View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7179_high_22 (Length: 379)

Name: NF7179_high_22
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7179_high_22
NF7179_high_22
[»] chr8 (5 HSPs)
chr8 (3-161)||(7511020-7511178)
chr8 (189-277)||(7510905-7510993)
chr8 (293-360)||(7502009-7502076)
chr8 (7-127)||(13497929-13498049)
chr8 (19-100)||(31128772-31128852)
[»] chr5 (2 HSPs)
chr5 (7-127)||(27405478-27405598)
chr5 (7-125)||(30644333-30644451)
[»] chr6 (3 HSPs)
chr6 (41-127)||(8222782-8222868)
chr6 (67-136)||(30446860-30446930)
chr6 (84-136)||(12513770-12513823)
[»] chr7 (4 HSPs)
chr7 (201-268)||(40670072-40670140)
chr7 (67-104)||(33078223-33078260)
chr7 (67-107)||(30567219-30567259)
chr7 (67-107)||(37888443-37888483)
[»] chr3 (6 HSPs)
chr3 (7-78)||(38571488-38571559)
chr3 (67-127)||(43476060-43476120)
chr3 (67-136)||(7008808-7008878)
chr3 (67-104)||(15007802-15007839)
chr3 (1-74)||(20140217-20140290)
chr3 (310-351)||(27246441-27246482)
[»] chr4 (3 HSPs)
chr4 (67-136)||(28901835-28901905)
chr4 (64-138)||(7695304-7695378)
chr4 (67-127)||(31335852-31335912)
[»] chr1 (4 HSPs)
chr1 (67-136)||(8471917-8471987)
chr1 (67-127)||(10265261-10265321)
chr1 (67-127)||(36231642-36231702)
chr1 (67-124)||(43739718-43739775)
[»] scaffold1183 (1 HSPs)
scaffold1183 (19-91)||(323-395)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 3 - 161
Target Start/End: Complemental strand, 7511178 - 7511020
Alignment:
Q  3 ggatagagttcaactagtttaatggattcatcacctctttcatccaattcatctttccactcactttcaacacccacatgcaatggttccaacatgttga 102  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7511178 ggatatagttcaactagtttaatggattcatcacctctttcatccacatcatctttccactcactttcaacacccacat-caatggttccaacatgttga 7511080  T
Q  103 agcttccattcaactacccattgca-ttggtcttaaaattgaagtgcgcaggaaaaggaa 161  Q
    |||||||||||||||| |||||||| ||||||||||| |||||||||||||||| |||||    
T  7511079 agcttccattcaactatccattgcacttggtcttaaagttgaagtgcgcaggaagaggaa 7511020  T

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Target: chr8; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 189 - 277
Target Start/End: Complemental strand, 7510993 - 7510905
Alignment:
Q  189 aataaaagaacattttttaagttaaaatccaaataatattaacaataaataattaaaccggtagcaagtaatgagaagaagaaagtttg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7510993 aataaaagaacattttttaagttaaaatccaaataatattaacaataaataattaaaccggtagcaagtaatgagaagaagaaagtttg 7510905  T

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Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 293 - 360
Target Start/End: Complemental strand, 7502076 - 7502009
Alignment:
Q  293 atccaatcgttaacgatgtcatctccactttccccggtggttacaattcattcttctccgatgcgttc 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7502076 atccaatcgttaacgatgtcatctccactttccccggtggttacagttcattcttctccgatgcgttc 7502009  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 13497929 - 13498049
Alignment:
Q  7 agagttcaactagtttaatggattcatcacctctttcatccaattcatctttccactcactttcaacacccacatgcaatggttccaacatgttgaagct 106  Q
    ||||||||||  |||||||| ||| ||| |||||||||||||  |||||||||||| |||||||||||||||  | |||||||| ||||||||| || ||    
T  13497929 agagttcaacatgtttaatgcatttatcccctctttcatccacatcatctttccacccactttcaacacccatctccaatggtttcaacatgtttaaact 13498028  T
Q  107 tccattcaactacccattgca 127  Q
    | |||||||| ||||||||||    
T  13498029 tgcattcaacaacccattgca 13498049  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 31128852 - 31128772
Alignment:
Q  19 gtttaatggattcatcacctctttcatccaattcatctttccactcactttcaacacccacatgcaatggttccaacatgtt 100  Q
    ||||||| | ||||||||||||||||||||  |||||||||| |||| ||||||||  | | |||||||||| |||||||||    
T  31128852 gtttaattgcttcatcacctctttcatccacatcatctttcccctcaatttcaacatgctcttgcaatggtt-caacatgtt 31128772  T

