View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7178_low_2 (Length: 457)
Name: NF7178_low_2
Description: NF7178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7178_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 12989826 - 12989370
Alignment:
| Q |
1 |
tcatcgataacgggtgagttttcttagcaataatttaaaatattttgattgttctagcaggcaatgttagagttatataatttggtttatataaatccag |
100 |
Q |
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| T |
12989826 |
tcatcgataacgggtgagttttcttagcaatcatttaaaatattttgattgttctagcaggcaatgttagagttatataatttggtttatataaatccag |
12989727 |
T |
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| Q |
101 |
catcattcatgtgaaagcctcctaggcttgaagcatgatgaactacagactaacaattcaaagctatgttacacaactccagattttaaattaaaataaa |
200 |
Q |
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| T |
12989726 |
catcattcatgtgaaagcctcctaggcttgaagcatgacgaactacagactaacaattcaaagctatgttacacaactccagattttaaattaaaataaa |
12989627 |
T |
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| Q |
201 |
tggtactttcacatcggattagggtaggaagaatagggttggacattgttgccgcacagtcctggaaccaaaatgaccatgtaaagttgtgattatttcc |
300 |
Q |
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| T |
12989626 |
tggtactttcacatcggattagggtaggaagaatagggttggacattgttgccgcacagtcctagaaccaaaatgaccatgtaaagttgtgattatttcc |
12989527 |
T |
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| Q |
301 |
aatactagatgtttatggtttgtttgtcggatattcttacacatatagtggaagaataccagagaaatattttctatttccatttcctgtttcgaatttt |
400 |
Q |
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| T |
12989526 |
aatactagatgtttatgatttgtttgtcggatattcttacacatatagtggaagaataccagagaaatattttctatttccatttcctgtttcgaatttt |
12989427 |
T |
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| Q |
401 |
agttacacaaactttaccttgttttaatcatgtatgtttgatcttattaggagaagt |
457 |
Q |
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| T |
12989426 |
agttacacaaactttaccttgttttaatcatgtatgtttgatctaattaggagaagt |
12989370 |
T |
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