View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7179_high_11 (Length: 538)

Name: NF7179_high_11
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7179_high_11
NF7179_high_11
[»] chr1 (21 HSPs)
chr1 (1-522)||(2499563-2500090)
chr1 (1-126)||(32404655-32404780)
chr1 (1-89)||(9002380-9002468)
chr1 (1-89)||(16272987-16273075)
chr1 (13-120)||(2544639-2544745)
chr1 (1-84)||(48431577-48431660)
chr1 (1-110)||(8796237-8796346)
chr1 (3-51)||(52633377-52633425)
chr1 (11-66)||(19908228-19908283)
chr1 (1-120)||(35828685-35828804)
chr1 (13-123)||(43423759-43423869)
chr1 (146-213)||(43375638-43375706)
chr1 (17-71)||(29807910-29807964)
chr1 (21-126)||(3818985-3819090)
chr1 (13-126)||(5338764-5338877)
chr1 (15-120)||(13827705-13827810)
chr1 (164-213)||(50846755-50846804)
chr1 (18-74)||(43375768-43375823)
chr1 (21-81)||(46388424-46388484)
chr1 (21-81)||(46394868-46394928)
chr1 (62-110)||(50846654-50846702)
[»] chr7 (11 HSPs)
chr7 (13-213)||(28627973-28628175)
chr7 (1-126)||(47848702-47848827)
chr7 (1-73)||(23087286-23087358)
chr7 (13-120)||(18605281-18605388)
chr7 (13-120)||(18637602-18637709)
chr7 (13-120)||(18651036-18651143)
chr7 (1-72)||(35713723-35713794)
chr7 (13-51)||(9797908-9797946)
chr7 (13-74)||(6420671-6420732)
chr7 (1-126)||(38135342-38135466)
chr7 (13-73)||(48202884-48202944)
[»] chr6 (6 HSPs)
chr6 (1-126)||(25493979-25494104)
chr6 (3-126)||(9593837-9593958)
chr6 (13-119)||(7150457-7150563)
chr6 (13-74)||(34677-34738)
chr6 (27-84)||(579472-579529)
chr6 (3-74)||(24665840-24665912)
[»] chr8 (8 HSPs)
chr8 (3-213)||(32930991-32931202)
chr8 (1-120)||(41971913-41972032)
chr8 (21-213)||(29520698-29520891)
chr8 (55-120)||(29700358-29700423)
chr8 (55-126)||(38178389-38178460)
chr8 (4-50)||(9905086-9905132)
chr8 (13-119)||(16917224-16917329)
chr8 (1-73)||(2518574-2518646)
[»] chr5 (7 HSPs)
chr5 (1-79)||(23979974-23980052)
chr5 (1-108)||(7359407-7359513)
chr5 (1-98)||(21093780-21093877)
chr5 (13-74)||(9235104-9235165)
chr5 (15-120)||(21952399-21952504)
chr5 (11-119)||(33157967-33158075)
chr5 (13-73)||(42199326-42199386)
[»] chr2 (10 HSPs)
chr2 (3-120)||(43752082-43752199)
chr2 (13-213)||(12141584-12141786)
chr2 (1-126)||(13592427-13592551)
chr2 (33-126)||(45436902-45436995)
chr2 (27-84)||(45077809-45077866)
chr2 (14-73)||(3305962-3306021)
chr2 (13-120)||(43260444-43260548)
chr2 (13-74)||(43832138-43832199)
chr2 (13-73)||(13240927-13240987)
chr2 (16-120)||(38434995-38435099)
[»] chr4 (6 HSPs)
chr4 (13-84)||(28497529-28497600)
chr4 (16-120)||(34233159-34233263)
chr4 (4-71)||(17666227-17666294)
chr4 (1-120)||(29398846-29398965)
chr4 (1-51)||(30621408-30621458)
chr4 (13-73)||(31339576-31339636)
[»] chr3 (5 HSPs)
chr3 (29-110)||(42026681-42026762)
chr3 (1-212)||(45289132-45289345)
chr3 (16-117)||(50249430-50249531)
chr3 (16-50)||(52679051-52679085)
chr3 (1-120)||(42510151-42510268)


Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 2500090 - 2499563
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgta------gagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcac 94  Q
    ||||||||||||||||||||||||| ||| ||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2500090 tggaaaatatgtttaggtgatttgggcatatatagagagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcac 2499991  T
Q  95 tagatgtagaggaagatctagaaaaattataatcgaaacaactacgaaatattagagattaataattggaccaaaataaagtgcatgatagaacattatg 194  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2499990 tagatgtagaggaagacctagaaaaactataatcgaaacaattacgaaatattagagattaataattagaccaaaataaagtgcatgatagaacattatg 2499891  T
Q  195 tcataatttgatcgatgtactcgactcacttggtggactaagattaggttgttgttgtatccatcctcgatatctaaaaaagtgattatatggttttttg 294  Q
     ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2499890 gcataatttgatcgatgtactcgattcacttggtggactaaaattaggttgttgttgtatccatcctcgatatctaaaaaagtgattatatggttttttg 2499791  T
Q  295 atttggtgaactctatgttgtagtctatttgactcctattcaagattaccatgaacccaacaaaagcaaacgacattctccaagttcatcaaaattggta 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2499790 atttggtgaactctatgttgtagtctatttgactcctattcaagattaccatgaacccaacaaaagcaaacgacattctccaagttcatcaaaattggta 2499691  T
Q  395 gtcacattcagtattcattcatcagtcgtcaatctattttggatcagttgattgttagctaatgtttatttagctcataggtaaatacttccaccgcaat 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2499690 gtcacattcagtattcattcatcagtcgtcaatctattttggatcaggtgattgttagctaatgtttatttagctcataggtaaatacttccaccgcaat 2499591  T