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Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 27405598 - 27405478
Alignment:
Q  7 agagttcaactagtttaatggattcatcacctctttcatccaattcatctttccactcactttcaacacccacatgcaatggttccaacatgttgaagct 106  Q
    |||||||||||  ||||||| |||||||||||||||||||||  |||||| |||||||||||||||||||||  | |||||||||||||||||| |||||    
T  27405598 agagttcaacttatttaatgcattcatcacctctttcatccacatcatctgtccactcactttcaacacccatctccaatggttccaacatgtttaagct 27405499  T
Q  107 tccattcaactacccattgca 127  Q
    | |||||||||||||||||||    
T  27405498 tgcattcaactacccattgca 27405478  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 30644451 - 30644333
Alignment:
Q  7 agagttcaactagtttaatggattcatcacctctttcatccaattcatctttccactcactttcaacacccacatgcaatggttccaacatgttgaagct 106  Q
    ||||||||||  |||||||| |||||||||||||||||||||  ||| ||||||||||||||||||||||||  | |||||||  ||||||||| ||| |    
T  30644451 agagttcaacatgtttaatgcattcatcacctctttcatccacatcaactttccactcactttcaacacccatcttcaatggtctcaacatgtttaagtt 30644352  T
Q  107 tccattcaactacccattg 125  Q
    | |||||||| ||| ||||    
T  30644351 tgcattcaacaacctattg 30644333  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 8222782 - 8222868
Alignment:
Q  41 ttcatccaattcatctttccactcactttcaacacccacatgcaatggttccaacatgttgaagcttccattcaactacccattgca 127  Q
    ||||||||  |||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||| ||||||||    
T  8222782 ttcatccacatcatctttccactcactttcaatacccacgtacaatggttccaacatgttgaagcttccattcaactatccattgca 8222868  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 30446860 - 30446930
Alignment:
Q  67 tttcaacacccacatgcaatggttccaacatgttgaagcttccattcaactacccattgca-ttggtctta 136  Q
    ||||||||||||||||||||| || ||||||||||||||||   |||||| | |||||||| |||||||||    
T  30446860 tttcaacacccacatgcaatgatttcaacatgttgaagcttggtttcaacaagccattgcacttggtctta 30446930  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 12513770 - 12513823
Alignment:
Q  84 aatggttccaacatgttgaagcttccattcaactacccattgca-ttggtctta 136  Q
    ||||||| ||||||||||||||||  ||||||| |||||||||| |||||||||    
T  12513770 aatggttgcaacatgttgaagcttggattcaacaacccattgcacttggtctta 12513823  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 40670072 - 40670140
Alignment:
Q  201 ttttttaagttaaaatccaaataatattaacaataaataattaaaccggtagcaag-taatgagaagaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  40670072 ttttttaagttaaaatccaaataatattaacaataaataattaaatcggtagcaagttaatgagaagaa 40670140  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 33078260 - 33078223
Alignment:
Q  67 tttcaacacccacatgcaatggttccaacatgttgaag 104  Q
    |||||||||||||||||||||||| |||||||||||||    
T  33078260 tttcaacacccacatgcaatggtttcaacatgttgaag 33078223  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 30567219 - 30567259
Alignment:
Q  67 tttcaacacccacatgcaatggttccaacatgttgaagctt 107  Q
    ||||||||| |||||||||||||| ||| ||||||||||||    
T  30567219 tttcaacactcacatgcaatggtttcaatatgttgaagctt 30567259  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 37888443 - 37888483
Alignment:
Q  67 tttcaacacccacatgcaatggttccaacatgttgaagctt 107  Q
    ||||||||| ||||||||||| || ||||||||||||||||    
T  37888443 tttcaacactcacatgcaatgctttcaacatgttgaagctt 37888483  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 38571559 - 38571488
Alignment:
Q  7 agagttcaactagtttaatggattcatcacctctttcatccaattcatctttccactcactttcaacaccca 78  Q
    ||||||||||  |||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  38571559 agagttcaacatgtttaatgaattcatcacctctttcatccacgtcatctttccactcactttcaacaccca 38571488  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 43476060 - 43476120
Alignment:
Q  67 tttcaacacccacatgcaatggttccaacatgttgaagcttccattcaactacccattgca 127  Q
    |||||||||||||||||||||||| | ||||||||||||||   |||||| ||||||||||    
T  43476060 tttcaacacccacatgcaatggtttctacatgttgaagcttggtttcaacaacccattgca 43476120  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 7008808 - 7008878
Alignment:
