View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7179_low_15 (Length: 454)
Name: NF7179_low_15
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 21 - 441
Target Start/End: Complemental strand, 32897909 - 32897491
Alignment:
| Q |
21 |
gacgactttgatattttctctccaattgttaaaatcaccacggttagagttgtattggatttagcttcaattaaaggttagcatctagaacaattagatg |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32897909 |
gacgactttgatattttctctccaattgttaaaatcagcacggttagagttgtattggatttagcttcaattaaaggttagcatctagaacaattagatg |
32897810 |
T |
|
| Q |
121 |
tcaacaatgtttcttaggctttgatggttcaacaaatgtgtgcaaattgcataaatctttatatggtttaaagcaagctagtgtggacaatggcactcta |
220 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
32897809 |
tcaacaatgtttcttaggctttgatggttgaacaaatgtgtgcaaattgcataaatctttatatggtttaaagcaagctagtg--gacaatggcattcta |
32897712 |
T |
|
| Q |
221 |
agctttcatcttctttttagtttccttgagatatgaacaatgtcaatctgatcattccattttattgtctttctagtgtttatttgttgatgatattgtg |
320 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32897711 |
agctttcatcttccttttagtttccttgagatatgaacaatgtcaatcttatcattccattttattgtctttctagtgtttatttgttgatgatattgtg |
32897612 |
T |
|
| Q |
321 |
ttagccggtagttctatacaagaaattcaggatgtcaaatatttcttcgatcaacaatttaaccttggtaagctgagatttttcttaggcttggagattg |
420 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32897611 |
ttagccggtagttctatgcaagaaattcaggatgtcaaatatttcttcgatcaacaatttaaccttggtaagctgagatttttcttaggcttggagattg |
32897512 |
T |
|
| Q |
421 |
ccaattcatacacatgcatct |
441 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32897511 |
ccaattcatacacatgcatct |
32897491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University