Q  495 caagtggtcaatacataatccaatcaac 522  Q
    |||||||||||| ||| |||||||||||    
T  2499590 caagtggtcaatgcatgatccaatcaac 2499563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 32404780 - 32404655
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatg 100  Q
    ||||||||| | ||||||| |||||| |||||||||||| || ||||||||  ||||||| |||||||||  || | ||||||| |||| |||| ||| |    
T  32404780 tggaaaataggcttaggtggtttggatatgtagagagaagacctgtagattctatagtaaggagagtagagaagatggaggatagtcatatcacaagagg 32404681  T
Q  101 tagaggaagatctagaaaaattataa 126  Q
    |||||||||| ||| ||||| |||||    
T  32404680 tagaggaagacctacaaaaactataa 32404655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 9002380 - 9002468
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcat 89  Q
    ||||||||| ||||||||  |||||||||||||||| ||||||||||||||   ||||||  |||||||||||  ||||||||||||||    
T  9002380 tggaaaataggtttaggtagtttggacatgtagagaaaaaacttgtagattttgtagtaagaagagtagatcaaatagaggataatcat 9002468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 16273075 - 16272987
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcat 89  Q
    ||||||||| ||||||||| |||| |||| |||||||||||||||||||||  |||||||  ||||| |||||  ||||||||||||||    
T  16273075 tggaaaataggtttaggtggtttgtacatttagagagaaaacttgtagattctatagtaagaagagtggatcaaatagaggataatcat 16272987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 2544639 - 2544745
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatc 112  Q
    ||||||| ||||||||||||||||||| || | ||||||  ||||||| ||||||||||||| | ||||||| |||   ||||||| ||||||||||| |    
T  2544639 ttaggtggtttggacatgtagagagaagacctatagattctatagtaaggagagtagatcagatggaggatagtca-aacactagaggtagaggaagacc 2544737  T
Q  113 tagaaaaa 120  Q
    ||||||||    
T  2544738 tagaaaaa 2544745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 48431660 - 48431577
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggata 84  Q
    ||||||||| | ||||||| ||||| ||||||||||||| |||||||||||   ||||||||||||| |||||| | |||||||    
T  48431660 tggaaaataggcttaggtggtttgggcatgtagagagaagacttgtagattttgtagtaaagagagttgatcagatggaggata 48431577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 8796237 - 8796346
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatg 100  Q
    ||||||||| ||||||||| |||||||||||||||| || || ||||| || | |||||| ||||||| ||| | | ||||||| |||  |||||||| |    
T  8796237 tggaaaataggtttaggtggtttggacatgtagagataagacatgtaggtttcgtagtaaggagagtaaatcggatggaggatagtcagatcactagagg 8796336  T
Q  101 tagaggaaga 110  Q
     |||||||||    
T  8796337 cagaggaaga 8796346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 52633425 - 52633377
Alignment:
Q  3 gaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagatt 51  Q
    ||||||| ||||| ||| |||||||||||||||||||||||||||||||    
T  52633425 gaaaataagtttaagtgctttggacatgtagagagaaaacttgtagatt 52633377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 19908283 - 19908228
Alignment:
Q  11 gtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagag 66  Q
    ||||||||||||||| |||||||||||||||| |||||||||  |||||| |||||    
T  19908283 gtttaggtgatttgggcatgtagagagaaaacctgtagattatgtagtaaggagag 19908228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 35828804 - 35828685
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatg 100  Q
    ||||||||| | ||||||| ||||||| ||||||||||| || | |||||||  |||||| ||||| ||||||  | ||||||| |||  || ||||| |    
T  35828804 tggaaaatagggttaggtggtttggacgtgtagagagaagacctatagattatgtagtaaggagagaagatcatatggaggatagtcagatccctagagg 35828705  T
Q  101 tagaggaagatctagaaaaa 120  Q
     |||||||||||| ||||||    
T  35828704 cagaggaagatctggaaaaa 35828685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 43423759 - 43423869
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatc 112  Q
    ||||||| ||||| ||||||||||||| ||||||||||||  ||||||  ||||||||  || | ||   || |||  |||||||| ||||||||||| |    
T  43423759 ttaggtggtttggccatgtagagagaagacttgtagattatgtagtaagtagagtagactagatggatagtagtcaaatcactagaggtagaggaagacc 43423858  T
Q  113 tagaaaaatta 123  Q
    |||||||||||    
T  43423859 tagaaaaatta 43423869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 43375706 - 43375638
Alignment:
