View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7178_low_13 (Length: 316)

Name: NF7178_low_13
Description: NF7178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7178_low_13
NF7178_low_13
[»] chr5 (13 HSPs)
chr5 (168-303)||(33699975-33700110)
chr5 (170-303)||(8317324-8317457)
chr5 (174-303)||(36193756-36193885)
chr5 (9-55)||(17037590-17037636)
chr5 (174-304)||(25561138-25561269)
chr5 (9-55)||(37233079-37233125)
chr5 (9-55)||(42076094-42076140)
chr5 (9-55)||(5079071-5079117)
chr5 (9-55)||(7410871-7410917)
chr5 (9-55)||(9333568-9333614)
chr5 (11-44)||(12042195-12042228)
chr5 (9-54)||(31068971-31069015)
chr5 (9-41)||(10869484-10869516)
[»] chr8 (10 HSPs)
chr8 (168-303)||(10335362-10335497)
chr8 (171-303)||(39823366-39823498)
chr8 (174-304)||(32826592-32826722)
chr8 (169-303)||(11796587-11796713)
chr8 (174-269)||(43899058-43899154)
chr8 (168-269)||(28321011-28321112)
chr8 (9-53)||(6403640-6403684)
chr8 (9-55)||(6801837-6801883)
chr8 (9-55)||(28249082-28249128)
chr8 (9-55)||(45356119-45356165)
[»] chr7 (7 HSPs)
chr7 (168-303)||(22609817-22609952)
chr7 (168-275)||(37961564-37961671)
chr7 (174-303)||(46205837-46205966)
chr7 (168-241)||(29772422-29772495)
chr7 (9-44)||(20277378-20277413)
chr7 (9-55)||(26608546-26608592)
chr7 (231-304)||(43202358-43202431)
[»] chr3 (15 HSPs)
chr3 (168-303)||(54383664-54383799)
chr3 (217-301)||(41410540-41410624)
chr3 (168-284)||(38360172-38360288)
chr3 (205-303)||(26813971-26814069)
chr3 (174-269)||(8913905-8914001)
chr3 (168-212)||(41409799-41409843)
chr3 (9-55)||(26707906-26707952)
chr3 (9-55)||(26735681-26735727)
chr3 (9-54)||(1627955-1628000)
chr3 (9-55)||(2943221-2943267)
chr3 (9-55)||(7407761-7407807)
chr3 (9-55)||(9633449-9633495)
chr3 (9-55)||(13846039-13846085)
chr3 (9-55)||(16457338-16457384)
chr3 (198-288)||(17071896-17071986)
[»] chr6 (11 HSPs)
chr6 (168-303)||(34576148-34576283)
chr6 (174-285)||(6266433-6266544)
chr6 (168-269)||(9961146-9961247)
chr6 (9-55)||(16734852-16734898)
chr6 (9-55)||(23264503-23264549)
chr6 (168-266)||(33029677-33029775)
chr6 (9-53)||(4485574-4485618)
chr6 (168-239)||(14113393-14113464)
chr6 (9-44)||(29667933-29667968)
chr6 (11-44)||(23904370-23904403)
chr6 (11-55)||(27969924-27969968)
[»] chr1 (14 HSPs)
chr1 (168-303)||(6797432-6797566)
chr1 (168-303)||(47030428-47030563)
chr1 (168-303)||(1141484-1141618)
chr1 (168-303)||(26028970-26029105)
chr1 (168-255)||(50797990-50798077)
chr1 (198-303)||(49775703-49775808)
chr1 (174-304)||(9245795-9245925)
chr1 (9-55)||(12189999-12190045)
chr1 (168-269)||(30057568-30057667)
chr1 (168-256)||(40428471-40428556)
chr1 (9-43)||(3399669-3399703)
chr1 (10-55)||(16222826-16222871)
chr1 (11-43)||(1844001-1844033)
chr1 (7-43)||(15204639-15204675)
[»] scaffold0063 (1 HSPs)
scaffold0063 (176-298)||(35769-35889)
[»] chr2 (9 HSPs)
chr2 (168-303)||(40611581-40611716)
chr2 (171-303)||(33425104-33425235)
chr2 (193-303)||(24441967-24442077)
chr2 (9-55)||(11017504-11017550)
chr2 (9-55)||(7718232-7718278)
chr2 (9-55)||(24479199-24479245)
chr2 (9-55)||(41573440-41573486)
chr2 (10-55)||(22966573-22966618)
chr2 (9-54)||(30267050-30267095)
[»] chr4 (13 HSPs)
chr4 (174-304)||(2933571-2933701)
chr4 (57-156)||(21317585-21317684)
chr4 (168-303)||(4641601-4641737)
chr4 (174-304)||(4734121-4734251)
chr4 (1-55)||(21317477-21317531)
chr4 (174-303)||(12842295-12842425)
chr4 (168-269)||(45283081-45283182)
chr4 (168-268)||(40262409-40262509)
chr4 (169-212)||(42989750-42989793)
chr4 (168-246)||(16182244-16182322)
chr4 (9-55)||(4881076-4881122)
chr4 (9-54)||(47066042-47066087)
chr4 (9-54)||(53300398-53300443)
[»] scaffold0227 (1 HSPs)
scaffold0227 (168-285)||(5043-5160)


Alignment Details
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 168 - 303
Target Start/End: Original strand, 33699975 - 33700110
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33699975 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacaccctttgataatgtgagaagcacgcaaatcaaaatcattaaaaatatattaaaaa 33700074  T
Q  268 attacaaaagagttgttgattataccaaaatgatgt 303  Q
    ||| |||||||||||||| || ||||||||||||||    
T  33700075 attgcaaaagagttgttggttgtaccaaaatgatgt 33700110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 170 - 303
Target Start/End: Original strand, 8317324 - 8317457
Alignment:
Q  170 gttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaat 269  Q
    |||||||||| |||||||||||||||  | |||| ||||||||   ||||| |||||||| |||||||||||| |||||| |||||||||||||||||||    
T  8317324 gttgtgttatttgtacaaccaaaattataaaacttatgcaacaatctttgacaatgtgaggagcacgcaaatcaaaatcagtaaaaatatattaaaaaat 8317423  T
Q  270 tacaaaagagttgttgattataccaaaatgatgt 303  Q
      ||||| |||||||| || ||| ||||||||||    
T  8317424 agcaaaaaagttgttggttgtacaaaaatgatgt 8317457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 174 - 303
Target Start/End: Complemental strand, 36193885 - 36193756
Alignment:
