctggg |
166 |
Q |
| |
|
||| ||||||| |
|
|
| T |
42415627 |
tttaagctggg |
42415637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University