View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7178_low_10 (Length: 375)
Name: NF7178_low_10
Description: NF7178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7178_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 24138521 - 24138164
Alignment:
| Q |
1 |
aagagcatgtggcatgatttcctgataaaccatgnnnnnnncttctgtagttgctgtttcaagcttttgttgaataaatcggcttccatattgatcggca |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24138521 |
aagagcatgtggcatgatttcctgataaaccatgtttttttcttctgtagttgctgtttcaagcttttgttgaataaatcggcttccatattgatcggca |
24138422 |
T |
|
| Q |
101 |
ctgccaacgattgtaaattaagtcaatttaacttttaagacgacnnnnnnnnnnt-gcatcaacagacaaaaattgaacaaatttacctgaattcaacaa |
199 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24138421 |
ctgccaacgatcgtaaattaagtcaagttaacttttaagacgacaaaaaaaaaaaagcatcaaccgacaaaaattgaacaaatttacctgaattcaacaa |
24138322 |
T |
|
| Q |
200 |
catgtccggcaatttcagagagctcaaaacacttggctttattgcttttaaactcttccagcagagaagaagcaaagctttcatccatattcccggaatc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24138321 |
catgtccggcaatttcagagagctcaaaacacttggctttattgcttttaaactcttccagcagagaagaagcaaagctttcatccatattcccggaatc |
24138222 |
T |
|
| Q |
300 |
tacatgccaaggtcccatgaccccggctaagttcctcattccagaagcaaaacgcatg |
357 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24138221 |
tacatgccaaggtcccatgaccccggctaagttcctcattccagaagcaaaacgcatg |
24138164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 184 - 356
Target Start/End: Complemental strand, 41720657 - 41720485
Alignment:
| Q |
184 |
tacctgaattcaacaacatgtccggcaatttcagagagctcaaaacacttggctttattgcttttaaactcttccagcagagaagaagcaaagctttcat |
283 |
Q |
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|||||||||||||||||||| || | ||||||||| |||||||| ||||| | ||||||||||||||||||||||| |||||| ||||||||| |||||| |
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| T |
41720657 |
tacctgaattcaacaacatgaccagaaatttcagaaagctcaaagcactttgttttattgcttttaaactcttccaacagagacgaagcaaagttttcat |
41720558 |
T |
|
| Q |
284 |
ccatattcccggaatctacatgccaaggtcccatgaccccggctaagttcctcattccagaagcaaaacgcat |
356 |
Q |
| |
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| | || | | ||||| ||||| ||| |||||||||| |||| ||||||||||||||||||||| |||| |
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| T |
41720557 |
ctacgtttacagcatctaggtgccatggtgccatgaccccagctacattcctcattccagaagcaaaatgcat |
41720485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 41720859 - 41720753
Alignment:
| Q |
1 |
aagagcatgtggcatgatttcctgataaaccatgnnnnnnncttctgtagttgctgtttcaagcttttgttgaataaatcggcttccatattgatcggca |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| ||||| ||||||||||| ||| |
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| T |
41720859 |
aagagcatgtggcgtgatttcctgataaaccatattcttttcttcagtggttgctgtttcaagcttttgttgaataaaccggctaccatattgatcagca |
41720760 |
T |
|
| Q |
101 |
ctgccaa |
107 |
Q |
| |
|
||||||| |
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|
| T |
41720759 |
ctgccaa |
41720753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 34413804 - 34413703
Alignment:
| Q |
185 |
acctgaattcaacaacatgtccggcaatttcagagagctcaaaacacttggctttattgcttttaaactcttccagcagagaagaagcaaagctttcatc |
284 |
Q |
| |
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||||||| ||||||||||| || |||||||| || || |||||||| |||| |||||||||||| || || || |||| ||||||| |||| | ||||| |
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| T |
34413804 |
acctgaactcaacaacatgcccagcaatttctgaaagttcaaaacatttggttttattgcttttgaattcatcaagcaacgaagaaggaaagttctcatc |
34413705 |
T |
|
| Q |
285 |
ca |
286 |
Q |
| |
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|| |
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|
| T |
34413704 |
ca |
34413703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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