View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_high_7 (Length: 658)
Name: NF7179_high_7
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 12 - 606
Target Start/End: Original strand, 54429920 - 54430516
Alignment:
| Q |
12 |
gatggacatcactacatacacattacacataggctaaatgctccagtgttatataaaaaagtgagttcaatgtaaagtgatttaactttgactacattca |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54429920 |
gatgtacatcactacatacacattacacataggctaaatgctccagcgttatataaaaaagtgagttcaatgtaaagtgatttaactttgactacattca |
54430019 |
T |
|
| Q |
112 |
caataaaagtaagttgatatataaaagaattttagtgtcaaaaacttcatattcttgctttgaagaaagttggtacctttgggctacgagagtgagagag |
211 |
Q |
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| T |
54430020 |
caataaaagtaagttgatatataaaagaattttagagtcaaaaacttcatattcttgctttgaagaaagttggtacctttgggctacgagagtgagagag |
54430119 |
T |
|
| Q |
212 |
cgatcagagcagtgttgaatgcgaatctgaatgagaaagatatgagtccactgaacgatagattgaagcatggaatcgatcttggactcaaattggaggg |
311 |
Q |
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| T |
54430120 |
cgatcagagcagtgttgaatgcgaatctgaatgagaaagatatgagtccactgaacgatagattgaagcatggaatcgatcttggactcaaattggaggg |
54430219 |
T |
|
| Q |
312 |
tccactagcgagttgattcgaattggaaggtcatcggtaattcaagtggtttggggaagtaagggtcgagattgaataaagagtgaagagaaggttcttc |
411 |
Q |
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| T |
54430220 |
tccactagcgaggtgattcgaattggaaggtcatcggtaattcaagtggtttggggaagtaagggtcgagattgaataaagagtgaagagaaggttcttc |
54430319 |
T |
|
| Q |
412 |
cttaaaggcactgaaccatgatttacatacaagcattgcaccgtgccattgatcttcaacgctgagtcgaatgaagatgttgatgaggcaatctcgagat |
511 |
Q |
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| T |
54430320 |
cttaaaggcactgaaccatgatttacatacaagcattgcaccgcgccattgatcttcaacggtgagtcgaatgaagatgttgatgaggcaatctcgagat |
54430419 |
T |
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| Q |
512 |
aactcgccccatttggactctttttcttccaatttcttttg--nnnnnnnnnatatgaacttccatttccttttgtcaaacataatggatatggatg |
606 |
Q |
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| T |
54430420 |
aactcgccccatttggactctttttcttccaatttcttttgtttttttttttatatgaacttccatttccttttgtcaaacataatggatatggatg |
54430516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 173 - 332
Target Start/End: Complemental strand, 54425643 - 54425484
Alignment:
| Q |
173 |
gaagaaagttggtacctttgggctacgagagtgagagagcgatcagagcagtgttgaatgcgaatctgaatgagaaagatatgagtccactgaacgatag |
272 |
Q |
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| T |
54425643 |
gaagaaagtttgaacctttgggcaacaagagcgagagagcgatcagagcagtgtcgaatacgaatctgggtgaggaagatatgagtccattgaacgatag |
54425544 |
T |
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| Q |
273 |
attgaagcatggaatcgatcttggactcaaattggagggtccactagcgagttgattcga |
332 |
Q |
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| T |
54425543 |
aacgaagcatggaatcaatttgagattcgaattggagggtccaccagcgaggtgattcga |
54425484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 367 - 522
Target Start/End: Complemental strand, 54425473 - 54425318
Alignment:
| Q |
367 |
gaagtaagggtcgagattgaataaagagtgaagagaaggttcttccttaaaggcactgaaccatgatttacatacaagcattgcaccgtgccattgatct |
466 |
Q |
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||||||||| ||||| ||||||| |||||||||||| ||||||||||| ||||| ||||||||||||| || ||||||| | |||| ||||||||||| |
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| T |
54425473 |
gaagtaaggatcgaggttgaatacagagtgaagagatggttcttccttgaaggcgttgaaccatgatttgcaaacaagcaacgaaccgcgccattgatct |
54425374 |
T |
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| Q |
467 |
tcaacgctgagtcgaatgaagatgttgatgaggcaatctcgagataactcgcccca |
522 |
Q |
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| T |
54425373 |
tcaaagctgagtcgagataggatgttgatgaggcactcacgagtcaactcgcccca |
54425318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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