View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7179_high_23 (Length: 323)
Name: NF7179_high_23
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_high_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 47122412 - 47122198
Alignment:
| Q |
14 |
aaattatgtaaaagtagagatcacaccaacatggtaatgactataatgatatctttgataaaatgatacacgagtaataggcacacaactactaggaata |
113 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47122412 |
aaattatgtaaaagtagagatcaaaccaacatggtaatgactataatgatatctttgataaaatgatacacaagtaataggcacacaactactaggaata |
47122313 |
T |
|
| Q |
114 |
taaacctaatacggtc--ctataagta-agtgatataatgatgaatgcatagagaaaaggttattgttagtaaaagaaaaagtcgacaaacctctctttg |
210 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47122312 |
taaacctaatacggtcctctataagtatagtgatataatgatgaatgcatagagaaaaggtaattgttagtaaaagaaaaagtcgacaaacctctctttg |
47122213 |
T |
|
| Q |
211 |
ttgcagctctttcct |
225 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
47122212 |
ttgcagctctttcct |
47122198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University