View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7179_high_12 (Length: 503)
Name: NF7179_high_12
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 7 - 488
Target Start/End: Complemental strand, 19270584 - 19270103
Alignment:
| Q |
7 |
gcaaagggacagtagaacttttctgaaacatcgaacatagcctcacacaacccttgaccccagcgatcaaaaacctcagccggtagaataaaacggcaaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||| |
|
|
| T |
19270584 |
gcaaagggacagtagaacttttctgaaacatcgaacatagcctcacacaacccttgaccccagcgatcaaaaacctcggcaggcagaataaaacggcaaa |
19270485 |
T |
|
| Q |
107 |
actccgcttccaacgaacctttgcactttggaaaaggacaccgaatattaacgatgttatcttcaagtttggaacctatgtatgatgccacacaatccga |
206 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19270484 |
actccgcttccaacgaacctttacactttggaaaaggacaccgaatattaacgatgttatcttcaagtttggaacctatgtatgatgccacacaatccga |
19270385 |
T |
|
| Q |
207 |
gcaataagcatgagaacaaccgctgatgtaaatagcgtccttcaatgttttagtgtccgtgcagatttcgcaaacgaatggagtgatacttgaatttgaa |
306 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19270384 |
gcaataagcatgagagcaaccgctgatgtaaatagcgtccttcattgttttagtgtccgtgcagatttcgcaaacgaatggagtgatacttgaatttgaa |
19270285 |
T |
|
| Q |
307 |
gactctcctttgtcaaaattgtttcttttacgctttccataagtggtattttttggaatgaaattgatgatcttaatatcgtcatcttcttcgtcagaaa |
406 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19270284 |
gactctcctttgtcaaacttgtttcttttacgctttccataaggggtattttttggaatgaaattgatgatcttaatatcgtcatcttcttcatcagaaa |
19270185 |
T |
|
| Q |
407 |
ggtcgatgacggcagagattggtcgtttgccggacaagcggaatgattcgaggtcgattacttctgccggagctttgtttct |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19270184 |
ggtcgatgacggcagagattggtcgtttgccggacaagcggaatgattcgaggtcgattacttctgccggagctttgtttct |
19270103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 31 - 472
Target Start/End: Complemental strand, 19314848 - 19314407
Alignment:
| Q |
31 |
gaaacatcgaacatagcctcacacaacccttgaccccagcgatcaaaaacctcagccggtagaataaaacggcaaaactccgcttccaacgaacctttgc |
130 |
Q |
| |
|
||||||||||||| ||||||||| | | | | |||||| || |||||||||| ||||| |||||| |||||||||| ||||| ||||| |||||||||| |
|
|
| T |
19314848 |
gaaacatcgaacaaagcctcacaaagcgccttaccccaccgttcaaaaaccttggccggaagaatagaacggcaaaaatccgcctccaaggaacctttgc |
19314749 |
T |
|
| Q |
131 |
actttggaaaaggacaccgaatattaacgatgttatcttcaagtttggaacctatgtatgatgccacacaatccgagcaataagcatgagaacaaccgct |
230 |
Q |
| |
|
|| ||||||||||||| |||| || |||||||| |||||||| |||||||| ||||| ||||| ||||| |||||||| | |||||||||||||| |
|
|
| T |
19314748 |
accctggaaaaggacactgaattttgacgatgttttcttcaagcttggaaccaatgtacatggccacgcaatcagagcaatatacgtgagaacaaccgct |
19314649 |
T |
|
| Q |
231 |
gatgtaaatagcgtccttcaatgttttagtgtccgtgcagatttcgcaaacgaatggagtgatacttgaatttgaagactctcctttgtcaaaattgttt |
330 |
Q |
| |
|
|||||| | ||| ||||||| |||||||||||| || |||||||| |||||||| || ||| || |||| ||||||||||||||||| |||| |||||| |
|
|
| T |
19314648 |
gatgtagaaagcatccttcattgttttagtgtcagtacagatttcacaaacgaaaggggtgttatttgagtttgaagactctcctttttcaatgttgttt |
19314549 |
T |
|
| Q |
331 |
cttttacgctttccataagtggtattttttggaatgaaattgatgatcttaatatcgtcatcttcttcgtcagaaaggtcgatgacggcagagattggtc |
430 |
Q |
| |
|
|||||||| ||| ||| | || |||| ||||||||| |||||||||||| || || |||||||| || ||||||| |||||||| ||||| |||| |
|
|
| T |
19314548 |
cttttacgttttgtggaagggatagttttcggaatgaaactgatgatcttaacgtcttcgtcttcttcatcggaaaggttgatgacggatgagatgggtc |