Q  174 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattaca 273  Q
    |||||||||||||| |||||||||||||||||||||||| | ||| ||| |||||  ||||||||||||||||||| |||||| |||||| |||||  ||    
T  36193885 tgttatatgtacaatcaaaattgaacaactaatgcaacaccttttaatattgtgaagagcacgcaaatcgaaatcactaaaaaaatattataaaatagca 36193786  T
Q  274 aaagagttgttgattataccaaaatgatgt 303  Q
    |||  ||||||| || ||| ||||||||||    
T  36193785 aaaaggttgttggttgtacaaaaatgatgt 36193756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 17037590 - 17037636
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||    
T  17037590 taaatttagtaacatttgaacaattgttaggtaaagtcagtgttact 17037636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 304
Target Start/End: Complemental strand, 25561269 - 25561138
Alignment:
Q  174 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaatta-c 272  Q
    |||||| ||| |||| ||||||||| |||| ||||||||   ||| |||  ||||| |||| |||||||||||||| |||||  ||||||||||| || |    
T  25561269 tgttatttgtgcaactaaaattgaataacttatgcaacaatctttaatatcgtgaggagcatgcaaatcgaaatcactaaaagaatattaaaaaaatagc 25561170  T
Q  273 aaaagagttgttgattataccaaaatgatgtc 304  Q
    |||| |||||||| || ||| ||||| |||||    
T  25561169 aaaatagttgttggttgtacaaaaataatgtc 25561138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 37233079 - 37233125
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||||||||||| | ||||||||||||| |||||||||||||    
T  37233079 taaatttagtaacatttgagcaattgttaggtatagtccgtgttact 37233125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 42076094 - 42076140
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||||||||||| |||||||||||| |||||||| |||||||    
T  42076094 taaatttagtaacatttgaacaattgttagataaagtccatgttact 42076140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 5079117 - 5079071
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||| |||| || |||||||||||||||||| ||||||||||    
T  5079117 taaatttagcaacacttgaacaattgttaggtaaagcccgtgttact 5079071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 7410871 - 7410917
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||| |||| || |||||||||||||||||| ||||||||||    
T  7410871 taaatttagcaacacttgaacaattgttaggtaaagcccgtgttact 7410917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 9333614 - 9333568
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||||||||||| | ||||||||||||||||||  |||||||    
T  9333614 taaatttagtaacatttgagcaattgttaggtaaagtcgatgttact 9333568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 12042228 - 12042195
Alignment:
Q  11 aatttagtaacatttcaacaattgttaggtaaag 44  Q
    ||||||||||||||| ||||||||||||||||||    
T  12042228 aatttagtaacatttgaacaattgttaggtaaag 12042195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 31069015 - 31068971
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttac 54  Q
    ||||||||||||||||  |||||||||||||||||| |||||||||    
T  31069015 taaatttagtaacattg-aacaattgttaggtaaagcccgtgttac 31068971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 10869484 - 10869516
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggta 41  Q
    ||||||||||||||||| |||||||||||||||    
T  10869484 taaatttagtaacatttgaacaattgttaggta 10869516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 8e-52; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 168 - 303
Target Start/End: Original strand, 10335362 - 10335497
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10335362 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacactctttgataatgtgagaagcacgcaaatcgaaatcattaaaaatagattaaaaa 10335461  T
Q  268 attacaaaagagttgttgattataccaaaatgatgt 303  Q
    ||| |||||||||||||| || || |||||||||||    
T  10335462 attgcaaaagagttgttggttgtatcaaaatgatgt 10335497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 171 - 303
Target Start/End: Complemental strand, 39823498 - 39823366
Alignment:
Q  171 ttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaatt 270  Q
    |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39823498 ttgtgttacatgtacaaccaaaattgaacaactaatgcaacaccctttgataatgtgagaagcacgcaaatcgaaatcattaaaaatagattaaaaaatt 39823399  T
Q  271 acaaaagagttgttgattataccaaaatgatgt 303  Q
     |||||||||||||| || || |||||||||||    
T  39823398 gcaaaagagttgttggttgtatcaaaatgatgt 39823366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 304
Target Start/End: Original strand, 32826592 - 32826722
Alignment:
Q  174 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattaca 273  Q
    |||||| |||||||| |||||||||||||| | ||||||   ||| ||| |||||| | ||||||||||||||||| |||||  |||||||||||| | |    
T  32826592 tgttatttgtacaactaaaattgaacaacttaggcaacaaactttaatattgtgaggaacacgcaaatcgaaatcactaaaagaatattaaaaaataata 32826691  T
Q  274 aaagagttgttgattataccaaaatgatgtc 304  Q
    ||| |||||||| || ||| |||||||||||    
T  32826692 aaatagttgttggttttacaaaaatgatgtc 32826722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 169 - 303