Q  146 ttagagattaataa-ttggaccaaaataaagtgcatgatagaacattatgtcataatttgatcgatgta 213  Q
    |||||||||||| | ||||||| |||||  || ||||||||||||||||| |||||||||||| |||||    
T  43375706 ttagagattaatgagttggaccgaaatatggttcatgatagaacattatgacataatttgatccatgta 43375638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 29807910 - 29807964
Alignment:
Q  17 gtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagat 71  Q
    ||||||||| ||||||||||||| || ||| |||||  |||||||||||||||||    
T  29807910 gtgatttgggcatgtagagagaagacatgtggattatgtagtaaagagagtagat 29807964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 3819090 - 3818985
Alignment:
Q  21 tttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatctagaaaaa 120  Q
    ||||| |||||||| |||| |||||| ||||   |||||||||||||||||||| | |||| ||||||   |||||||   ||||||||| || ||||||    
T  3819090 tttgggcatgtagaaagaagacttgtggattctctagtaaagagagtagatcagatggagggtaatcaaaccactagagaaagaggaagaccttgaaaaa 3818991  T
Q  121 ttataa 126  Q
     |||||    
T  3818990 ctataa 3818985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 5338764 - 5338877
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatc 112  Q
    ||||||| ||||| |||| |||||||| || |||||||    |||||| ||||||||||||| | ||||||| |||  |||||||| | ||| | ||| |    
T  5338764 ttaggtggtttgggcatgcagagagaagacctgtagatgctttagtaaggagagtagatcagatggaggatattcagatcactagaggcagaagtagacc 5338863  T
Q  113 tagaaaaattataa 126  Q
    |||||||| |||||    
T  5338864 tagaaaaactataa 5338877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 13827810 - 13827705
Alignment:
Q  15 aggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatcta 114  Q
    ||||| ||||||||||||||||||| |  ||||||||   |||||| ||||||||||||  | ||  ||| |||  |||||||| | ||||||||| |||    
T  13827810 aggtggtttggacatgtagagagaagaagtgtagattctgtagtaaggagagtagatcatatggaacatagtcagatcactagaggcagaggaagaccta 13827711  T
Q  115 gaaaaa 120  Q
    ||||||    
T  13827710 gaaaaa 13827705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 50846755 - 50846804
Alignment:
Q  164 accaaaataaagtgcatgatagaacattatgtcataatttgatcgatgta 213  Q
    ||||||||| |||  |||||||||||||||| |||||||||||| |||||    
T  50846755 accaaaatatagtttatgatagaacattatggcataatttgatctatgta 50846804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 43375823 - 43375768
Alignment:
Q  18 tgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcag 74  Q
    |||||||| ||||||||||||| || | |||||||  ||||||||||||||||||||    
T  43375823 tgatttgg-catgtagagagaagacctatagattatgtagtaaagagagtagatcag 43375768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 46388424 - 46388484
Alignment:
Q  21 tttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagagg 81  Q
    |||| |||||||||||||| |||||||||||   |||||| |||||||| |||||| ||||    
T  46388424 tttgcacatgtagagagaagacttgtagattctgtagtaaggagagtagctcagttggagg 46388484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 46394868 - 46394928
Alignment:
Q  21 tttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagagg 81  Q
    |||| |||||||||||||| |||||||||||   |||||| |||||||| |||||| ||||    
T  46394868 tttgcacatgtagagagaagacttgtagattctgtagtaaggagagtagctcagttggagg 46394928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 50846654 - 50846702
Alignment:
Q  62 gagagtagatcagttagaggataatcatgtcactagatgtagaggaaga 110  Q
    ||||||||||||| | |||||||||||| |||||||| | |||||||||    
T  50846654 gagagtagatcagatggaggataatcatatcactagaggcagaggaaga 50846702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 28628175 - 28627973
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatc 112  Q
    ||||||| ||||| |||||| ||||||||| |||||||||  |||||| ||||||||||| | | ||||||| |||  |||| ||| ||||||||||| |    
T  28628175 ttaggtggtttgggcatgtaaagagaaaacctgtagattatgtagtaaggagagtagatccgatggaggatagtcaaatcacaagaggtagaggaagacc 28628076  T
Q  113 tagaaaaattataatcgaaacaactacgaaata-ttagagattaat-aattggaccaaaataaagtgcatgatagaacattatgtcataatttgatcgat 210  Q
    |||||||| |||||  ||||| | || |||| | |||||||||||| | |||||   ||||   ||  |||||||||||||||| | |||||||||| ||    
T  28628075 tagaaaaactataagagaaactattaggaaagatttagagattaatgagttggatgcaaatgtggtttatgatagaacattatggcgtaatttgatccat 28627976  T
Q  211 gta 213  Q
    |||    
T  28627975 gta 28627973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 47848702 - 47848827
