View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7178_low_26 (Length: 242)
Name: NF7178_low_26
Description: NF7178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7178_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 3316992 - 3317225
Alignment:
| Q |
8 |
ttgagttcacatcgtatgaagtcgacatagacatgtatgccagccacgatatatacacagacatcaaccatgatataaatttgtaggaaaatgaccaaga |
107 |
Q |
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| T |
3316992 |
ttgagttcacatcgtatgaagtcgacatagacatgtatgccagccacgatatatacacagacatcatccatgatataaatttgtaggaaaatgaccaaga |
3317091 |
T |
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| Q |
108 |
tatttgtgctgctatgtcttctcttaatataaacccaaatcccaatcgatttgatcaaaaatcaaactacacctacctgtaattctcagatcactcaaaa |
207 |
Q |
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| T |
3317092 |
tatttgtgctgctatgtcttctcttaatataaacccaaatcccaatcgatttgatcaaaaatcaaactacaccaacctgtaattctcagatcactcgaaa |
3317191 |
T |
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| Q |
208 |
agtttgttttctttaattttgatgtccatctcat |
241 |
Q |
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| T |
3317192 |
agtttgttttctttaattttgatgtgcatctcat |
3317225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 3313635 - 3313687
Alignment:
| Q |
80 |
atataaatttgtaggaaaatgaccaagatatttgtgctgctatgtcttctctt |
132 |
Q |
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| T |
3313635 |
atataaatttgtaggaaaatgaccaagatatttatgctattatgtcttctctt |
3313687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 3320342 - 3320394
Alignment:
| Q |
80 |
atataaatttgtaggaaaatgaccaagatatttgtgctgctatgtcttctctt |
132 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
3320342 |
atataaatttgtaggaaaatgaccaagatatttatgctattatgtcttctctt |
3320394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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