Q  67 tttcaacacccacatgcaatggttccaacatgttgaagcttccattcaactacccattgca-ttggtctta 136  Q
    ||||||||||||||| |||||||| ||||||||||||||||   |||||| | |||||||| |||||||||    
T  7008808 tttcaacacccacatacaatggtttcaacatgttgaagcttggtttcaacaagccattgcacttggtctta 7008878  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 15007802 - 15007839
Alignment:
Q  67 tttcaacacccacatgcaatggttccaacatgttgaag 104  Q
    |||||||||||||||||||||||| |||||||||||||    
T  15007802 tttcaacacccacatgcaatggtttcaacatgttgaag 15007839  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 20140217 - 20140290
Alignment:
Q  1 caggatagagttcaactagtttaatggattcatcacctctttcatccaattcatctttccactcactttcaaca 74  Q
    ||||| ||| ||||||  ||||||| | ||||||||||||||||||||  |||||||||| |||| ||||||||    
T  20140217 caggacagaattcaacatgtttaattgcttcatcacctctttcatccacatcatctttcccctcaatttcaaca 20140290  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 351
Target Start/End: Original strand, 27246441 - 27246482
Alignment:
Q  310 gtcatctccactttccccggtggttacaattcattcttctcc 351  Q
    ||||||||||||||||| ||||||||| |||| |||||||||    
T  27246441 gtcatctccactttccctggtggttaccattccttcttctcc 27246482  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 28901835 - 28901905
Alignment:
Q  67 tttcaacacccacatgcaatggttccaacatgttgaagcttccattcaactacccattgca-ttggtctta 136  Q
    |||||||||||||||||||||||| |||||||||||||| |   ||||||||||||||||| |||||||||    
T  28901835 tttcaacacccacatgcaatggtttcaacatgttgaagcgtggtttcaactacccattgcacttggtctta 28901905  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 7695378 - 7695304
Alignment:
Q  64 cactttcaacacccacatgcaatggttccaacatgttgaagcttccattcaactacccattgca-ttggtcttaaa 138  Q
    ||||||||||||||||||||||| ||| ||||||||||||| ||  ||||||| |||| ||||| |||||||||||    
T  7695378 cactttcaacacccacatgcaattgtttcaacatgttgaaggttggattcaacaaccc-ttgcacttggtcttaaa 7695304  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 31335912 - 31335852
Alignment:
Q  67 tttcaacacccacatgcaatggttccaacatgttgaagcttccattcaactacccattgca 127  Q
    |||||||||||||||||||||||| |||||| ||||||| |   |||||| ||||||||||    
T  31335912 tttcaacacccacatgcaatggtttcaacattttgaagcatggtttcaacaacccattgca 31335852  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 8471917 - 8471987
Alignment:
Q  67 tttcaacacccacatgcaatggttccaacatgttgaagcttccattcaactacccattgca-ttggtctta 136  Q
    ||||||||| |||||| ||||||| ||||||||||||||||   ||||||||||||||||| |||||||||    
T  8471917 tttcaacacacacatgtaatggtttcaacatgttgaagcttggtttcaactacccattgcacttggtctta 8471987  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 10265321 - 10265261
Alignment:
Q  67 tttcaacacccacatgcaatggttccaacatgttgaagcttccattcaactacccattgca 127  Q
    |||||||||| ||||||||||||| ||||||||||||||||   |||||| ||||||||||    
T  10265321 tttcaacaccaacatgcaatggtttcaacatgttgaagcttggtttcaacaacccattgca 10265261  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 36231642 - 36231702
Alignment:
Q  67 tttcaacacccacatgcaatggttccaacatgttgaagcttccattcaactacccattgca 127  Q
    |||||||||||||||||||||||| |||||||||||| |||   |||||| ||||||||||    
T  36231642 tttcaacacccacatgcaatggtttcaacatgttgaaacttggtttcaacaacccattgca 36231702  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 43739718 - 43739775
Alignment:
Q  67 tttcaacacccacatgcaatggttccaacatgttgaagcttccattcaactacccatt 124  Q
    |||||| |||||||||||||  || ||||||||||||||||   ||||||||||||||    
T  43739718 tttcaatacccacatgcaataatttcaacatgttgaagcttggtttcaactacccatt 43739775  T

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Target: scaffold1183 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1183
Description:

Target: scaffold1183; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 323 - 395
Alignment:
Q  19 gtttaatggattcatcacctctttcatccaattcatctttccactcactttcaacacccacatgcaatggttc 91  Q
    ||||||| | ||||||||||||||||||||  |||||||||| |||| ||||||||  | | |||||||||||    
T  323 gtttaattgcttcatcacctctttcatccacatcatctttcccctcattttcaacatgctcttgcaatggttc 395  T

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