Target Start/End: Complemental strand, 11796713 - 11796587
Alignment:
Q  169 agttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaa 268  Q
    ||||||||||| |||||||||||||||| |||||| |||||||| ||      |||||||| |||||||||||| |||||| |||||||||||||||||     
T  11796713 agttgtgttatttgtacaaccaaaattgtacaacttatgcaacaacac-----aatgtgaggagcacgcaaatcaaaatcagtaaaaatatattaaaaa- 11796620  T
Q  269 ttacaaaagagttgttgattataccaaaatgatgt 303  Q
       ||||| |||||||| || ||| ||||||||||    
T  11796619 --gcaaaaaagttgttggttgtacaaaaatgatgt 11796587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 43899154 - 43899058
Alignment:
Q  174 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatc-attaaaaatatattaaaaaat 269  Q
    |||||| |||||||||||||||||||||||||||||||| | ||| ||| ||| || |||||||||||| ||||| || ||||| ||||||||||||    
T  43899154 tgttatttgtacaaccaaaattgaacaactaatgcaacaccctttaatactgtaaggagcacgcaaatcaaaatcaataaaaaaaatattaaaaaat 43899058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 28321011 - 28321112
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 267  Q
    ||||||||||||||||||||  ||||||| |||||| |||||||| | |||||   |||||| |||||||||||| |||||| ||||||  |||||||||    
T  28321011 gagttgtgttatatgtacaattaaaattggacaacttatgcaacaacctttgactttgtgaggagcacgcaaatcaaaatcaataaaaaagtattaaaaa 28321110  T
Q  268 at 269  Q
    ||    
T  28321111 at 28321112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 6403640 - 6403684
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgtta 53  Q
    ||||||||||||||||| | |||||||||||||||| ||||||||    
T  6403640 taaatttagtaacatttgagcaattgttaggtaaagcccgtgtta 6403684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 6801883 - 6801837
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    |||||||||||||| || |||||||||||||||||| || |||||||    
T  6801883 taaatttagtaacagttgaacaattgttaggtaaagcccctgttact 6801837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 28249128 - 28249082
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||| |||| || |||||||||||||||||| ||||||||||    
T  28249128 taaatttagcaacacttgaacaattgttaggtaaagcccgtgttact 28249082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 45356165 - 45356119
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||| |||| || |||||||||||||||||| ||||||||||    
T  45356165 taaatttagcaacacttgaacaattgttaggtaaagcccgtgttact 45356119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 168 - 303
Target Start/End: Complemental strand, 22609952 - 22609817
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 267  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  22609952 gagttgtattatatgtacaaccaaaattgaacaactaatgcaacaccctttgataatgtgagaagcacgcaaatcaaaatcattaaaaatatatttaaaa 22609853  T
Q  268 attacaaaagagttgttgattataccaaaatgatgt 303  Q
    ||| ||||||||||||||||| || |||||||||||    
T  22609852 attgcaaaagagttgttgattgtatcaaaatgatgt 22609817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 275
Target Start/End: Complemental strand, 37961671 - 37961564
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 267  Q
    ||||||||||||||||||||||||||||| |||| | |||||||| | ||||| | |||||| |||||||||||| |||||| ||||||  |||||||||    
T  37961671 gagttgtgttatatgtacaaccaaaattggacaatttatgcaacaacctttgacattgtgaggagcacgcaaatcaaaatcagtaaaaaagtattaaaaa 37961572  T
Q  268 attacaaa 275  Q
    ||||||||    
T  37961571 attacaaa 37961564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 174 - 303
Target Start/End: Original strand, 46205837 - 46205966
Alignment:
Q  174 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattaca 273  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||| ||| |||||| ||||||  ||||||||||| |||||| |||||| |||||   |    
T  46205837 tgttatatgtacaaccaaaattggacaactaatgcaacaccttttaatattgtgaggagcacgtgaatcgaaatcactaaaaaaatattataaaatagta 46205936  T
Q  274 aaagagttgttgattataccaaaatgatgt 303  Q
    |||  ||||||| || ||| ||||||||||    
T  46205937 aaaaggttgttggttgtacaaaaatgatgt 46205966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 29772495 - 29772422
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaat 241  Q
    ||||| |||||||||||||| || |||||||||||| |||||||| | ||||||| |||||| ||||| |||||    
T  29772495 gagttatgttatatgtacaatcagaattgaacaacttatgcaacaacttttgatattgtgaggagcacacaaat 29772422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 20277413 - 20277378
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaag 44  Q
    ||||||||||||||||| ||||||||||||||||||    
T  20277413 taaatttagtaacatttaaacaattgttaggtaaag 20277378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 26608592 - 26608546
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||||||||||| |||||||||||| ||||| || |||||||    
T  26608592 taaatttagtaacatttgaacaattgttagataaagcccatgttact 26608546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 43202431 - 43202358