19314449 |
T |
|
| Q |
431 |
gtttgccggacaagcggaatgattcgaggtcgattacttctg |
472 |
Q |
| |
|
| |||||||| ||||| || | ||| ||||||||||| |||| |
|
|
| T |
19314448 |
gcttgccggagaagcgaaaagtttcaaggtcgattacctctg |
19314407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 488
Target Start/End: Complemental strand, 19260391 - 19259913
Alignment:
| Q |
10 |
aagggacagtagaacttttctgaaacatcgaacatagcctcacacaacccttgaccccagcgatcaaaaacctcagccggtagaataaaacggcaaaact |
109 |
Q |
| |
|
||||| ||||||||||||| ||||| | ||||| ||||||||| ||| ||||||| |||||| ||||||| | | ||||| ||||||||||| |
|
|
| T |
19260391 |
aaggggcagtagaactttttcgaaactttgaacaaagcctcacagaacagcagaccccaccgatcataaacctcgtctgaaagaatgggacggcaaaact |
19260292 |
T |
|
| Q |
110 |
ccgcttccaacgaacctttgcactttggaaaaggacaccgaatattaacgatgttatcttcaagtttggaacctatgtatgatgccacacaatccgagca |
209 |
Q |
| |
|
| |||||| |||||| ||| | | | | ||||||| ||||||| || ||||||||||||||||||||| |||||| | |||||||||| ||||| |
|
|
| T |
19260291 |
gtggatccaacaaaccttcgcaatctagtacaggacactgaatattgacaatgttatcttcaagtttggaattgatgtattttaccacacaatcggagca |
19260192 |
T |
|
| Q |
210 |
ataagcatgagaacaaccgctgatgtaaatagcgtccttcaatgttttagtgtccgtgcagatttcgcaaacgaatggagtgatacttgaatttgaagac |
309 |
Q |
| |
|
|||||| || || |||||||||||||| | ||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19260191 |
ataagcgtgggagcaaccgctgatgtagaaagcatccttcattgttttcgtgtccgtgcagatttcgcaaacgaatggagtgatacttgaatttgaagac |
19260092 |
T |
|
| Q |
310 |
tctcctttgtcaaaattgtttcttttacgctttccataagtggtattttttggaatgaaattgatgatcttaatatcgtcatcttcttcgtcagaaaggt |
409 |
Q |
| |
|
|||||||| || || |||||| ||||| ||||| ||| | | ||||||| ||| |||| |||| ||| ||||| | || |||||||| || | || | |
|
|
| T |
19260091 |
tctcctttttctaagttgtttgttttaggctttgtatatgagttatttttcggagtgaagttgaagatattaatgccttcgtcttcttcatcgaagagat |
19259992 |
T |
|
| Q |
410 |
cgatgacggcagagattggtcgtttgccggacaagcggaatgattcgaggtcgattacttctgccggagctttgtttct |
488 |
Q |
| |
|
|||||| | | |||||||||||| ||| | |||||||||||| || ||| ||||| |||||||||||| ||||||| |
|
|
| T |
19259991 |
tgatgacatcggggattggtcgtttaccgagcgagcggaatgatttgaagtccattacctctgccggagctatgtttct |
19259913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 19291804 - 19291733
Alignment:
| Q |
118 |
aacgaacctttgcactttggaaaaggacaccgaatattaacgatgttatcttcaagtttggaacctatgtat |
189 |
Q |
| |
|
||||| ||| ||||||| | || ||||||||||||||| || |||||||||||||| |||||||| |||||| |
|
|
| T |
19291804 |
aacgagcctctgcacttggaaataggacaccgaatattgaccatgttatcttcaagcttggaaccgatgtat |
19291733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 199 - 368
Target Start/End: Original strand, 13207028 - 13207197
Alignment:
| Q |
199 |
caatccgagcaataagcatgagaacaaccgctgatgtaaatagcgtccttcaatgttttagtgtccgtgcagatttcgcaaacgaatggagtgatacttg |
298 |
Q |
| |
|
||||| |||||||| |||||||| |||| ||||||||| | | | ||||||| | ||||||| || ||||||||||||||||| || ||||| || ||| |
|
|
| T |
13207028 |
caatcagagcaatatgcatgagagcaacagctgatgtagaaaacatccttcattcttttagtttcggtgcagatttcgcaaaccaactgagtgttatttg |
13207127 |
T |
|
| Q |
299 |
aatttgaagactctcctttgtcaaaattgtttcttttacgctttccataagtggtattttttggaatgaa |
368 |
Q |
| |
|
||||||||||||||| ||| || | |||||||||||||| | || | || ||||||||| |||||||| |
|
|
| T |
13207128 |
aatttgaagactctcttttttcgatgttgtttcttttacgttatcgaaaaagggtatttttgggaatgaa |
13207197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University