View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7178_low_3 (Length: 434)
Name: NF7178_low_3
Description: NF7178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7178_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Original strand, 7175702 - 7176111
Alignment:
| Q |
18 |
caaacattattgaagttggattctcccaacctttataaaacaaattacacatgagtgtttgtgtttcattgtcgcttgacaagagaaatgaccaaattga |
117 |
Q |
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| T |
7175702 |
caaacattattgaagttggattctcccaacttttataaaacaaat-acacatgattgtttgtgtttcattgtcgcttgacaagagaaatgaccaaattga |
7175800 |
T |
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| Q |
118 |
tgcattttgttctagttttggacaaatgatcctccacatgtttagcatacctttgaaacaactcatccattatatgactcccaaaatgatattccaacat |
217 |
Q |
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| T |
7175801 |
tgcatttggttctagttttggacaaatgatcctccacatgtttagcatacctttgaaacaactcatccattatatgactcccaaaatgatattccaacat |
7175900 |
T |
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| Q |
218 |
ggactcaaccacagcccttaaggtctttgcaactcgttctccacttgacattgtat---catcactttgcaattctatcccagtatcccaatcaatttca |
314 |
Q |
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| T |
7175901 |
ggactcaaccacagcccttaaggtctttgcaactcgttctccacttgacattgtatcaccaccactttgcaattctatcccagtatcccaatcaatttca |
7176000 |
T |
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| Q |
315 |
taagcttcatgagaatctaccatgaacgacccttccttttcaatctccattttcaattcttcaaaacaaggtgtatagtaaggagcgttaaaagaatcca |
414 |
Q |
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| T |
7176001 |
taagcttcatgagaatctaccatgaacgacccttccttttcaatctccattttcaattcttcaaaacaaggtgtatagtaaggagcgttaaaagaatcca |
7176100 |
T |
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| Q |
415 |
ccgtttcttct |
425 |
Q |
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| T |
7176101 |
ccttttcttct |
7176111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 425
Target Start/End: Original strand, 7187384 - 7187784
Alignment:
| Q |
20 |
aacattattgaagttggattctcccaacctttataaaacaaattacacatgagtgtttgtgtttcattgtcgcttgacaagagaaatgaccaaattgatg |
119 |
Q |
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|||||||||||||||||||||| | || |||| |||||||| || || |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7187384 |
aacattattgaagttggattctgcaaat-tttaaaaaacaaa---catat-agtgtttgtgtttcattgtcgcttgacaagagaaatgatcaaattgatg |
7187478 |
T |
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| Q |
120 |
cattttgttctagttttggacaaatgatcctccacatgtttagcatacctttgaaacaactcatccattatatgactcccaaaatgatattccaacatgg |
219 |
Q |
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| T |
7187479 |
tatttggtccttgtttttgacaaatgatcctccacaaatttggcaaacctttgaaacaattcatccattatatgactcccaaaatgatattccaacatgg |
7187578 |
T |
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| Q |
220 |
actcaaccacagcccttaaggtctttgcaactcgttctccacttgacattgtatcatcactttgcaattctatcccagtatcccaatcaatttcataagc |
319 |
Q |
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| T |
7187579 |
actcaaccacagcccttatggtctttgcaactcgttctccacttatcattgtatcatcactttgcaattctatgccatcatcccaatcaatttcataagc |
7187678 |
T |
|
| Q |
320 |
ttcatgagaatctaccatgaacgacccttccttttcaatctccattttcaattcttcaaaacaaggtgtatagtaaggagcgttaaaagaatccaccgtt |
419 |
Q |
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|||||| |||| |||||||| || ||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||| || |||||| || |
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| T |
7187679 |
ttcatgggaattcaccatgaatgaaccttctttttcaatctccattttcaattcttcaaaacatggtgcatagtaaggagcgttaaatgagtccaccttt |
7187778 |
T |
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| Q |
420 |
tcttct |
425 |
Q |
| |
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|||||| |
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| T |
7187779 |
tcttct |
7187784 |
T |
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