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatg 100  Q
    ||||||||| | ||||||| ||||| ||||| ||||||| ||||||| |||   || ||| ||||||||||||| | ||||||| ||   |||||||| |    
T  47848702 tggaaaataggcttaggtggtttgggcatgtcgagagaagacttgtaaattctgtactaaggagagtagatcagatggaggatagtctgatcactagagg 47848801  T
Q  101 tagaggaagatctagaaaaattataa 126  Q
     ||||||||| ||||||||| |||||    
T  47848802 cagaggaagaactagaaaaactataa 47848827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 23087358 - 23087286
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatca 73  Q
    ||||||||  ||||||||||||||||||||||||||||||| ||||| ||||  ||||| | ||| |||||||    
T  23087358 tggaaaattggtttaggtgatttggacatgtagagagaaaatttgtaaattatgtagtacaaagaatagatca 23087286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 18605388 - 18605281
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatc 112  Q
    ||||||| ||||  ||||||||||||| || ||||||||| ||||| | |||| |||||||| | ||||| | |||  ||||||||||||  || ||| |    
T  18605388 ttaggtggtttgagcatgtagagagaagacatgtagattatatagttaggagattagatcagatcgaggagagtcaaatcactagatgtatgggtagacc 18605289  T
Q  113 tagaaaaa 120  Q
    ||||||||    
T  18605288 tagaaaaa 18605281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 18637602 - 18637709
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatc 112  Q
    ||||||| ||||  ||||||||||||| || ||||||||| ||||| | |||| |||||||| | ||||| | |||  ||||||||||||  || ||| |    
T  18637602 ttaggtggtttgagcatgtagagagaagacatgtagattatatagttaggagattagatcagatcgaggagagtcaaatcactagatgtatgggtagacc 18637701  T
Q  113 tagaaaaa 120  Q
    ||||||||    
T  18637702 tagaaaaa 18637709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 18651036 - 18651143
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatc 112  Q
    ||||||| ||||  ||||||||||||| || ||||||||| ||||| | |||| |||||||| | ||||| | |||  ||||||||||||  || ||| |    
T  18651036 ttaggtggtttgagcatgtagagagaagacatgtagattatatagttaggagattagatcagatcgaggagagtcaaatcactagatgtatgggtagacc 18651135  T
Q  113 tagaaaaa 120  Q
    ||||||||    
T  18651136 tagaaaaa 18651143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 35713723 - 35713794
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatc 72  Q
    ||||||||| | ||||||| ||||| ||||||||||||| ||||||| |||   |||||| |||||||||||    
T  35713723 tggaaaataggcttaggtggtttgggcatgtagagagaagacttgtacattttgtagtaaggagagtagatc 35713794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 9797946 - 9797908
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagatt 51  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  9797946 ttaggtggtttggacatgtagagagaagacttgtagatt 9797908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 6420732 - 6420671
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcag 74  Q
    ||||||| ||||| ||||||||||||| ||||||||||    |||||| |||||||||||||    
T  6420732 ttaggtggtttgggcatgtagagagaagacttgtagatactgtagtaaggagagtagatcag 6420671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 38135466 - 38135342
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatg 100  Q
    ||||||||| | ||||||| |||||||||||||| |||| ||  |||||||   |||||| |||| |||||||| | ||||||| |||  ||| |||| |    
T  38135466 tggaaaataggcttaggtggtttggacatgtagacagaagaccagtagattttgtagtaaggaga-tagatcagatggaggatagtcagatcattagagg 38135368  T
Q  101 tagaggaagatctagaaaaattataa 126  Q
     ||| ||||| ||||||||| |||||    
T  38135367 cagatgaagacctagaaaaagtataa 38135342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 48202944 - 48202884
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatca 73  Q
    ||||||| ||||  ||||||||||||| |||||||||||   |||||| ||||||||||||    
T  48202944 ttaggtggtttgcgcatgtagagagaagacttgtagattctgtagtaaggagagtagatca 48202884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 25494104 - 25493979
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatg 100  Q
    ||||||||| ||||||||| |||||||||||| ||||||||| ||||||||  ||||||||  ||||||||||  ||||||||| |||| | || ||| |    
T  25494104 tggaaaataagtttaggtggtttggacatgtatagagaaaacatgtagattctatagtaaaacgagtagatcaaatagaggatagtcatattacaagagg 25494005  T
Q  101 tagaggaagatctagaaaaattataa 126  Q
    || | ||||| |||||| || |||||    
T  25494004 tacaagaagacctagaagaactataa 25493979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 9593958 - 9593837
Alignment:
