View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_high_42 (Length: 244)
Name: NF7179_high_42
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_high_42 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 114 - 244
Target Start/End: Original strand, 45563810 - 45563940
Alignment:
| Q |
114 |
ctagtactactaagcagtgaaatggactaagctagtttttgagtccaaccaccacaaattgaataaattcacatttcaccacaccactaccatttacatc |
213 |
Q |
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| T |
45563810 |
ctagtactactaagcagtgaaatggactaagctagtttttgagtccaaccaccacaaattgaataaattcacatttcaccacaccactaccatttacatc |
45563909 |
T |
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| Q |
214 |
ccaaaatcagagccaaaaaaccacgattcat |
244 |
Q |
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| T |
45563910 |
ccaaaatcagagccaaaaaaccacgattcat |
45563940 |
T |
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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 45563709 - 45563779
Alignment:
| Q |
13 |
aatatccaaaaagagtnnnnnnncaattgcaaaattgttcctttcttctgtctttgataccccatttacac |
83 |
Q |
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| T |
45563709 |
aatatccaaaaagagtaaaaaaacaattgcaaaattgttcctttcttctgtctttgataccccatttacac |
45563779 |
T |
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