View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_high_16 (Length: 423)
Name: NF7179_high_16
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 40120556 - 40120944
Alignment:
| Q |
17 |
acattaatgggattttagagcccgattccttttgaccnnnnnnntaatccaatttcaacttcgacgggagggagggagagaaaacaacaaaatcattgat |
116 |
Q |
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| T |
40120556 |
acattaaggggattttagagcccgattccttttgaccaaaaaaataatccaatttcaacttcgacgggagggagggagagaaaacaacaaaatcattgat |
40120655 |
T |
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| Q |
117 |
ttgatcaactttgtagaaaaacggaaagaagtaatgggtaattagagaaaaatgtattggtcaccaagtagttttaagttaccatagaaggctctaattt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40120656 |
ttgatcaactttgtagaaaaacggaaagaagtaatgggtaattagagaaaaatgtattggtcaccaagtagttttaagttaccatagaaggctctgattt |
40120755 |
T |
|
| Q |
217 |
gtggatttgaagtgactcgcgtttggggatagatagatccatgattttgagattcaattttgtagttaatcaaacataagaattgctttaaatcacattt |
316 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40120756 |
gtggatttgaagtgactcgggtttggggatagatagatccatgattttgagattcaattttgtagttaatcaaacataagaattggtttaaatcacattt |
40120855 |
T |
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| Q |
317 |
taggattagaattgcatgcatactattttcgtctcaacacaatggtaatgtgactttaaaaccttcctcattcgaatttcacatgtttt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
40120856 |
taggattagaattgcatgcatactattttcgtctcaacacaatggtaatgtgactttaaaaccttcctcatttgaatttcatatgtttt |
40120944 |
T |
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