View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7178_low_20 (Length: 257)

Name: NF7178_low_20
Description: NF7178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7178_low_20
NF7178_low_20
[»] chr7 (2 HSPs)
chr7 (1-245)||(5952981-5953225)
chr7 (5-239)||(13583275-13583510)
[»] chr6 (4 HSPs)
chr6 (1-239)||(7022554-7022792)
chr6 (3-245)||(26292379-26292623)
chr6 (4-229)||(34252052-34252277)
chr6 (1-245)||(10570377-10570622)
[»] chr8 (2 HSPs)
chr8 (1-245)||(15917346-15917590)
chr8 (1-105)||(8567698-8567802)
[»] chr1 (3 HSPs)
chr1 (1-245)||(5170988-5171232)
chr1 (3-229)||(6770757-6770988)
chr1 (1-129)||(33931577-33931707)
[»] chr3 (3 HSPs)
chr3 (1-239)||(55429045-55429284)
chr3 (1-245)||(29018703-29018946)
chr3 (65-222)||(17065317-17065474)
[»] chr4 (3 HSPs)
chr4 (1-239)||(19816435-19816673)
chr4 (46-245)||(21374852-21375052)
chr4 (156-244)||(31619229-31619317)
[»] chr2 (2 HSPs)
chr2 (8-245)||(29763013-29763253)
chr2 (112-200)||(16091065-16091153)
[»] chr5 (3 HSPs)
chr5 (5-181)||(35946850-35947027)
chr5 (37-127)||(28175138-28175228)
chr5 (144-195)||(28175088-28175139)


Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 5952981 - 5953225
Alignment:
Q  1 tccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  5952981 tccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcccgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacat 5953080  T
Q  101 acaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatct 200  Q
    |||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5953081 acaattcggctgccaaacaagaagtaataccacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatct 5953180  T
Q  201 cccaggattagaaagagaactaccgtcaacattaacttttatgat 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  5953181 cccaggattagaaagagaactaccgtcaacattaacttttatgat 5953225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 13583510 - 13583275
Alignment:
Q  5 acatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacatacaa 104  Q
    ||||||||| || | | |||| ||||||||| ||||||||||||||| || |||| ||  ||||||| |||| |||||||| ||||||  || |||||||    
T  13583510 acatgattagataatgagccaccctagaatcagattcaagaataatgctcttgtgtccaacatcatatgcaatacgaaggctatgaaaggtggcatacaa 13583411  T
Q  105 ttcgaccgccaaacaagaagtaa-tacaacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatctccc 203  Q
    |||  |    || |||||| ||| ||| ||||||  |||  |||| || |||| ||| ||||||||||||||| |||||| ||||||||| |||| |||     
T  13583410 ttcagctctgaagcaagaaataaataccacaaaaaccagtgaaactcaacaactaattaccattattgtttctcataagatctccaaaacgtgatatcct 13583311  T
Q  204 aggattagaaagagaactaccgtcaacattaacttt 239  Q
    | ||||||||||| ||||||  ||||||||||||||    
T  13583310 atgattagaaagaaaactactatcaacattaacttt 13583275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 7022792 - 7022554
Alignment:
Q  1 tccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacat 100  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  7022792 tccgacatgattaaatcaagagccatcctagaatctgactcaagaataatgttcatgtagcccgcaccatacgcaatacgaaggccatgaaaaatgacat 7022693  T
Q  101 acaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatct 200  Q
    |||||||| ||||||| ||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7022692 acaattcggccgccaagcaagaagtaataccacaaaatccaaaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatct 7022593  T
Q  201 cccaggattagaaagagaactaccgtcaacattaacttt 239  Q
      |||||||||||||||||||||||||||||||||||||    
T  7022592 ttcaggattagaaagagaactaccgtcaacattaacttt 7022554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 26292379 - 26292623
Alignment:
Q  3 cgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacatac 102  Q
    ||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| |||||    
T  26292379 cgacatgtttaaatcaagagccctcctagaatctgattcaagaataatgttcatgtagcctgcatcatacgcaatacgaaggccatgaaaaatggcatac 26292478  T
Q  103 aattcgaccgccaaacaagaagtaatacaacaaaattc--agaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatct 200  Q
    |||||| ||||||| ||||||||||||| ||||||| |  | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26292479 aattcggccgccaagcaagaagtaataccacaaaatccataaaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaaactgatct 26292578  T
Q  201 cccaggattagaaagagaactaccgtcaacattaacttttatgat 245  Q
