View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_high_25 (Length: 317)
Name: NF7179_high_25
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 33387221 - 33386943
Alignment:
| Q |
16 |
cagatgtaagtagtgaggccatatgaacgtataatatatataaataaggcgacaaaggaccaccacgacggttggcggaggctacaaagaggagtaataa |
115 |
Q |
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| T |
33387221 |
cagatgtaagtagcgaggccatatgaacgtataatatatataaataaggcgacaaaggaccaccacgaaggttggcggaggctacaaagaggagtaataa |
33387122 |
T |
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| Q |
116 |
gaccaacacaatcattattatgtaggaagtggtagcttacctatgtcacatactgaatgatctgaccaatctgaatatatggaataaaaccaatttttgc |
215 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33387121 |
gaccaacacaatcattaatatgtaggaagtggtagcttacctatgtcacatactgaatgatctgaccaatctgaatatatggaataaaaccaatttttgc |
33387022 |
T |
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| Q |
216 |
atcacgtacattggcccggttaaaagttttccaatgtcacgttttagtttcttttcaaaatttgtttatatatgcctct |
294 |
Q |
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| T |
33387021 |
atcacgtacattggcccggttaaaagttttccaatgtcacgttttagtttcttttcaaaatttgtttatatatgcctct |
33386943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 285
Target Start/End: Complemental strand, 33386107 - 33386079
Alignment:
| Q |
257 |
ttttagtttcttttcaaaatttgtttata |
285 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33386107 |
ttttagtttcttttcaaaatttgtttata |
33386079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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