Alignment:
Q  231 agcacgcaaatcgaaatcattaaaaatatattaaaaaattacaaaagagttgttgattataccaaaatgatgtc 304  Q
    |||||||||||||||||||  |||||  |||||||||||  ||||| | |||||| || ||| |||||||||||    
T  43202431 agcacgcaaatcgaaatcaccaaaaaagtattaaaaaatagcaaaataattgttggttgtacaaaaatgatgtc 43202358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 8e-52; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 168 - 303
Target Start/End: Original strand, 54383664 - 54383799
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||||||||||||    
T  54383664 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcctttgataacgtgagaagcacgcaaatcaaaattattaaaaatatattaaaaa 54383763  T
Q  268 attacaaaagagttgttgattataccaaaatgatgt 303  Q
    ||| ||||||||||||||  | ||||||||||||||    
T  54383764 attgcaaaagagttgttggctgtaccaaaatgatgt 54383799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 217 - 301
Target Start/End: Original strand, 41410540 - 41410624
Alignment:
Q  217 ttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattacaaaagagttgttgattataccaaaatgat 301  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||  || ||||||||||||    
T  41410540 ttgataatgtgagaagcacgcaaatcaaaattattaaaaatatattaaaaaattgcaaaagagttgttagttgtaccaaaatgat 41410624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 284
Target Start/End: Original strand, 38360172 - 38360288
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 267  Q
    ||||||||||||||||||||||||||||| |||| | |||||||| | ||||| | |||||| |||||||||||  |||||| ||||||  |||||||||    
T  38360172 gagttgtgttatatgtacaaccaaaattggacaatttatgcaacaacctttgacattgtgaggagcacgcaaattaaaatcagtaaaaaagtattaaaaa 38360271  T
Q  268 attacaaaagagttgtt 284  Q
    ||| ||||  |||||||    
T  38360272 attgcaaagaagttgtt 38360288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 205 - 303
Target Start/End: Original strand, 26813971 - 26814069
Alignment:
Q  205 atgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattacaaaagagttgttgattataccaaaatgatgt 303  Q
    |||||||| | ||||| ||||||||||||||||||||| |||||| |||||||||||||||||||   |||| |||||||| || ||| ||||||||||    
T  26813971 atgcaacaacctttgacaatgtgagaagcacgcaaatcaaaatcagtaaaaatatattaaaaaatagtaaaaaagttgttggttgtacaaaaatgatgt 26814069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 8914001 - 8913905
Alignment:
Q  174 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatc-attaaaaatatattaaaaaat 269  Q
    |||||| ||||||| |||||||||||||||||||||||| | ||| ||| |||||| ||||| |||||||||||| || ||||| ||||||||||||    
T  8914001 tgttatttgtacaatcaaaattgaacaactaatgcaacaacctttaatattgtgaggagcacacaaatcgaaatcaataaaaaaaatattaaaaaat 8913905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 41409799 - 41409843
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaaca 212  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  41409799 gagttgtgttatatgtacaatcaaaattgaacaactaatgcaaca 41409843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 26707906 - 26707952
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||||||||||| ||||||||||||||||||||  |||||||    
T  26707906 taaatttagtaacatttgaacaattgttaggtaaagtctctgttact 26707952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 26735681 - 26735727
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||||||||||| ||||||||||||||||| ||| |||||||    
T  26735681 taaatttagtaacatttgaacaattgttaggtaaaatccatgttact 26735727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 1628000 - 1627955
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttac 54  Q
    |||||||||||||| || ||||||||||| ||||||||||||||||    
T  1628000 taaatttagtaacacttgaacaattgttaagtaaagtccgtgttac 1627955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 2943267 - 2943221
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||||||||||  |||||||||||||| ||| ||||||||||    
T  2943267 taaatttagtaacattcgaacaattgttaggttaagcccgtgttact 2943221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 7407807 - 7407761
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||| |||| || |||||||||||||||||| ||||||||||    
T  7407807 taaatttagcaacacttgaacaattgttaggtaaagcccgtgttact 7407761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 9633495 - 9633449
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    |||||||||| |||||| |||||||||||||||||| || |||||||    
T  9633495 taaatttagttacatttaaacaattgttaggtaaagcccctgttact 9633449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 13846039 - 13846085
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||| |||| || |||||||||||||||||| ||||||||||    
T  13846039 taaatttagcaacacttgaacaattgttaggtaaagcccgtgttact 13846085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 16457384 - 16457338
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||||||||||| | ||||||||||||||||  |||||||||    
T  16457384 taaatttagtaacatttgagcaattgttaggtaaagctcgtgttact 16457338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 288
