View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_high_10 (Length: 548)
Name: NF7179_high_10
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 6 - 526
Target Start/End: Complemental strand, 32377244 - 32376724
Alignment:
| Q |
6 |
gtacattattcttagtccacttggtaaggactatgattgtgagatagatgaagaatcacaggttcaagttagagacaaaccctttgagaaaaaatacgca |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32377244 |
gtacattattcttagtccacttggtaaggactatgattgtgagatagatgaagaatcacaggttcaagttagagacaaacccttcgagaaaaaatacgca |
32377145 |
T |
|
| Q |
106 |
tttgtatctaaagatcaacaaggaggaattatagaaaatagaccgaaatggagtggaggaatacttgacatttggaatgatctatcattatcatatctct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32377144 |
tttgtatctaaagatcaacaaggaggaattatagaaaatagaccgaaatggagtggaggaatacttgacatttggaatgatctatcattatcatatctct |
32377045 |
T |
|
| Q |
206 |
cacttttctgccctttttgtgtgtttggatggaacatggagagacttggttttgggaacatgtatgttcatatagctacatttatgctgttttgtatggc |
305 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32377044 |
cacttttctgccctttttgtgcgtttggatggaacatggagagacttggatttgggaacatgtatgttcatatagctacatttatgctgttttgtatggc |
32376945 |
T |
|
| Q |
306 |
tcccttttggatatttgtattggcttctgttagaattgatgatgacaatgttagacaagcactagtagcttttggaatcattcttagtttttgtggttta |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376944 |
tcccttttggatatttgtattggcttctgttagaattgatgatgacaatgttagacaagcactagtagcttttggaatcattcttagtttttgtggttta |
32376845 |
T |
|
| Q |
406 |
ctttatggtggattttggaggattcaaatgagaaagaggttcaatttgcctgcctataaattctgttttggaaaaccatcactttctgattgcacacttt |
505 |
Q |
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| T |
32376844 |
ctttatggtggattttggaggattcaaatgagaaagaggttcaatttgcctgcctatgaattctgttttggaaaaccatcattttctgattgcacacttt |
32376745 |
T |
|
| Q |
506 |
ggttatgctgttgttggtgct |
526 |
Q |
| |
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|||||||||| |||||||||| |
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| T |
32376744 |
ggttatgctgctgttggtgct |
32376724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 6 - 526
Target Start/End: Complemental strand, 32365559 - 32365039
Alignment:
| Q |
6 |
gtacattattcttagtccacttggtaaggactatgattgtgagatagatgaagaatcacaggttcaagttagagacaaaccctttgagaaaaaatacgca |
105 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| ||| |
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| T |
32365559 |
gtacactattcttagtccacttggtaaggactatgattgtgagatagatgaagaatcacaggttcaagttagagagaaaccattcgagaaaaaatatgca |
32365460 |
T |
|
| Q |
106 |
tttgtatctaaagatcaacaaggaggaattatagaaaatagaccgaaatggagtggaggaatacttgacatttggaatgatctatcattatcatatctct |
205 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365459 |
tttgcatctaaagatcaacaaggaggtattatagaaaatagaccgaaatggagtggaggaatacttgacatttggaatgatctatcattatcatatctct |
32365360 |
T |
|
| Q |
206 |
cacttttctgccctttttgtgtgtttggatggaacatggagagacttggttttgggaacatgtatgttcatatagctacatttatgctgttttgtatggc |
305 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365359 |
cacttttctgccctttttgtgcgtttggatggaacatggagagacttggatttgggaacatgtatgttcatatagctacatttatgctgttttgtatggc |
32365260 |
T |
|
| Q |
306 |
tcccttttggatatttgtattggcttctgttagaattgatgatgacaatgttagacaagcactagtagcttttggaatcattcttagtttttgtggttta |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365259 |
tcccttttggatatttgtattggcttctgttagaattgatgatgacaatgttagacaaacactagtagcttttggaatcattcttagtttttgtggttta |
32365160 |
T |
|
| Q |
406 |
ctttatggtggattttggaggattcaaatgagaaagaggttcaatttgcctgcctataaattctgttttggaaaaccatcactttctgattgcacacttt |
505 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32365159 |
ctttatggtggattttggaggattcaaatgagaaagaggttcaatttgcctgcctataaattctgttttggaaaaccatcactttctgattgcacacttt |
32365060 |
T |
|
| Q |
506 |
ggttatgctgttgttggtgct |
526 |
Q |
| |
|
|||||||||| |||||||||| |
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| T |
32365059 |
ggttatgctgctgttggtgct |
32365039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 139 - 526
Target Start/End: Complemental strand, 36122044 - 36121657
Alignment:
| Q |
139 |
gaaaatagaccgaaatggagtggaggaatacttgacatttggaatgatctatcattatcatatctctcacttttctgccctttttgtgtgtttggatgga |
238 |
Q |
| |
|
||||||||||| || |||||||| |||||||||||||||||| | ||| | || | ||||| | ||||||||||| ||||||||| ||||| |||| |
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| T |
36122044 |
gaaaatagaccaaagtggagtggtggaatacttgacatttgggacgatatctctcaagcatatttatcacttttctgtactttttgtgcatttggttgga |
36121945 |
T |
|
| Q |
239 |
acatggagagacttggttttgggaacatgtatgttcatatagctacatttatgctgttttgtatggctcccttttggatatttgtattggcttctgttag |
338 |
Q |
| |
|
| |||||||||||||| ||||| |||||||||||||| || || || |||||||| || |||||||| ||||||||||| || | |||||| |||||| |
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| T |
36121944 |
atatggagagacttggctttggaaacatgtatgttcacattgccacttttatgcttttctgtatggcccccttttggattttcatcttggctgctgttaa |
36121845 |
T |
|
| Q |
339 |
aattgatgatgacaatgttagacaagcactagtagcttttggaatcattcttagtttttgtggtttactttatggtggattttggaggattcaaatgaga |
438 |
Q |
| |
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||||| ||||||| |||||| ||| ||||||| | ||| || |||| |||||| ||| | || |||||||| ||||||||||| ||||||||| |
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| T |
36121844 |
tattgaggatgacactgttaggcaatgtctagtaggtgctgggattgttctatgttttttcggtatgctctatggtggtttttggaggatccaaatgaga |
36121745 |
T |
|
| Q |
439 |
aagaggttcaatttgcctgcctataaattctgttttggaaaaccatcactttctgattgcacactttggttatgctgttgttggtgct |
526 |
Q |
| |
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||||||| ||||||||| | ||| | |||||||| || || || | |||| ||||||| ||||||| ||| |||||||||||||| |
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| T |
36121744 |
aagaggtataatttgcctacttatgacttctgtttcggcaagcctgcggtttcggattgcatactttggctattctgttgttggtgct |
36121657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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