View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_high_33 (Length: 269)
Name: NF7179_high_33
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 254
Target Start/End: Complemental strand, 34564467 - 34564224
Alignment:
| Q |
11 |
acatcaggataccttgaaatgatgatgacagtgtatggtaagtcaggaagcatgctgagagctccttttcacttggctgatgatatggtatggaataaat |
110 |
Q |
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| T |
34564467 |
acatcaggataccttgaaatgatgatgacagtgtatggtaagtcaggaagcatgcagagagctccttttcacttggctgatgatatggtatggaataaat |
34564368 |
T |
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| Q |
111 |
agggtacctatccaaagataaacaattccgtctaagttttttgtaccttggaatctaacagaaactatatcttatacagcaaaagtaagaatgcaaatag |
210 |
Q |
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| T |
34564367 |
agggtacctatccaaagataaacaattccgtctaagttctttgtaccttggaatctaatagaaactatatattatacagcaaaagtaagaatgcaaatag |
34564268 |
T |
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| Q |
211 |
aagcttcacaagatttgtcgtaatttgcaaaaaactactaactt |
254 |
Q |
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| T |
34564267 |
aagcttcacaagatttgtcgtaatttgcagaaaactactaactt |
34564224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 118
Target Start/End: Original strand, 15293650 - 15293745
Alignment:
| Q |
23 |
cttgaaatgatgatgacagtgtatggtaagtcaggaagcatgctgagagctccttttcacttggctgatgatatggtatggaataaatagggtacc |
118 |
Q |
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| T |
15293650 |
cttgaaatgatgatgacaatgtatggtaagtctggaagcatgctgaaagctccttttcacttggctgatgatttgttatggagtaatcagggtacc |
15293745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 38300972 - 38300927
Alignment:
| Q |
19 |
ataccttgaaatgatgatgacagtgtatggtaagtcaggaagcatg |
64 |
Q |
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| T |
38300972 |
ataccttgaaatgaagatgaaagtgtgtggtaagtgaggaagcatg |
38300927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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