Target Start/End: Complemental strand, 17071986 - 17071896
Alignment:
Q  198 acaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattacaaaagagttgttgatt 288  Q
    |||||||||||||||    || ||| |||||| |||||| ||||| |||| | |||||| |||||||||||||  |||| |||||||||||    
T  17071986 acaactaatgcaacaatccttaatattgtgaggagcacgtaaatcaaaatgaataaaaaaatattaaaaaattgtaaaaaagttgttgatt 17071896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 168 - 303
Target Start/End: Original strand, 34576148 - 34576283
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 267  Q
    |||||||||||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34576148 gagttgtgttatatatacaatcaaaattgaacaactaatgcaacaccttttgataatgtgagaagcacgcaaatcaaaatcattaaaaatatattaaaaa 34576247  T
Q  268 attacaaaagagttgttgattataccaaaatgatgt 303  Q
    ||| |||||||||||||  || || |||||||||||    
T  34576248 attgcaaaagagttgttagttgtatcaaaatgatgt 34576283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 174 - 285
Target Start/End: Original strand, 6266433 - 6266544
Alignment:
Q  174 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattaca 273  Q
    |||||| |||||||| |||||||||||||| || ||||| | ||| ||| |||||| ||||||||||||||||||| |||||| ||||||||||||  ||    
T  6266433 tgttatttgtacaactaaaattgaacaacttatacaacaacctttaatattgtgaggagcacgcaaatcgaaatcactaaaaaaatattaaaaaatagca 6266532  T
Q  274 aaagagttgttg 285  Q
    ||| ||||||||    
T  6266533 aaatagttgttg 6266544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 9961146 - 9961247
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 267  Q
    |||||||||||| |||||||| |||||||||||| ||||| |||| ||| | | | ||||||||||||| |||||||||||| | |||| ||||||||||    
T  9961146 gagttgtgttatttgtacaactaaaattgaacaattaatgtaacaccatataacattgtgagaagcacgtaaatcgaaatcaatcaaaaaatattaaaaa 9961245  T
Q  268 at 269  Q
    ||    
T  9961246 at 9961247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 16734852 - 16734898
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  16734852 taaatttagcaacatttgaacaattgttaggtaaagcccgtgttact 16734898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 23264549 - 23264503
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||||    
T  23264549 taaatttagtaacattcgaacaattgttaggtaaaatccgtgttact 23264503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 266
Target Start/End: Complemental strand, 33029775 - 33029677
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaa 266  Q
    |||||||||||| | |||||||||||||| |||||||| |||||| ||| | | | |||||  |||| | |||||||||||| | |||| |||||||||    
T  33029775 gagttgtgttatttatacaaccaaaattggacaactaacgcaacaccatataacattgtgatgagcatgtaaatcgaaatcaatcaaaaaatattaaaa 33029677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 4485618 - 4485574
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgtta 53  Q
    |||||||||||| |||| || ||||||||||||||||||||||||    
T  4485618 taaatttagtaatatttgaataattgttaggtaaagtccgtgtta 4485574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 14113464 - 14113393
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaa 239  Q
    ||||||||||||||||||||  ||||||| | || | |||||||| | ||||||| |||||| |||||||||    
T  14113464 gagttgtgttatatgtacaattaaaattggataatttatgcaacaacctttgatattgtgaggagcacgcaa 14113393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 29667968 - 29667933
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaag 44  Q
    ||||||||||||||||| ||||||||||||||||||    
T  29667968 taaatttagtaacatttgaacaattgttaggtaaag 29667933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 23904403 - 23904370
Alignment:
Q  11 aatttagtaacatttcaacaattgttaggtaaag 44  Q
    ||||||||||||||| ||||||||||||||||||    
T  23904403 aatttagtaacatttgaacaattgttaggtaaag 23904370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 27969968 - 27969924
Alignment:
Q  11 aatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||| ||||||||||||| ||||||||||||||  |||||||    
T  27969968 aatttagcaacatttcaacaaatgttaggtaaagtctatgttact 27969924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 168 - 303
Target Start/End: Complemental strand, 6797566 - 6797432
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 267  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  6797566 gagttgtgttatatgtacaactaaaattgaacaactaatgcaacaccctttaataatgtgagaagcacgcaaattaaaatcattaaaaatatattaaaaa 6797467  T
Q  268 attacaaaagagttgttgattataccaaaatgatgt 303  Q
    ||||  |||||||| ||| || || |||||||||||    
T  6797466 atta-taaagagttattggttgtatcaaaatgatgt 6797432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 168 - 303
Target Start/End: Original strand, 47030428 - 47030563
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 267  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||| |||| |||||||||||||||||| |||||     
