View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_high_49 (Length: 217)
Name: NF7179_high_49
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_high_49 |
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| [»] scaffold0072 (2 HSPs) |
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Alignment Details
Target: scaffold0072 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 28880 - 28957
Alignment:
| Q |
21 |
cttccaaccttttaaactctgactaaccttctaaactctgacttggttcataaactttcgtattctttgatcaattga |
98 |
Q |
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| T |
28880 |
cttccaaccttttaaacacggactaaccttctaaactctgactggattcataaactttcgtattctttgatcaattga |
28957 |
T |
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Target: scaffold0072; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 29154 - 29213
Alignment:
| Q |
126 |
agtccttaaaaaatcacctcacaaacacaccttaaagatataattaagtgtagccgtagt |
185 |
Q |
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| T |
29154 |
agtccttaaaaaatcacctcacaaacacaccttaaagatataattaagtgtagccgtagt |
29213 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 15989188 - 15989265
Alignment:
| Q |
21 |
cttccaaccttttaaactctgactaaccttctaaactctgacttggttcataaactttcgtattctttgatcaattga |
98 |
Q |
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| T |
15989188 |
cttcaaaccttctgaactctgactaaccttccgaactctgactgagttcataagctttaatgttctttgatcacttga |
15989265 |
T |
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