     ||| |||||||||||||| ||||||||||||||||||| |||||    
T  26292579 tccatgattagaaagagaaataccgtcaacattaactttgatgat 26292623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 34252277 - 34252052
Alignment:
Q  4 gacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacataca 103  Q
    ||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||| ||| |||||||||| || ||||||||||||||||||| ||||||    
T  34252277 gacatgattaaatcaagagccatcctagaatctcactcaagaataatgttcttgtagcctgcatcatacgtaatacgaaggccatgaaaaatggcataca 34252178  T
Q  104 attcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatctccc 203  Q
    ||||| ||||||| ||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||  |    
T  34252177 attcggccgccaagcaagaagtaataccacaaaatacagaaaaatccagcaaccaatcaccattattgtttctaataaaacctccaaaacccgatctttc 34252078  T
Q  204 aggattagaaagagaactaccgtcaa 229  Q
    || |||||||||||||||||||||||    
T  34252077 agaattagaaagagaactaccgtcaa 34252052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 10570622 - 10570377
Alignment:
Q  1 tccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacgaaggccatgaaaaa-tgaca 99  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||| ||||||||   |  ||    
T  10570622 tccgacataattaaattaagagccatcctagaatctgattcaagaataatgttcacatggcccgcatcatacgcaatacgaagaccatgaaattgtttca 10570523  T
Q  100 tacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatc 199  Q
    |||||||||||| |||| ||| || |||||| ||||||   ||||| ||||| ||||||||||   |||| ||||||||||||||||||||||||| ||     
T  10570522 tacaattcgaccaccaagcaaaaaataataccacaaaaactagaaagacccaacaaccaatcattgttatggtttctaataagacctccaaaaccttata 10570423  T
Q  200 tcccaggattagaaagagaactaccgtcaacattaacttttatgat 245  Q
    | ||||||||||||||||||||| ||  |||||||||||| |||||    
T  10570422 ttccaggattagaaagagaactatcgctaacattaactttgatgat 10570377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 15917346 - 15917590
Alignment:
Q  1 tccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacat 100  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||    
T  15917346 tccgacatgattaaatcaagagccatcctaaaatctgattcaagaataatgttcttgtgacccgcatcatacgcaatacgaaggccatgaaaaatgacat 15917445  T
Q  101 acaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatct 200  Q
    |||||| | ||||||| ||||||||||||| |||||||  | |||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||    
T  15917446 acaatttggccgccaagcaagaagtaataccacaaaatctataaaaacccagcaaccaatcaccattactttttcaaataagacctccaaaacctgatct 15917545  T
Q  201 cccaggattagaaagagaactaccgtcaacattaacttttatgat 245  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  15917546 cccaggattagaaagagaactaccgtcaacattaactttgatgat 15917590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 8567698 - 8567802
Alignment:
Q  1 tccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacat 100  Q
    ||||||||||||| |||||  |||| | ||||||||||||||||||||||||||   || |||||||||||||||| ||||||||| |||||||||||||    
T  8567698 tccgacatgattagatcaaaagccaccatagaatctgattcaagaataatgttcccttgacccgcatcatacgcaatacgaaggccgtgaaaaatgacat 8567797  T
Q  101 acaat 105  Q
    |||||    
T  8567798 acaat 8567802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 5171232 - 5170988
Alignment:
Q  1 tccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacat 100  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||  ||| ||||||||||||||||| || |||||||||||||||| |||    
T  5171232 tccgacatgattaaatcaagagccatcctagaatctgactcaagaataatgtttttgtagcccgcatcatacgcaatacaaaggccatgaaaaatggcat 5171133  T
Q  101 acaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatct 200  Q
    |||||||| |||||||  |||||||||||| ||||||| |||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  5171132 acaattcggccgccaagtaagaagtaataccacaaaatccagaaaaatccagcaaccaatcaccattattgtcactaataagacctccaaaacctgatct 5171033  T
Q  201 cccaggattagaaagagaactaccgtcaacattaacttttatgat 245  Q
     |||||||||||||||||||||||||||||||||||||| |||||    
T  5171032 tccaggattagaaagagaactaccgtcaacattaactttgatgat 5170988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 6770988 - 6770757
Alignment:
Q  3 cgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacatac 102  Q
    |||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| |||||||||||||||| | |||| |||| ||||||| |||||    