T  47030428 gagttgttttatatgtacaaccaaaattgaacaactaatgcaacaaccattgataatgtgagaagcacgtaaattgaaatcattaaaaatatagtaaaat 47030527  T
Q  268 attacaaaagagttgttgattataccaaaatgatgt 303  Q
    ||| |||||||||| ||| || |||||||| |||||    
T  47030528 attgcaaaagagttattggttgtaccaaaacgatgt 47030563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 168 - 303
Target Start/End: Complemental strand, 1141618 - 1141484
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaag-cacgcaaatcgaaatcattaaaaatatattaaaa 266  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||| |||||  ||||||||| |||| ||| |||||||||| |||    
T  1141618 gagttgtgttatatgtacaaccaaaattgaataactaatgcaacaccctttaataatgtaagaagaaacgcaaatcaaaattatt-aaaatatatt-aaa 1141521  T
Q  267 aattacaaaagagttgttgattataccaaaatgatgt 303  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  1141520 aattacaaaagagttgttggttatactaaaatgatgt 1141484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 168 - 303
Target Start/End: Original strand, 26028970 - 26029105
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 267  Q
    |||||||||||| |||||||| ||||||| |||||| || |||||   ||||| |||||||| |||||||||||| |||||| |||||||||||||||||    
T  26028970 gagttgtgttatttgtacaactaaaattgtacaacttatacaacaatctttgacaatgtgaggagcacgcaaatcaaaatcagtaaaaatatattaaaaa 26029069  T
Q  268 attacaaaagagttgttgattataccaaaatgatgt 303  Q
    || |||||| |||||||| || ||| ||||||||||    
T  26029070 ataacaaaaaagttgttgcttgtacaaaaatgatgt 26029105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 255
Target Start/End: Original strand, 50797990 - 50798077
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaa 255  Q
    |||||||||||||||||||||||||||||||| || ||||||||| | |||||||||||||||||||| |||||  ||||||||||||    
T  50797990 gagttgtgttatatgtacaaccaaaattgaacgacaaatgcaacaccctttgataatgtgagaagcacacaaattaaaatcattaaaa 50798077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 198 - 303
Target Start/End: Complemental strand, 49775808 - 49775703
Alignment:
Q  198 acaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattacaaaagagttgttgattataccaaaa 297  Q
    |||||| |||||||| | ||||| |||||||  |||||||||||| |||||| ||||||||||||||||||| |||||| |||||||| || ||| ||||    
T  49775808 acaacttatgcaacaacctttgacaatgtgaagagcacgcaaatcaaaatcaataaaaatatattaaaaaataacaaaaaagttgttggttgtacaaaaa 49775709  T
Q  298 tgatgt 303  Q
    ||||||    
T  49775708 tgatgt 49775703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 304
Target Start/End: Original strand, 9245795 - 9245925
Alignment:
Q  174 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattaca 273  Q
    |||||| ||||||| ||||||||||||||| |||||||| | ||| ||| ||||||  | ||||||||  ||||||||||||  ||||||||||||  ||    
T  9245795 tgttatttgtacaatcaaaattgaacaacttatgcaacaacttttaatattgtgaggtgtacgcaaataaaaatcattaaaagaatattaaaaaatagca 9245894  T
Q  274 aaagagttgttgattataccaaaatgatgtc 304  Q
    ||| |||||||| || ||| |||||||||||    
T  9245895 aaatagttgttggttgtacaaaaatgatgtc 9245925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 12189999 - 12190045
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||    
T  12189999 taaatttagtaacatttgaacaattgttaggtaaagcccgtgttact 12190045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 30057568 - 30057667
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 267  Q
    ||||| |||||| |||||||||||||||| ||  || |||||||| | ||||| |||||||| | ||| |||||| |||||| || ||||||||||||||    
T  30057568 gagttatgttatttgtacaaccaaaattgtac--cttatgcaacaacttttgacaatgtgaggaacactcaaatcaaaatcagtacaaatatattaaaaa 30057665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 40428471 - 40428556
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaa 256  Q
    |||||||||||| |||||||| ||||||| ||||||    ||||| | ||||| ||||||||||||||||||||| |||||| ||||||    
T  40428471 gagttgtgttatttgtacaactaaaattgtacaactt---caacaacctttgacaatgtgagaagcacgcaaatcaaaatcagtaaaaa 40428556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 3399669 - 3399703
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaa 43  Q
    ||||||||||||||||| |||||||||||||||||    
T  3399669 taaatttagtaacatttgaacaattgttaggtaaa 3399703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 16222826 - 16222871
Alignment:
Q  10 aaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||||||| || || ||||||||||||||| ||||||||||    
T  16222826 aaatttagtaacacttgaataattgttaggtaaagcccgtgttact 16222871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 1844001 - 1844033
Alignment:
Q  11 aatttagtaacatttcaacaattgttaggtaaa 43  Q
    ||||||||||||||| |||||||||||||||||    
T  1844001 aatttagtaacatttgaacaattgttaggtaaa 1844033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 15204639 - 15204675
Alignment:
Q  7 actaaatttagtaacatttcaacaattgttaggtaaa 43  Q
    |||||||||||||||| || |||||||||||||||||    
T  15204639 actaaatttagtaacacttgaacaattgttaggtaaa 15204675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 176 - 298
