View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7179_low_10 (Length: 604)
Name: NF7179_low_10
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_low_10 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 17 - 604
Target Start/End: Complemental strand, 42005454 - 42004868
Alignment:
| Q |
17 |
acactctaacccttccaacttgatgagccttgaagcaagattgaaggtgagtggcgagccttctaattgttggcagtcactcttcaagctccaagcatgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42005454 |
acactctaacccttccaacttgatgagccttgaagcaagattgaaggtgagtggcgagccttctaattgttggcagtcactcttcaagctccaagcatgt |
42005355 |
T |
|
| Q |
117 |
agtggtgaaattataacattttttctaaatggtgagacttatttaggaaatggttgttgtaaagcaattagggttgttggacatgattgttggcctaata |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42005354 |
agtggtgaaattataacattttttctaaatggtgagacttatttaggaaatggttgttgtaaagcaattagggttattggacatgattgttggcctaata |
42005255 |
T |
|
| Q |
217 |
tggttgcttcgcttggattcaccaatgaagaatcttatatattggaaggttattgtgatgaagttgaggatgttcattcacctccaccacccacacctca |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42005254 |
tggttgcttcgcttggattcaccaatgaagaatcttatatattggaaggttattgtgatgaagttgaggatgttcattcacctccaccacccacaccaca |
42005155 |
T |
|
| Q |
317 |
agtatcatttgttgttgagcataaagagattgttccataaaagattattcttatgtaacattggtcttttatgattttcaatcaacacgtaataaaaaag |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42005154 |
agtatcatttgttgttgagcataaagagattgttccataaaagattattcttatgtaacattggtcttttatgattttcaattaacacgtaataaaaaag |
42005055 |
T |
|
| Q |
417 |
ttccaattttgtttctttaattaatttctttannnnnnnnnatgcatccttaatttatcctacttttaagcttttgatttttctaaactctgatccagtg |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42005054 |
ttccaattttgtttctttaattaatttcttta-ttttttttatgcatccttaatttatcttacttttaagcttttgatttttctaaactctgaaccagtg |
42004956 |
T |
|
| Q |
517 |
atgtgttatgcattttccatcaacttttcgtttgctctgtatatcaaaagttaatggtagtaagtgtttgatatggttatttattttt |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42004955 |
atgtgttatgcattttccatcaacttttcgttttctctgtatatcaaaagttaatggtagtaagtgtttgatatggttattgattttt |
42004868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 1e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 29 - 307
Target Start/End: Original strand, 18346154 - 18346435
Alignment:
| Q |
29 |
ttccaacttgatgagccttgaagcaagattgaaggtgagtggcga---gccttctaattgttggcagtcactcttcaagctccaagcatgtagtggtgaa |
125 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||| || ||||| |||||||||||||||||| |
|
|
| T |
18346154 |
ttccaatttgatgagccttgaagcaagattgaaggtgagtggtgatgagccttctaattgttgggagtcactatttaagcttcaagcatgtagtggtgaa |
18346253 |
T |
|
| Q |
126 |
attataacattttttctaaatggtgagacttatttaggaaatggttgttgtaaagcaattagggttgttggacatgattgttggcctaatatggttgctt |
225 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || || |||||||||| ||||||||||||||| |||||||||||||||||||||| | ||||| | |
|
|
| T |
18346254 |
attattacattttttctaaatggtgagacttacttgggctatggttgttgcaaagcaattagggttattggacatgattgttggcctaacgttgttgcat |
18346353 |
T |
|
| Q |
226 |
cgcttggattcaccaatgaagaatcttatatattggaaggttattgtgatgaagttgaggatgttcattcacctccaccacc |
307 |
Q |
| |
|
| ||||||||||| ||||||||| || || |||||||||||||||||||| | |||||||||||||||||||| |||||||| |
|
|
| T |
18346354 |
cacttggattcactaatgaagaaactgatttattggaaggttattgtgatcaggttgaggatgttcattcaccaccaccacc |
18346435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 29 - 307
Target Start/End: Original strand, 18357982 - 18358264
Alignment:
| Q |
29 |
ttccaacttgatgagccttgaagcaagattgaaggtgagtggcga---gccttctaattgttggcagtcactcttcaagctccaagcatgtagtgg-tga |
124 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||| || ||||| |||||||||||||| ||| |
|
|
| T |
18357982 |
ttccaatttgatgagccttgaagcaagattgaaggtgagtggtgatgagccttctaattgttgggagtcactatttaagcttcaagcatgtagtgggtga |
18358081 |
T |
|
| Q |
125 |
aattataacattttttctaaatggtgagacttatttaggaaatggttgttgtaaagcaattagggttgttggacatgattgttggcctaatatggttgct |
224 |
Q |
| |
|
|||| | |||||||||||||||||||||||||| || || |||||||||| ||||||||||||||| |||||||||||||||||||||| | ||||| |
|
|
| T |
18358082 |
aattgttacattttttctaaatggtgagacttacttgggctatggttgttgcaaagcaattagggttattggacatgattgttggcctaacgttgttgca |
18358181 |
T |
|
| Q |
225 |
tcgcttggattcaccaatgaagaatcttatatattggaaggttattgtgatgaagttgaggatgttcattcacctccaccacc |
307 |
Q |
| |
|
|| ||||||||||||||||||||| || || |||| ||||||||||||||| | |||||||||||||||||||| ||| |||| |
|
|
| T |
18358182 |
tcacttggattcaccaatgaagaaactgatgtattagaaggttattgtgatcaggttgaggatgttcattcaccaccatcacc |
18358264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University