Q  3 gaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgta 102  Q
    ||||||| | ||||||| ||||| ||||||||||||| || |||||||    ||||||  |||||||||||| | ||||| | |||  |||  ||| |||    
T  9593958 gaaaataggcttaggtggtttgggcatgtagagagaagacatgtagatgctgtagtaagaagagtagatcagatggaggagagtcaaatca--agaggta 9593861  T
Q  103 gaggaagatctagaaaaattataa 126  Q
    |||||||| |||||||||||||||    
T  9593860 gaggaagacctagaaaaattataa 9593837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 7150563 - 7150457
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatc 112  Q
    ||||||| ||||| ||||  ||||||| |||||||||||| ||||||| ||||||| | ||| |||| | ||||||   | ||||| | ||||||||| |    
T  7150563 ttaggtggtttgggcatggggagagaagacttgtagattatatagtaaggagagtacaacagatagatggtaatcaaaccgctagaggcagaggaagacc 7150464  T
Q  113 tagaaaa 119  Q
    |||||||    
T  7150463 tagaaaa 7150457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 34738 - 34677
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcag 74  Q
    |||||||  |||| |||||||||||||| |||| ||||||  |||||| |||||||||||||    
T  34738 ttaggtgggttgggcatgtagagagaaagcttggagattatgtagtaacgagagtagatcag 34677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 579472 - 579529
Alignment:
Q  27 catgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggata 84  Q
    |||||||||||||  ||||||||||| ||||||| |||||| |||||| | |||||||    
T  579472 catgtagagagaaggcttgtagattatatagtaaggagagttgatcagatggaggata 579529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 24665840 - 24665912
Alignment:
Q  3 gaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattaca-tagtaaagagagtagatcag 74  Q
    ||||||| | ||||||| ||||||||||||||||||| || ||||||||    |||||| |||||||||||||    
T  24665840 gaaaataggcttaggtggtttggacatgtagagagaagacctgtagatttttgtagtaaggagagtagatcag 24665912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 32930991 - 32931202
Alignment:
Q  3 gaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgta 102  Q
    ||||| ||| |||||||||||||||||||||| ||||||  | ||||||   |||||| |||| |||||||| | ||||||| |||| |||||||| | |    
T  32930991 gaaaacatgcttaggtgatttggacatgtagaaagaaaatctatagattctgtagtaaggagactagatcagatggaggatagtcatatcactagaggca 32931090  T
Q  103 gaggaagatctagaaaaattataatcgaaacaactacgaaata-ttagagattaat-aattggaccaaaataaagtgcatgatagaacattatgtcataa 200  Q
    |||||||| ||| ||||| ||| |  ||||| | || |||| | || || |||||| | ||||| | |||||  ||| |||||||||||||||| |||||    
T  32931091 gaggaagacctaaaaaaactatcagagaaactattaggaaagattttgaaattaatgagttgga-cgaaatatggtgtatgatagaacattatggcataa 32931189  T
Q  201 tttgatcgatgta 213  Q
    ||||||| |||||    
T  32931190 tttgatccatgta 32931202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 41972032 - 41971913
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatg 100  Q
    ||||||||| ||||||||| ||||||||||||||||||| || ||||||||   ||| || ||||||||||||| | || |||| |||  |||||||| |    
T  41972032 tggaaaataagtttaggtggtttggacatgtagagagaagacgtgtagattttctagcaaggagagtagatcaggtggacgatagtcaaatcactagagg 41971933  T
Q  101 tagaggaagatctagaaaaa 120  Q
     | ||||| | |||||||||    
T  41971932 caaaggaaaacctagaaaaa 41971913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 29520698 - 29520891
Alignment:
Q  21 tttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatctagaaaaa 120  Q
    ||||| ||||||||||||| |||||||||||   |||||| ||||||||||||| | ||||||| |||  |||| ||| ||||||||||  |||||||||    
T  29520698 tttgggcatgtagagagaagacttgtagattttgtagtaaggagagtagatcagatggaggatagtcaaatcacaagaggtagaggaag-cctagaaaaa 29520796  T
Q  121 ttataatcgaaacaactacgaaata-ttagagattaat-aattggaccaaaataaagtgcatgatagaacattatgtcataatttgatcgatgta 213  Q
     |||||  |||||   || |||  | |||||||||||| | ||||| | |||||  ||  |||||||||||||||| | |||||||||| |||||    
T  29520797 ctataagagaaactgttaggaacgatttagagattaatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgta 29520891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 29700358 - 29700423
Alignment:
Q  55 tagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatctagaaaaa 120  Q
    |||||| |||||||||| || | ||||||| |||| |||||||| ||||||||||| |||||||||    
T  29700358 tagtaaggagagtagattagatggaggatagtcatatcactagaggtagaggaagacctagaaaaa 29700423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 38178460 - 38178389
Alignment:
