View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7178_low_8 (Length: 380)
Name: NF7178_low_8
Description: NF7178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7178_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 35859752 - 35860121
Alignment:
| Q |
1 |
cgggttggaacaaaaccatgactaggaaggtggtgatggtcaaacttatgagcatgaacatgaccataaggtggccatgaatcaaaaacctgagcatgat |
100 |
Q |
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| T |
35859752 |
cgggttggaacaaaaccatgactaggaaggtggtgatggtcaaacttatgagcatgagcatgaccataaagtggccatggatcaaaaacctgagcatgat |
35859851 |
T |
|
| Q |
101 |
ggaaacgatgagttgtcctttcctgaacaaaaccatgagttggtcctatcggagaacaatgatttgactgttttagaaagccaaggatttaatgagagca |
200 |
Q |
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| T |
35859852 |
ggaaacgatgagttgtcctttcctgaacaaaaccatgagttggtcctatcggagaacaatgatttgactgtttcagaaagccaaggatttaatgagagca |
35859951 |
T |
|
| Q |
201 |
tggacctggctgtggttcagaatcccgaaatgagcattgagtctgccaatgacatggttgtttatcagtcacagtatatgctttcttctacacctcatgt |
300 |
Q |
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| T |
35859952 |
tggacctggctgtggttcagaatcccgaaatgagcatcgagtctgccaatgacatggttgtttatcagtcacagtatatgctttcttctacacctcatgt |
35860051 |
T |
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| Q |
301 |
tgttcaggctcgtacagttgatgtgattccaacttatgaattgtcggtaggccaagaatttcctgatgtc |
370 |
Q |
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| T |
35860052 |
agttcaggctcgtacagttgatgtgattccaacttatgaattgtcggtaggccaagaatttcctaatgtc |
35860121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 120 - 370
Target Start/End: Original strand, 35868055 - 35868302
Alignment:
| Q |
120 |
ttcctgaacaaaaccatgagttggtcctatcggagaacaatgatttgactgttttagaaagccaaggatttaatgagagcatggacctggctgtggttca |
219 |
Q |
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| T |
35868055 |
ttcctggacaaaaccatgatctggtcata---gagaacaataatctaaatgtttttgaaaaccaaggatttgatgagaacatggacctggctgtgattca |
35868151 |
T |
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| Q |
220 |
gaatcccgaaatgagcattgagtctgccaatgacatggttgtttatcagtcacagtatatgctttcttctacacctcatgttgttcaggctcgtacagtt |
319 |
Q |
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| T |
35868152 |
gcaccctgagatgggcgctgattctgacaatgatatgagtatgcaacagtcacagtttatgctttcttctgaatcccatgtaattcaggctcgtacactt |
35868251 |
T |
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| Q |
320 |
gatgtgattccaacttatgaattgtcggtaggccaagaatttcctgatgtc |
370 |
Q |
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| T |
35868252 |
gctgtaagtccaacttatgaactgacagtgggccaagaattccctgatgtc |
35868302 |
T |
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