T  6770988 cgacatgattaaatcaagagccatcctataatttgattcaagaataatgttcatgtgacccgcatcatacgcaatatgaagaccataaaaaatggcatac 6770889  T
Q  103 aattcgaccgccaaacaagaagtaatacaacaaaattcag-----aaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacctga 197  Q
    |||||| ||||||| ||||||||||||| |||||||  ||     |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6770888 aattcggccgccaagcaagaagtaataccacaaaatctagaagaaaaaaacccagcaaccaatcaccattattgtttcttataagacctccaaaacctga 6770789  T
Q  198 tctcccaggattagaaagagaactaccgtcaa 229  Q
    ||||||| ||| ||||||| ||||||||||||    
T  6770788 tctcccatgatcagaaagataactaccgtcaa 6770757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 33931577 - 33931707
Alignment:
Q  1 tccgacatgattaaatcaa--gggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacgaaggccatgaaaaatgac 98  Q
    |||||||||||||||||||  | | ||||||| |||||||||||| ||||||||||||||| |||||||||||||||| |||||| |||| ||||||| |    
T  33931577 tccgacatgattaaatcaaaagagtcatcctaaaatctgattcaaaaataatgttcatgtgacccgcatcatacgcaatacgaagaccataaaaaatggc 33931676  T
Q  99 atacaattcgaccgccaaacaagaagtaata 129  Q
    |||||||||| ||| ||||||||||||||||    
T  33931677 atacaattcggccgtcaaacaagaagtaata 33931707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 55429045 - 55429284
Alignment:
Q  1 tccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacgaaggccatg-aaaaatgaca 99  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| ||    
T  55429045 tccgacatgattaaatcaatagccatcctggaatctgattcaagaataatgttcatgtggcccgcatcatacgcaatacgaaggccgtgcaaaaatggca 55429144  T
Q  100 tacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatc 199  Q
    ||||||||  | ||||| || |||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  55429145 tacaattcagctgccaagcaggaagtaataccacaaaatccagaaaaacccagcaaccagtcaccattattgtttctaataagacctccaaaacctgatc 55429244  T
Q  200 tcccaggattagaaagagaactaccgtcaacattaacttt 239  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  55429245 tcccaggatttgaaagagaactaccgtcaacattaacttt 55429284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 29018703 - 29018946
Alignment:
Q  1 tccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacat 100  Q
    ||||||||||||| |||||| | || | |||||||| |||||||||||||||||||||| ||||||||| || ||| ||||||||||||||||||| |||    
T  29018703 tccgacatgattagatcaagagtcaccttagaatctaattcaagaataatgttcatgtgacccgcatcacacacaatacgaaggccatgaaaaatggcat 29018802  T
Q  101 acaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatct 200  Q
    |||||| | | ||||| ||||||||||||| |||||| ||||||||||  | || ||||||||||||||| ||| | |||||||||||||||||||||||    
T  29018803 acaatttggcagccaagcaagaagtaataccacaaaaatcagaaaaacaaaacatccaatcaccattatt-tttttgataagacctccaaaacctgatct 29018901  T
Q  201 cccaggattagaaagagaactaccgtcaacattaacttttatgat 245  Q
     ||| ||||||||||||||||||||||||| |||||||| |||||    
T  29018902 tccaagattagaaagagaactaccgtcaacgttaactttgatgat 29018946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 222
Target Start/End: Original strand, 17065317 - 17065474
Alignment:
Q  65 catcatacgcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcacc 164  Q
    ||||||| | |||||||||| |||  |||||| ||||||||||  | |||||  || || |||||| | |||| ||| | ||||||| |||||||||||     
T  17065317 catcataagtaacacgaaggtcatataaaatggcatacaattctgctgccaagtaaaaaataataccataaaaatcaaagaaacccaacaaccaatcact 17065416  T
Q  165 attattgtttctaataagacctccaaaacctgatctcccaggattagaaagagaacta 222  Q
    |||| |  ||||  |||||||  |||||||| |||| |||  |||||| |||||||||    
T  17065417 attactacttcttttaagaccgtcaaaaccttatcttccaatattagatagagaacta 17065474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 19816435 - 19816673
Alignment:
Q  1 tccgacatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |||| ||||||||||||||||||  |||    
T  19816435 tccgacatgattaaatcaagagccatcctagaatctgattcaagaataatgctcatatggcccgcatcatatgcaatacgaaggccatgaaaaatagcat 19816534  T
Q  101 acaattcgaccgccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatct 200  Q
    |||||||  ||||||| ||||||||||||| ||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  19816535 acaattcagccgccaagcaagaagtaataccacaaaatccagaaaaaccccggaaccaatcaccattattgtttctaataagacctccaaaacctgatct 19816634  T
Q  201 cccaggattagaaagagaactaccgtcaacattaacttt 239  Q
     |||| |||||||||||||||| ||||||||||||||||    