Q  55 tagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatctagaaaaattataa 126  Q
    |||||| ||||||||||||| | ||||||| |||  || ||||| ||||||||||| ||||||||| |||||    
T  38178460 tagtaaggagagtagatcagatggaggatagtcaaatcgctagaggtagaggaagacctagaaaaactataa 38178389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 9905132 - 9905086
Alignment:
Q  4 aaaatatgtttaggtgatttggacatgtagagagaaaacttgtagat 50  Q
    |||||| | ||||||| ||||||||||||||||||| ||||||||||    
T  9905132 aaaataggcttaggtggtttggacatgtagagagaagacttgtagat 9905086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 16917224 - 16917329
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatc 112  Q
    ||||||| ||||| |||||| ||||||  ||||||||||   |||||| ||||||||||||| | ||||||| |||  |||||| | ||||| ||||| |    
T  16917224 ttaggtggtttgggcatgtaaagagaaggcttgtagatttg-tagtaaggagagtagatcagattgaggatagtcaaatcactacaggtagaagaagacc 16917322  T
Q  113 tagaaaa 119  Q
    |||||||    
T  16917323 tagaaaa 16917329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 2518646 - 2518574
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatca 73  Q
    ||||||||| ||||||||| ||||   |||||||||||| |||||||||||   ||| |||||||||| ||||    
T  2518646 tggaaaataggtttaggtggtttgattatgtagagagaagacttgtagattttgtaggaaagagagtatatca 2518574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 23979974 - 23980052
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttaga 79  Q
    ||||||||| ||||||||| |||||||||||||||||||| | ||||||||  |||||||  |||||||||||| ||||    
T  23979974 tggaaaataggtttaggtggtttggacatgtagagagaaaccctgtagattctatagtaagaagagtagatcagataga 23980052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 7359513 - 7359407
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatg 100  Q
    ||||||||| ||||||||| ||||| ||||||||||||| |  ||||||||   |||||| ||||||||||||| | ||||||| |||| |||||||| |    
T  7359513 tggaaaataggtttaggtggtttgg-catgtagagagaagatatgtagattctgtagtaaggagagtagatcagatggaggatagtcatatcactagagg 7359415  T
Q  101 tagaggaa 108  Q
     |||||||    
T  7359414 cagaggaa 7359407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 21093780 - 21093877
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactaga 98  Q
    ||||||||| | ||||||  ||||| ||||||||| ||| ||||| |||||   |||||||||||||||||||| | ||||||| |||  ||||||||    
T  21093780 tggaaaataggcttaggtagtttgggcatgtagagggaagacttggagattttgtagtaaagagagtagatcagatggaggatagtcagatcactaga 21093877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 9235104 - 9235165
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcag 74  Q
    ||||||| ||||  ||||||||||||| |||||||||||   |||||| |||||||||||||    
T  9235104 ttaggtgttttgagcatgtagagagaagacttgtagattctgtagtaacgagagtagatcag 9235165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 21952399 - 21952504
Alignment:
Q  15 aggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatcta 114  Q
    ||||| |||||||||||||||||||  | ||| ||||  ||||||| |||| |||||||| | ||||  | |||  |||||||| |||| |||||| |||    
T  21952399 aggtggtttggacatgtagagagaagtcctgtggattctatagtaaggagaatagatcagatggaggggagtcaaatcactagaggtaggggaagaccta 21952498  T
Q  115 gaaaaa 120  Q
    ||||||    
T  21952499 gaaaaa 21952504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 33158075 - 33157967
Alignment:
Q  11 gtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaaga 110  Q
    ||||||||| |||| || |||||||||||||| ||||||||   ||||||  |||||||||||  || | |||| |||||| || ||| ||| | |||||    
T  33158075 gtttaggtggtttgaacgtgtagagagaaaacatgtagattctgtagtaagaagagtagatcaaatataagatagtcatgttacaagaggtataagaaga 33157976  T
Q  111 tctagaaaa 119  Q
     ||||||||    
T  33157975 cctagaaaa 33157967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 42199326 - 42199386
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatca 73  Q
    ||||||| ||||| ||||||||||||| || ||||||||   |||||| ||||||||||||    
T  42199326 ttaggtggtttgggcatgtagagagaagacatgtagattctgtagtaaggagagtagatca 42199386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 43752199 - 43752082
Alignment:
Q  3 gaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgta 102  Q
    ||||||| | ||||||||||||||||||||||||||| || | |||||||  |||||  ||||||||||||| | ||||||| |||  ||||| || | |    
T  43752199 gaaaataggcttaggtgatttggacatgtagagagaagacctatagattatgtagtagggagagtagatcagatggaggatactcagatcactggaggca 43752100  T
