View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_high_4 (Length: 773)
Name: NF7179_high_4
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 382
Target Start/End: Original strand, 38423459 - 38423820
Alignment:
| Q |
20 |
tcagtatctactcgtgtctggtaagtaagaccccttcgttctagttttctataaattcnnnnnnntgctaataagtgttgtgtattgatcaagatgcgta |
119 |
Q |
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| T |
38423459 |
tcagtatctactcgtgtctggtaagtaagaccccttccttctagttttctataaattcaaaaaaatgctaataattgttgtgtattgatcaagatg--ta |
38423556 |
T |
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| Q |
120 |
cggttcacaaaagaagctagaattcatctttaaaaagatgaatttttaactaataggttatttgacaaaaagaaaa--cagnnnnnnncaatgtaaaact |
217 |
Q |
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| T |
38423557 |
tggttcacaaaagaagctagaattcatctttaaaaagatgaatttttaactaatagattatttgacaaaaaaaaaaaacagtttttttcaatgtaaaact |
38423656 |
T |
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| Q |
218 |
tcaacttttattttctttaactagtatatcgtatcaccagttaacctccctaagaactcaaaattaaaattaacattccnnnnnnnnnnatgttaacatt |
317 |
Q |
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| T |
38423657 |
ttaacttttattttctttaactagtatatcgtatcaccagttaacctccctaagaactcaaaattaaaattaacattcc-tttttttttatgttaacatt |
38423755 |
T |
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| Q |
318 |
cttttctctaactgaaccnnnnnnnctactaaaaataaacgttattcatcgattaaatttggtag |
382 |
Q |
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| T |
38423756 |
cttttctctaactgaaccaaaaaaactactaaaaataaacgttattcatcgattaaatttggtag |
38423820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 437 - 604
Target Start/End: Original strand, 38423875 - 38424042
Alignment:
| Q |
437 |
tcacaacatagaggttaataaatatgactatattcaagtgtgcagaatacttatgtctccacctataatgttgagaatatcaaagtcaataatttgattt |
536 |
Q |
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| T |
38423875 |
tcacaacatagaggttaataaatatgactatattcaagtgtgcagaatacttatgtctccacctataatgttgagaatgtcaaagtcaataatttgattt |
38423974 |
T |
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| Q |
537 |
gcaccgtatcaaaatcaatctttcaatttaaataaaatgagcattgcatcaagatcgaaaaagaaggg |
604 |
Q |
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| T |
38423975 |
gcaccgtatcaaaatcaatctttcaatttaaataaaatgagcattgcatcaagatcgaaaaagaaggg |
38424042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 719 - 754
Target Start/End: Original strand, 38424153 - 38424188
Alignment:
| Q |
719 |
attttaaaggattgttcatgtgaaagttgagcttaa |
754 |
Q |
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| T |
38424153 |
attttaaaggattgttcatgtgaaagttgagcttaa |
38424188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 497
Target Start/End: Original strand, 32778782 - 32778823
Alignment:
| Q |
456 |
aaatatgactatattcaagtgtgcagaatacttatgtctcca |
497 |
Q |
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| T |
32778782 |
aaatatgactatattcaagtctccagaatactcatgtctcca |
32778823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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