View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_high_3 (Length: 796)
Name: NF7179_high_3
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_high_3 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 174 - 783
Target Start/End: Complemental strand, 7375950 - 7375335
Alignment:
| Q |
174 |
atcatttatttgatattatcaagctgaatacacaaaaatgagacgtaatttttaatatgaagttgtaatctgtagcactatatttgaataattgaaaacc |
273 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7375950 |
atcatttatttgatattatcaagctgaatacacaaaaatgagacgtagtttttaatatgaagttgtaatctgtagcactatatttg-------------- |
7375865 |
T |
|
| Q |
274 |
tcaacagttactttgctgttggctgaattttatgatccatcacttgtcaagagagtttggaagccactttcattgaagttagttacattgatcacaataa |
373 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7375864 |
----ctgttactttgctgttggctgaattttatgatccatcacttgtcaagagaatttggaagccactttctttgaagttagttacattgatcacaataa |
7375769 |
T |
|
| Q |
374 |
acacatgattgagaga--acaaa-ttcattacaaaaacaagatcattaaagaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaag |
470 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375768 |
acacatgattgagagacaacaaaattcattacaaagacaagatcattaaacaaagcaaaagtcatcaaatgcaaccattatgtctgtgtttggcatcaac |
7375669 |
T |
|
| Q |
471 |
attcctcctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagctgctccaccctttgtgtgagagatgtaagaagtgttgtttgc |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
7375668 |
attcctcctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagctgctccactctttgtgtaagagatgtaagaagtgttgtttgc |
7375569 |
T |
|
| Q |
571 |
ttttcattcctctcaaataattgtgacatcatttccatcatcttttcattgtcctccatcatccttttcaacatttttctattccctccatcttcttcct |
670 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7375568 |
ttctcattcctctcaaataattgtgccatcatttccatcatcttctcattgtcctccatcatccttttcaacatttttctattccctccatcttcttcct |
7375469 |
T |
|
| Q |
671 |
------ccttaacctcctcaaatccattt---------------tcttctttcacatccacactttcctcaattccttcctcccccaaacttgttcccac |
749 |
Q |
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|| ||||||||||| ||||| |||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| |
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| T |
7375468 |
tataacaattctcctcctcaaattcatttccaattctaccctcctcttctttcacatctacactttccttaattccttcctccaccaaacttgttcccac |
7375369 |
T |
|
| Q |
750 |
actctcttccttctcttctacctccatattcttc |
783 |
Q |
| |
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||||||||||||||||||||||||||| |||||| |
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| T |
7375368 |
actctcttccttctcttctacctccatcttcttc |
7375335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 334 - 783
Target Start/End: Original strand, 7278029 - 7278504
Alignment:
| Q |
334 |
aagccactttcattgaagttagttacattgat--cacaataaacacatgattgagaga--acaaa-ttcattacaaaaacaagatcattaaagaaagcaa |
428 |
Q |
| |
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||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||| |
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| T |
7278029 |
aagccactttcattgaagttagttacactgatatcacaataaacacatgattgagagacaacaaaattcattacaaagacaagatcattaaacaaagcaa |
7278128 |
T |
|
| Q |
429 |
aagtcatcaaatgcaaccattatgtctgtgtttggcatcaagattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaaagctctctcaagc |
528 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7278129 |
aagtcatcaaatgcaaccattatgtctgtgtttggcatcaacattcctcctcttcttattcttcctcctcaacttgtcaaaagtaaatgctctctcaagc |
7278228 |
T |
|
| Q |
529 |
tgctccaccctttgtgtgagagatgtaagaagtgttgtttgcttttcattcctctcaaataattgtgacatcatttccatcatcttttcattgtcctcca |
628 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
7278229 |
tgctccactctttgtgtaagagatgtaagaagtgttgtttgcttctcattcctctcaaataattgtgccatcatttccatcatcttctcattgtcctcca |
7278328 |
T |
|
| Q |
629 |
tcatccttttcaacatttttctattccctccatcttcttcct------ccttaacctcctcaaatccattt---------------tcttctttcacatc |
707 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| |
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| T |
7278329 |
tcatccttttcaacatttttctattccctccatcttcttccttataacaattctcctcctcaaattcatttccaattctaccctcctcttctttcacatc |
7278428 |
T |
|
| Q |
708 |
cacactttcctcaattccttcctcccccaaacttgttcccacactctcttccttctcttctacctccatattcttc |
783 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7278429 |
tacactttccttaattccttcctccaccaaacttgttcccacactctcttccttctcttctacctccatcttcttc |
7278504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 7376076 - 7375962
Alignment:
| Q |
24 |
agtagtctatgacaaatcatattgtatataaattaaaaatcctcgaaggtttcatccctaaaaatgttagagaagtgctaggaaatggttgaaataatgg |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7376076 |
agtagtctatgacaaatcatattgtatataaattaaaaatcctcgaaggtttcatccctaaaaatgttagagaagtgctaggaaatggttgaaataatgg |
7375977 |
T |
|
| Q |
124 |
aatagaaggatcact |
138 |
Q |
| |
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||||||||||||||| |
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| T |
7375976 |
aatagaaggatcact |
7375962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 58 - 192
Target Start/End: Complemental strand, 27766256 - 27766121
Alignment:
| Q |
58 |
aaaaatcctcgaaggtttcatccctaaaaatgttagagaagtgctaggaaatggttgaaataatggaatagaaggatcactatgaatatagctcttgata |
157 |
Q |
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||||||||||||||||| ||||||| |||||| ||| | ||| | ||||||||||||| || | |||||| ||||||||||||| ||||||||||| | |
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| T |
27766256 |
aaaaatcctcgaaggttccatccctgaaaatgctagggg-gtgtttggaaatggttgaagtagttgaataggaggatcactatgactatagctcttggtt |
27766158 |
T |
|
| Q |
158 |
aatttaccaa--gtgaaaatcatttatttgatattat |
192 |
Q |
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|||||||||| ||||||| |||||||||||||||| |
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| T |
27766157 |
aatttaccaaagatgaaaatgatttatttgatattat |
27766121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 208817 - 208873
Alignment:
| Q |
98 |
gtgctaggaaatggttgaaataatggaatagaaggatcactatgaatatagctcttg |
154 |
Q |
| |
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||||| ||||||||||||| |||| |||||| ||||||||||||| |||||| |||| |
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| T |
208817 |
gtgctcggaaatggttgaagtaattgaataggaggatcactatgactatagcccttg |
208873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 192
Target Start/End: Complemental strand, 11113319 - 11113229
Alignment:
| Q |
104 |
ggaaatggttgaaataatggaatagaaggatcactatgaatatagctcttgataaatttaccaa--gtgaaaatcatttatttgatattat |
192 |
Q |
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|||||| ||||||||| | |||||| | ||||||||||| |||| | ||| |||||||||||| ||||||| |||||||||||||||| |
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| T |
11113319 |
ggaaatagttgaaatagttgaataggaagatcactatgactataacatttggtaaatttaccaaagatgaaaatgatttatttgatattat |
11113229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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