View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7179_high_40 (Length: 250)

Name: NF7179_high_40
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7179_high_40
NF7179_high_40
[»] chr8 (4 HSPs)
chr8 (1-151)||(14001469-14001612)
chr8 (148-223)||(14002083-14002157)
chr8 (156-206)||(15216069-15216119)
chr8 (164-205)||(30579033-30579074)
[»] chr1 (4 HSPs)
chr1 (156-206)||(13027298-13027348)
chr1 (161-206)||(35829195-35829240)
chr1 (156-206)||(32083542-32083592)
chr1 (156-206)||(37463659-37463709)
[»] chr4 (2 HSPs)
chr4 (156-205)||(16002350-16002399)
chr4 (156-206)||(39707897-39707947)
[»] chr3 (2 HSPs)
chr3 (157-206)||(9258321-9258370)
chr3 (156-206)||(29816940-29816990)
[»] chr7 (4 HSPs)
chr7 (156-206)||(36870086-36870136)
chr7 (156-206)||(21520230-21520280)
chr7 (156-206)||(32630043-32630093)
chr7 (165-206)||(20499544-20499585)
[»] chr2 (3 HSPs)
chr2 (161-206)||(13148757-13148802)
chr2 (156-206)||(24584403-24584453)
chr2 (161-206)||(876589-876634)
[»] chr6 (3 HSPs)
chr6 (156-206)||(5258947-5258997)
chr6 (156-206)||(5631252-5631302)
chr6 (156-206)||(20428434-20428484)
[»] chr5 (4 HSPs)
chr5 (156-206)||(3301284-3301334)
chr5 (156-206)||(3394146-3394196)
chr5 (155-192)||(14099775-14099812)
chr5 (161-206)||(43558608-43558653)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 14001469 - 14001612
Alignment:
Q  1 ttcatttgaattcattaacatcacacaatgatcaggaaaacaacgtcgataaacaaggtctaaaatttccaagttctgtaacaaggaagttacaacttac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||       ||||    
T  14001469 ttcatttgaattcattaacatcacacaatgatcaggaaaacaacgtcgataaacaaggtctgaaatttccaagttctgtaacaaggaag-------ttac 14001561  T
Q  101 aagtcatcgctgagagattaaatgctactaacaggctagtgtcaaactatg 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14001562 aagtcatcgctgagagattaaatgctactaacaggctagtgtcaaactatg 14001612  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 14002083 - 14002157
Alignment:
Q  148 tatgtgcgaaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcctatgaaaaagacttcaa 223  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  14002083 tatgtgcgaaaaacatacatcttcgtgctagctcttg-atgtgtttggtaagtacatcctatgaaaaagacttcaa 14002157  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 15216069 - 15216119
Alignment:
Q  156 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    ||||||||||||||| |||||| ||||||||||||||| || |||||||||    
T  15216069 aaaaacatacatctcggtgctaactcttggatgtgttctgtcagtacatcc 15216119  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 30579033 - 30579074
Alignment:
Q  164 acatctccgtgctagctcttggatgtgttcggtaagtacatc 205  Q
    ||||||| ||||||||||||| |||||||| |||||||||||    
T  30579033 acatctcagtgctagctcttgtatgtgttctgtaagtacatc 30579074  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 13027298 - 13027348
Alignment:
Q  156 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    ||||||||||||||| |||||||||||||||||| ||| ||||||||||||    
T  13027298 aaaaacatacatctcagtgctagctcttggatgttttctgtaagtacatcc 13027348  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 35829195 - 35829240
Alignment:
Q  161 catacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    ||||||| || |||||||||||||||||||||| ||||||||||||    
T  35829195 catacatatcggtgctagctcttggatgtgttctgtaagtacatcc 35829240  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 32083542 - 32083592
Alignment:
Q  156 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    |||| |||||||||| |||||| ||||||||||||||| || |||||||||    
T  32083542 aaaagcatacatctcggtgctaactcttggatgtgttctgtcagtacatcc 32083592  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 37463659 - 37463709
Alignment:
Q  156 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    |||| |||||||||| |||||| ||||||||||||||| ||||| ||||||    
T  37463659 aaaagcatacatctcggtgctaactcttggatgtgttccgtaagaacatcc 37463709  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 16002399 - 16002350
Alignment:
Q  156 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatc 205  Q
    ||||||||||||||| |||||| ||||||||||||||| |||||||||||    
T  16002399 aaaaacatacatctcggtgctaactcttggatgtgttccgtaagtacatc 16002350  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 39707947 - 39707897
Alignment:
Q  156 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    |||||||||||| || |||| | ||||||||||||||| ||||||||||||    
T  39707947 aaaaacatacatatcggtgcaaactcttggatgtgttctgtaagtacatcc 39707897  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 9258370 - 9258321