Target Start/End: Original strand, 35769 - 35889
Alignment:
Q  176 ttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattacaaa 275  Q
    ||||||||||||||||| |||||||||||||| |||||  ||||| | |||||| ||||||||||||||||| |||||||| ||||||||||| | ||||    
T  35769 ttatatgtacaaccaaatttgaacaactaatgtaacattttttgacattgtgaggagcacgcaaatcgaaattattaaaaa-atattaaaaaa-tccaaa 35866  T
Q  276 agagttgttgattataccaaaat 298  Q
    ||||||||||||| |||||||||    
T  35867 agagttgttgattgtaccaaaat 35889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 168 - 303
Target Start/End: Complemental strand, 40611716 - 40611581
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 267  Q
    |||||||||||| |||||||| | | ||| |||||| |||||||| | ||||| |||||||| |||||||||||| |||||| |||||||||||||||||    
T  40611716 gagttgtgttatttgtacaacgatatttgtacaacttatgcaacaacctttgacaatgtgaggagcacgcaaatcaaaatcaataaaaatatattaaaaa 40611617  T
Q  268 attacaaaagagttgttgattataccaaaatgatgt 303  Q
    ||  ||||| |||||||| || ||| ||||||||||    
T  40611616 atagcaaaaaagttgttggttgtacaaaaatgatgt 40611581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 171 - 303
Target Start/End: Original strand, 33425104 - 33425235
Alignment:
Q  171 ttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaatt 270  Q
    ||||||||||||||||  |||||||| |||||| ||||||||   ||||||| ||||||||||||||||||| |||||| |||||| |||||||||| ||    
T  33425104 ttgtgttatatgtacattcaaaattggacaacttatgcaacaatctttgatattgtgagaagcacgcaaatcaaaatcaataaaaa-atattaaaaattt 33425202  T
Q  271 acaaaagagttgttgattataccaaaatgatgt 303  Q
      |||  |||||||| |||||| ||||||||||    
T  33425203 gtaaagaagttgttggttatacaaaaatgatgt 33425235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 303
Target Start/End: Complemental strand, 24442077 - 24441967
Alignment:
Q  193 attgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattacaaaagagttgttgattatac 292  Q
    |||| ||||||||||||||| | ||| ||| |||||| |||| |||||||||||||| |||||| |||||| |||||  |||||  ||||||| || |||    
T  24442077 attggacaactaatgcaacaccttttaatattgtgaggagcatgcaaatcgaaatcactaaaaaaatattataaaatagcaaaaaggttgttggttgtac 24441978  T
Q  293 caaaatgatgt 303  Q
     ||||||||||    
T  24441977 aaaaatgatgt 24441967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 11017504 - 11017550
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||    
T  11017504 taaatttagtaacatttgaccaattgttaggtaaagtccgtgttact 11017550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 7718232 - 7718278
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||||||||  | |||||||||||| ||||||||||||||||    
T  7718232 taaatttagtaacacatgaacaattgttagataaagtccgtgttact 7718278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 24479199 - 24479245
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||||||||||| ||||||| ||||||||||  |||||||||    
T  24479199 taaatttagtaacatttgaacaattcttaggtaaagctcgtgttact 24479245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 41573440 - 41573486
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    |||||||||||||| || |||||||||||||||||  ||||||||||    
T  41573440 taaatttagtaacagttaaacaattgttaggtaaaccccgtgttact 41573486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 22966573 - 22966618
Alignment:
Q  10 aaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    ||||||||| |||||| |||||||||||||||||| || |||||||    
T  22966573 aaatttagttacatttaaacaattgttaggtaaagcccctgttact 22966618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 30267050 - 30267095
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttac 54  Q
    ||||||||||||||  | |||||||||||||||||| |||||||||    
T  30267050 taaatttagtaacacctgaacaattgttaggtaaagcccgtgttac 30267095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 304
Target Start/End: Complemental strand, 2933701 - 2933571
Alignment:
Q  174 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattaca 273  Q
    |||||| ||||||||||||||||||||||||||| ||||   ||| ||| |||||| ||| |||||||| |||||| |||||| ||||||||||||   |    
T  2933701 tgttatttgtacaaccaaaattgaacaactaatgtaacaatttttaatattgtgaggagcgcgcaaatcaaaatcactaaaaaaatattaaaaaatagta 2933602  T
Q  274 aaagagttgttgattataccaaaatgatgtc 304  Q
    ||| |||||||| || ||| |||||||||||    
T  2933601 aaatagttgttggttgtacaaaaatgatgtc 2933571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 21317585 - 21317684
Alignment:
Q  57 ctttatatttttataacactttttgtatcatcaataacattnnnnnnntgtcacaaaattggtttctctttgtaacactttttgtattaccaataacatt 156  Q
    |||||||||||| ||||||||||||||||  ||||||||||       |||||||||| ||| ||||||||||||| |||||||||||||||||||||||    
T  21317585 ctttatatttttgtaacactttttgtatcgccaataacattaaaaaaatgtcacaaaagtggattctctttgtaactctttttgtattaccaataacatt 21317684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 168 - 303
Target Start/End: Original strand, 4641601 - 4641737
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaata-tattaaaa 266  Q