Q  103 gaggaagatctagaaaaa 120  Q
     ||||||| |||||||||    
T  43752099 taggaagacctagaaaaa 43752082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 12141584 - 12141786
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatc 112  Q
    ||||||| ||||| || ||||| |||| || ||||||||   |||||| ||||||||||||| | ||||||| |||  | || ||| ||||||||||| |    
T  12141584 ttaggtggtttgggcacgtagaaagaagacctgtagattctctagtaaggagagtagatcagattgaggatagtcaaattacaagaggtagaggaagacc 12141683  T
Q  113 tagaaaaattataatcgaaacaactacgaaata-ttagagattaat-aattggaccaaaataaagtgcatgatagaacattatgtcataatttgatcgat 210  Q
    |||||||  ||||   ||||| | || |||| | |||||||||||| | ||||| | |||||  ||  |||||||||||||||| ||| |||||||||||    
T  12141684 tagaaaagctataggagaaactattaggaaagacttagagattaatgacttggatccaaatatggtatatgatagaacattatggcatgatttgatcgat 12141783  T
Q  211 gta 213  Q
    |||    
T  12141784 gta 12141786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 13592551 - 13592427
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatg 100  Q
    ||||||||| ||||||||| |||||||||||| ||||||||| |||||||   |||||||  |||||||||||  ||||||||| |||| |  | ||| |    
T  13592551 tggaaaata-gtttaggtggtttggacatgtatagagaaaacatgtagatattatagtaagaagagtagatcaaatagaggatagtcatatttcaagagg 13592453  T
Q  101 tagaggaagatctagaaaaattataa 126  Q
    || ||||||| |||||| || |||||    
T  13592452 tataggaagacctagaagaactataa 13592427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 45436902 - 45436995
Alignment:
Q  33 gagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatctagaaaaattataa 126  Q
    ||||||| || ||||||||   || ||| ||||||||||||||| |||||||||||  |||||||| | ||||||||| ||| |||||||||||    
T  45436902 gagagaagacatgtagattttgtattaaggagagtagatcagtttgaggataatcagatcactagaggcagaggaagacctataaaaattataa 45436995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 45077809 - 45077866
Alignment:
Q  27 catgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggata 84  Q
    |||||||||||||||||||||||||   |||||| ||||||||||||| | |||||||    
T  45077809 catgtagagagaaaacttgtagattttgtagtaaggagagtagatcagatggaggata 45077866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 3306021 - 3305962
Alignment:
Q  14 taggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatca 73  Q
    |||||| ||||| ||| ||||||||| ||||||| ||||  |||||||||||||||||||    
T  3306021 taggtggtttgggcatttagagagaagacttgtaaattatgtagtaaagagagtagatca 3305962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 43260444 - 43260548
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatc 112  Q
    ||||||| ||||| |||||  ||| || |||||||||||  ||||||| ||||||||||||| | |||| || |||  ||||||||   ||||||| |||    
T  43260444 ttaggtggtttgggcatgtgaagaaaagacttgtagattctatagtaaggagagtagatcagatggagggtagtcaaatcactaga---agaggaaaatc 43260540  T
Q  113 tagaaaaa 120  Q
    ||||||||    
T  43260541 tagaaaaa 43260548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 43832138 - 43832199
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcag 74  Q
    ||||||||||||| |||||| ||||||||| ||| |||||  |||| | |||||||||||||    
T  43832138 ttaggtgatttgggcatgtacagagaaaacatgtggattatgtagttaggagagtagatcag 43832199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 13240987 - 13240927
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatca 73  Q
    ||||||| ||||| ||||||||||||| || ||||||||   |||||| ||||||||||||    
T  13240987 ttaggtggtttgggcatgtagagagaagacatgtagattctttagtaaggagagtagatca 13240927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 38434995 - 38435099
Alignment:
Q  16 ggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatctag 115  Q
    |||| ||||| |||||| |||||| ||||||||||    |||||| ||||||||||||  | ||||||| |||  |||||||| | ||||| ||| ||||    
T  38434995 ggtggtttgggcatgtaaagagaagacttgtagatgctttagtaaggagagtagatcatatggaggatagtcagatcactagaggcagaggtagacctag 38435094  T
Q  116 aaaaa 120  Q
    |||||    
T  38435095 aaaaa 38435099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 28497529 - 28497600
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggata 84  Q
    ||||||| ||||| ||||||||||||| ||||||||||||  |||||| ||||||||||||| | |||||||    
T  28497529 ttaggtggtttgggcatgtagagagaagacttgtagattatgtagtaaggagagtagatcagatggaggata 28497600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 34233263 - 34233159