Alignment:
Q  157 aaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||||||||    
T  9258370 aaaacatacatctcggtgctaactcttggatgtgttccgtaagtacatcc 9258321  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 29816990 - 29816940
Alignment:
Q  156 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    ||||||||||||||| |||||| |||| |||||||||  ||||||||||||    
T  29816990 aaaaacatacatctcggtgctaactctaggatgtgttttgtaagtacatcc 29816940  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 36870086 - 36870136
Alignment:
Q  156 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    |||| |||||||||| |||||||||||||||||||||| || |||||||||    
T  36870086 aaaagcatacatctcggtgctagctcttggatgtgttccgtcagtacatcc 36870136  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 21520230 - 21520280
Alignment:
Q  156 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    |||| |||||||||| |||||| ||||||||||||||| |||| |||||||    
T  21520230 aaaagcatacatctcggtgctaactcttggatgtgttccgtaaatacatcc 21520280  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 32630093 - 32630043
Alignment:
Q  156 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    |||| |||||||||| |||||| ||||||||||||||| || |||||||||    
T  32630093 aaaagcatacatctcggtgctaactcttggatgtgttccgttagtacatcc 32630043  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 20499585 - 20499544
Alignment:
Q  165 catctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    |||||| |||||||||||||||||||||| | ||||||||||    
T  20499585 catctcggtgctagctcttggatgtgttccgcaagtacatcc 20499544  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 13148802 - 13148757
Alignment:
Q  161 catacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    |||||||||  |||||||||||||||||||||| ||||||||||||    
T  13148802 catacatcttagtgctagctcttggatgtgttctgtaagtacatcc 13148757  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 24584403 - 24584453
Alignment:
Q  156 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    ||||||||||||||| ||| || ||||||||||||||| || |||||||||    
T  24584403 aaaaacatacatctcggtgataactcttggatgtgttccgttagtacatcc 24584453  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 876634 - 876589
Alignment:
Q  161 catacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    |||||||||  ||||| |||||||||||||||| ||||||||||||    
T  876634 catacatcttggtgctcgctcttggatgtgttccgtaagtacatcc 876589  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 5258947 - 5258997
Alignment:
Q  156 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    |||| |||||||||| |||||| ||||||||||||||| || |||||||||    
T  5258947 aaaagcatacatctcggtgctaactcttggatgtgttccgtcagtacatcc 5258997  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 5631302 - 5631252
Alignment:
Q  156 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    |||||||| |||||| |||||| ||||||||||||||| || |||||||||    
T  5631302 aaaaacatgcatctcggtgctaactcttggatgtgttccgtcagtacatcc 5631252  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 20428434 - 20428484
Alignment:
Q  156 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    |||| |||||||||| |||||| |||||| |||||||| ||||||||||||    
T  20428434 aaaagcatacatctcggtgctaactcttgaatgtgttccgtaagtacatcc 20428484  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 3301334 - 3301284
Alignment:
Q  156 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    |||| |||||||||| |||||| ||||||||||||||| || |||||||||    
T  3301334 aaaagcatacatctcggtgctaactcttggatgtgttctgtcagtacatcc 3301284  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 3394196 - 3394146
Alignment:
Q  156 aaaaacatacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    |||| |||||||||| |||||| ||||||||||||||| || |||||||||    
T  3394196 aaaagcatacatctcggtgctaactcttggatgtgttccgtcagtacatcc 3394146  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 14099812 - 14099775
Alignment:
Q  155 gaaaaacatacatctccgtgctagctcttggatgtgtt 192  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  14099812 gaaaaacatacatctcggtgctagctcttgcatgtgtt 14099775  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Original strand, 43558608 - 43558653
Alignment:
Q  161 catacatctccgtgctagctcttggatgtgttcggtaagtacatcc 206  Q
    |||| ||||| ||| |||||||||||||||||| ||||||||||||    
T  43558608 catatatctcggtgttagctcttggatgtgttccgtaagtacatcc 43558653  T

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