View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_high_48 (Length: 220)
Name: NF7179_high_48
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_high_48 |
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| [»] scaffold0482 (1 HSPs) |
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Alignment Details
Target: scaffold0482 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0482
Description:
Target: scaffold0482; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 916 - 1106
Alignment:
| Q |
19 |
gtaccttgctccaagattggtgctaatttggttccatagatccatgattcctctcccattaagacataccaaatggccataaccattgcaatgaatcaca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
916 |
gtaccttgctccaagattggtgctaatttggttccatagatccatgattcctctcccattaagacataccaaatggccataaccattgcaatgaatcaca |
1015 |
T |
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| Q |
119 |
ccatgatcatcaagagcttcttcatttaagggtttatgattgcccacccatcatccattgggattataaaatggtaccttctctatgatac |
209 |
Q |
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| T |
1016 |
ccatgatcatcaagagcttcttcatttaagggtttatgattgcccacccatcatccattgggattataaaatggtaccttctctatgatac |
1106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 7774350 - 7774160
Alignment:
| Q |
19 |
gtaccttgctccaagattggtgctaatttggttccatagatccatgattcctctcccattaagacataccaaatggccataaccattgcaatgaatcaca |
118 |
Q |
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| T |
7774350 |
gtaccttgctccaagattggtgctaatttggttccatagatccatgattcctctcccattaagacataccaaatggccataaccattgcaatgaatcaca |
7774251 |
T |
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| Q |
119 |
ccatgatcatcaagagcttcttcatttaagggtttatgattgcccacccatcatccattgggattataaaatggtaccttctctatgatac |
209 |
Q |
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| T |
7774250 |
ccatgatcatcaagagcttcttcatttaagggtttatgattgcccacccatcatccattgggattataaaatggtaccttctctatgatac |
7774160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 7790997 - 7790807
Alignment:
| Q |
19 |
gtaccttgctccaagattggtgctaatttggttccatagatccatgattcctctcccattaagacataccaaatggccataaccattgcaatgaatcaca |
118 |
Q |
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| T |
7790997 |
gtaccttgctccaagattggtgctaatttggttccatagatccatgattcctctcccattaagacataccaaatggccataaccattgcaatgaatcaca |
7790898 |
T |
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| Q |
119 |
ccatgatcatcaagagcttcttcatttaagggtttatgattgcccacccatcatccattgggattataaaatggtaccttctctatgatac |
209 |
Q |
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| T |
7790897 |
ccatgatcatcaagagcttcttcatttaagggtttatgattgcccacccatcatccattgggattataaaatggtaccttctctatgatac |
7790807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 7811582 - 7811392
Alignment:
| Q |
19 |
gtaccttgctccaagattggtgctaatttggttccatagatccatgattcctctcccattaagacataccaaatggccataaccattgcaatgaatcaca |
118 |
Q |
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| T |
7811582 |
gtaccttgctctaagattggtgctaatttggttccatagatccatgattcctctcccattaagacataccaaatggccataaccattgcaatgaatcaca |
7811483 |
T |
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| Q |
119 |
ccatgatcatcaagagcttcttcatttaagggtttatgattgcccacccatcatccattgggattataaaatggtaccttctctatgatac |
209 |
Q |
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| T |
7811482 |
ccatgatcatcaagagcttcttcatttaagggtttatgattgcccacccatcatccattgggattataaaatggtaccttctctatgatac |
7811392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 33184767 - 33184912
Alignment:
| Q |
74 |
ccattaagacataccaaatggccataaccattgcaatgaatcacaccatg---------------atcatcaagagcttcttcatttaagggtttatgat |
158 |
Q |
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| T |
33184767 |
ccattaagacataccaaatggccataaccattgcaatgaatcacaccatgtaatagatgactctgatcatcaagagcttcttcatttaagggtttatg-- |
33184864 |
T |
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| Q |
159 |
tgcccacccatcatccattgggattataaaatggtaccttctctatgatac |
209 |
Q |
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| T |
33184865 |
---ccacccatcatccattgggattataaaatggtaccttctctttgatac |
33184912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 33184684 - 33184745
Alignment:
| Q |
21 |
accttgctccaagattggtgctaatttggttccatagatccatgattcctctcccattaaga |
82 |
Q |
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| T |
33184684 |
accttgctctaagattggtgcaaattctgtcccatagatccatgatttctctcccactaaga |
33184745 |
T |
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