T  19816635 tccagaattagaaagagaactatcgtcaacattaacttt 19816673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 21375052 - 21374852
Alignment:
Q  46 ataatgttcatgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaatacaacaaaattcagaaa 145  Q
    ||||||||| |||||||||||| ||| |||| |||||||| |||||||||| ||||||||| | ||| |||  |||||||||||| ||||||||||||||    
T  21375052 ataatgttcctgtggcccgcattatatgcaatacgaaggcaatgaaaaatggcatacaatttgtccgtcaagaaagaagtaataccacaaaattcagaaa 21374953  T
Q  146 aacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatctccca-ggattagaaagagaactaccgtcaacattaacttttatga 244  Q
    |||||| |||||||||||| |||||||||||||||| |||||||||||||||||| |||   ||||||||||||||||||||||||||||||||| ||||    
T  21374952 aacccaacaaccaatcaccgttattgtttctaataaaacctccaaaacctgatcttccattaattagaaagagaactaccgtcaacattaactttgatga 21374853  T
Q  245 t 245  Q
    |    
T  21374852 t 21374852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 31619229 - 31619317
Alignment:
Q  156 ccaatcaccattattgtttctaataagacctccaaaacctgatctcccaggattagaaagagaactaccgtcaacattaacttttatga 244  Q
    ||||||||||||||||||||| ||||||||||||||| | | ||| |  |||||| ||| ||||||| |||||||||||||||| ||||    
T  31619229 ccaatcaccattattgtttcttataagacctccaaaatccggtcttcatggattaaaaatagaactatcgtcaacattaactttaatga 31619317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 245
Target Start/End: Complemental strand, 29763253 - 29763013
Alignment:
Q  8 tgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacatacaattc 107  Q
    ||||||||||||| |||| ||||| |||  ||||||||||||||||| |||| ||| ||||||||| || ||||||| |||||||||||||||| |||||    
T  29763253 tgattaaatcaagagccaccctagtatcaaattcaagaataatgttcttgtgccccacatcatacgtaatacgaaggtcatgaaaaatgacatataattc 29763154  T
Q  108 gaccgccaaacaagaagtaat---acaacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatctccca 204  Q
       ||| || |||||||||||   || |||||| || | |||||||| ||| |||||||||||||||||||| |||||||||| ||  || |||||  ||    
T  29763153 tgtcgctaagcaagaagtaataaaaccacaaaaatccggaaaacccaacaatcaatcaccattattgtttcttataagacctcaaattcccgatctttca 29763054  T
Q  205 ggattagaaagagaactaccgtcaacattaacttttatgat 245  Q
    ||||| |||||||||||| |||||||| ||||||| |||||    
T  29763053 ggattggaaagagaactatcgtcaacaataactttgatgat 29763013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 16091153 - 16091065
Alignment:
Q  112 gccaaacaagaagtaatacaacaaaattcagaaaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacctgatct 200  Q
    |||||| |||||||||||| |||||| ||| | | ||||| |||  ||||||||| ||||||||| |||||||||||||||||| ||||    
T  16091153 gccaaataagaagtaataccacaaaaatcaaagatacccaacaataaatcaccatcattgtttcttataagacctccaaaacctaatct 16091065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 35946850 - 35947027
Alignment:
Q  5 acatgattaaatcaagggccatcctagaatctgattcaagaataatgttcatgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacatacaa 104  Q
    ||||||||| |||||| | ||||| ||||| |||||||||||||||||||||||| |||||||||||||||| || |||| | ||||||||||||| |||    
T  35946850 acatgattagatcaagagtcatccaagaatatgattcaagaataatgttcatgtgtcccgcatcatacgcaatacaaaggtcttgaaaaatgacatgcaa 35946949  T
Q  105 ttcgaccgccaaacaagaagtaatacaacaaaattcag-aaaaacccagcaaccaatcaccattattgtttctaataa 181  Q
    |||| ||| ||||||||||||||||| ||||||  ||| |||||| || |||||||||| ||||||| ||||| ||||    
T  35946950 ttcggccgtcaaacaagaagtaataccacaaaaaccagaaaaaacgcaacaaccaatcatcattattatttcttataa 35947027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 127
Target Start/End: Complemental strand, 28175228 - 28175138
Alignment:
Q  37 gattcaagaataatgttcatgtggcccgcatcatacgcaacacgaaggccatgaaaaatgacatacaattcgaccgccaaacaagaagtaa 127  Q
    |||||||||||||||||||| |  || ||||||||| ||| ||||||| ||||||||||| |||| |||| ||||| ||| |||| |||||    
T  28175228 gattcaagaataatgttcatattccctgcatcatacacaagacgaaggtcatgaaaaatggcatataatttgaccgtcaagcaagtagtaa 28175138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 28175139 - 28175088
Alignment:
Q  144 aaaacccagcaaccaatcaccattattgtttctaataagacctccaaaacct 195  Q
    |||||||| ||||| ||||||||||||||||||  ||||||||| |||||||    
T  28175139 aaaacccaacaacccatcaccattattgtttcttgtaagacctctaaaacct 28175088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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