Alignment:
Q  16 ggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatctag 115  Q
    |||| |||||||||||||||||| ||| |||||||||  |||||| |||||||||| || | ||||||  |||  |||||||| | ||||||| | ||||    
T  34233263 ggtggtttggacatgtagagagagaacatgtagattatgtagtaaggagagtagatgagatggaggatcgtcagatcactagaggcagaggaaaacctag 34233164  T
Q  116 aaaaa 120  Q
    |||||    
T  34233163 aaaaa 34233159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 17666294 - 17666227
Alignment:
Q  4 aaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagat 71  Q
    |||||| ||||||||| ||||||||||||||| |||||| |||||||||  ||||||  |||||||||    
T  17666294 aaaataggtttaggtggtttggacatgtagagggaaaacatgtagattatgtagtaagaagagtagat 17666227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 29398846 - 29398965
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatg 100  Q
    ||||||||||| ||| ||| ||||| ||||||||||||| || | ||||||   |||| | ||||||||| | | ||||||||| |||  |||||||| |    
T  29398846 tggaaaatatgcttatgtggtttgggcatgtagagagaagacctatagattctgtagtgaggagagtagaccggatagaggatagtcaaatcactagagg 29398945  T
Q  101 tagaggaagatctagaaaaa 120  Q
     ||||||||| |||||||||    
T  29398946 cagaggaagacctagaaaaa 29398965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30621458 - 30621408
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagatt 51  Q
    ||||||||| ||||||||||||||| || |||||||||| | |||||||||    
T  30621458 tggaaaataggtttaggtgatttgggcacgtagagagaagatttgtagatt 30621408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 31339576 - 31339636
Alignment:
Q  13 ttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatca 73  Q
    ||||||| ||||  ||||||||||||| ||||||||||||  |||||| || |||||||||    
T  31339576 ttaggtggtttgagcatgtagagagaagacttgtagattatgtagtaaggatagtagatca 31339636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 42026762 - 42026681
Alignment:
Q  29 tgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaaga 110  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||   |||||||||||  || ||||| | |||||||||    
T  42026762 tgtagagagaaaacttgtagattatttagtaaggagagtagatcagacggaggataatcacatccctagaggcagaggaaga 42026681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 45289345 - 45289132
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatg 100  Q
    ||||||||| | ||||||| ||||| || |||||||||| |||||||||||   ||||||  |||||||||||| | ||||||| | |  | || |||      
T  45289345 tggaaaataggcttaggtggtttgggcacgtagagagaacacttgtagattttgtagtaagaagagtagatcagatggaggatagttagattacaagaga 45289246  T
Q  101 tagaggaagatctagaaaaattataatcgaaacaactacgaaata-ttagagattaat-aattggaccaaaataaagtgcatgatagaacattatgtcat 198  Q
    ||||||||||||||  |||| |||||  ||||| | || |||| | |||||||||||| | ||||| | |||||  ||  |||||||||||||||  |||    
T  45289245 tagaggaagatctatgaaaactataagagaaactattaggaaagatttagagattaatgagttggatccaaatatggtttatgatagaacattatagcat 45289146  T
Q  199 aatttgatcgatgt 212  Q
    ||||||||| ||||    
T  45289145 aatttgatccatgt 45289132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 50249430 - 50249531
Alignment:
Q  16 ggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatgtagaggaagatctag 115  Q
    |||| ||||| ||||||||| ||| || ||||||||   |||||| ||||||||||||| | | ||||| |||| |||| ||| ||||||||||| ||||    
T  50249430 ggtggtttgggcatgtagagtgaagacatgtagattctttagtaaggagagtagatcagatgggggatagtcatatcaccagaggtagaggaagacctag 50249529  T
Q  116 aa 117  Q
    ||    
T  50249530 aa 50249531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 52679085 - 52679051
Alignment:
Q  16 ggtgatttggacatgtagagagaaaacttgtagat 50  Q
    |||||||||||||||||||||||| ||||||||||    
T  52679085 ggtgatttggacatgtagagagaagacttgtagat 52679051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 42510268 - 42510151
Alignment:
Q  1 tggaaaatatgtttaggtgatttggacatgtagagagaaaacttgtagattacatagtaaagagagtagatcagttagaggataatcatgtcactagatg 100  Q
    ||||||||| | ||||||| ||||||||||||||||  | || | ||||||   | |||| ||||||||||||| | ||||||| |||  |||||||| |    
T  42510268 tggaaaataggcttaggtggtttggacatgtagaga--agacctatagattttgtggtaaggagagtagatcagatggaggatagtcagatcactagagg 42510171  T
Q  101 tagaggaagatctagaaaaa 120  Q
     | ||||||| |||||||||    
T  42510170 caaaggaagacctagaaaaa 42510151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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