    ||||||||| ||||||||||||||||||| | || | |||||||| | ||||| | ||||||||||||||||||  |||||| |||||| | ||||||||    
T  4641601 gagttgtgtaatatgtacaaccaaaattggataatttatgcaacaacctttgacattgtgagaagcacgcaaattaaaatcaataaaaaaagtattaaaa 4641700  T
Q  267 aattacaaaagagttgttgattataccaaaatgatgt 303  Q
    |||| ||||  |||||||| || ||| ||||| ||||    
T  4641701 aattgcaaagaagttgttggttgtacaaaaattatgt 4641737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 174 - 304
Target Start/End: Original strand, 4734121 - 4734251
Alignment:
Q  174 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaaattaca 273  Q
    |||||| |||| || ||||||||||||| | |||||||| | ||| ||| |||||| ||||||| |||| |||||| |||||  ||||||||||||  ||    
T  4734121 tgttatttgtataatcaaaattgaacaatttatgcaacaacttttaatattgtgaggagcacgccaatcaaaatcactaaaagaatattaaaaaatagca 4734220  T
Q  274 aaagagttgttgattataccaaaatgatgtc 304  Q
    ||| |||||||| || ||| |||||||||||    
T  4734221 aaatagttgttggttgtacaaaaatgatgtc 4734251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 21317477 - 21317531
Alignment:
Q  1 aatgttactaaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  21317477 aatgttactaaatttagtaacatttcaacaattgttaggtaaaggctgtgttact 21317531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 303
Target Start/End: Complemental strand, 12842425 - 12842295
Alignment:
Q  174 tgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatca-ttaaaaatatattaaaaaattac 272  Q
    |||||| ||||||||||||||| |||||||||| ||||| | ||| ||| |||||| | || ||||||| |||||| | ||||| ||||||||||||  |    
T  12842425 tgttatttgtacaaccaaaattcaacaactaatacaacaacctttaatattgtgaggaacatgcaaatcaaaatcactaaaaaaaatattaaaaaatagc 12842326  T
Q  273 aaaagagttgttgattataccaaaatgatgt 303  Q
    |||  |||||||| || ||| ||||||||||    
T  12842325 aaagaagttgttggttgtacaaaaatgatgt 12842295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 269
Target Start/End: Original strand, 45283081 - 45283182
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 267  Q
    ||||| |||||| |||||||  ||||||| | ||||||||||| | ||| | | |||||||| || | |||||||||||||| |||||| ||||||||||    
T  45283081 gagttatgttatttgtacaattaaaattggagaactaatgcaataccatataacaatgtgaggagtatgcaaatcgaaatcaataaaaaaatattaaaaa 45283180  T
Q  268 at 269  Q
    ||    
T  45283181 at 45283182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 268
Target Start/End: Complemental strand, 40262509 - 40262409
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 267  Q
    |||||||||||| |||||| | ||||||| ||||||||||||||| ||||| | |   |||| |||| |||||| ||||||| | |||| ||||||||||    
T  40262509 gagttgtgttatttgtacatctaaaattggacaactaatgcaacaccattttacatcttgaggagcatgcaaattgaaatcagtcaaaaaatattaaaaa 40262410  T
Q  268 a 268  Q
    |    
T  40262409 a 40262409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 42989750 - 42989793
Alignment:
Q  169 agttgtgttatatgtacaaccaaaattgaacaactaatgcaaca 212  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  42989750 agttgtattatttgtacaaccaaaattgaacaactaatgcaaca 42989793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 246
Target Start/End: Original strand, 16182244 - 16182322
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaa 246  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||| ||  | | |||||||| |||| |||||| ||||    
T  16182244 gagttgtgttattcgtacaaccaaaattggacaactaatgcaacaccaaataacaatgtgaggagcatgcaaattgaaa 16182322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 4881122 - 4881076
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttact 55  Q
    |||||||||||| ||||  | ||||||||||||||||||||||||||    
T  4881122 taaatttagtaatatttgtataattgttaggtaaagtccgtgttact 4881076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 47066087 - 47066042
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttac 54  Q
    ||||||||||||||  | |||||||||||||||||| |||||||||    
T  47066087 taaatttagtaacacctgaacaattgttaggtaaagcccgtgttac 47066042  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 53300398 - 53300443
Alignment:
Q  9 taaatttagtaacatttcaacaattgttaggtaaagtccgtgttac 54  Q
    ||||||||||||||  | |||||||||||||||||| |||||||||    
T  53300398 taaatttagtaacacctaaacaattgttaggtaaagcccgtgttac 53300443  T

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Target: scaffold0227 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 285
Target Start/End: Original strand, 5043 - 5160
Alignment:
Q  168 gagttgtgttatatgtacaaccaaaattgaacaactaatgcaacatcatttgataatgtgagaagcacgcaaatcgaaatcattaaaaatatattaaaaa 267  Q
    ||||||||||||||||||||| ||||||| |||| | ||||||||   ||||||| ||| || | |||||||||| |||||||||||||  |||||||||    
T  5043 gagttgtgttatatgtacaactaaaattggacaatttatgcaacaatctttgatattgtaaggaacacgcaaatcaaaatcattaaaaaagtattaaaaa 5142  T
Q  268 attacaaaagagttgttg 285  Q
    ||| ||||  ||||||||    
T  5143 attgcaaagaagttgttg 5160  T

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