View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_low_16 (Length: 443)
Name: NF7179_low_16
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 22 - 426
Target Start/End: Original strand, 52760469 - 52760870
Alignment:
| Q |
22 |
tttaattctacaactctttccgaaacctggcaatttcataatgggaaataattatttatttgtgtaatatccacattcatactatatagctatcagttga |
121 |
Q |
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| T |
52760469 |
tttaattctacaactctttccgaaacctggcaatttcataatgggaaataattatttatttgtgtaatatccacattcatactatatagctatcagttga |
52760568 |
T |
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| Q |
122 |
gctcaattgcagataatattttgtctacctctgtcatcatctcaaattgtttactcaagtcatccgagaagggataacgatttgctccaaaagcatcaca |
221 |
Q |
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| T |
52760569 |
gctcaattgcagataatattttgtctacctctgtcatcatctcaaattgtttactcaagtcatccgagaagggataacgatttgctccaaaagcatcaca |
52760668 |
T |
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| Q |
222 |
aattttgttaattttacttttaactctctctcccgagtaaaatataataaatacatttttatgaacctgtaaaaggtagaagattaagaaagtattagtg |
321 |
Q |
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| T |
52760669 |
aattttgttaattttacttttaactctctctcccgagtaaaatataataaatacatttttatgaacctgtaaaaggtagaagattaagaaagtattagtg |
52760768 |
T |
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| Q |
322 |
actgatgagcatagaagactaattactaattggaacgaaagtaattaattagagactttagaatgagtaaccttctctcccgacaaaggatctagaacat |
421 |
Q |
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| T |
52760769 |
actgatgagcatagaagacta---actaattggaacgaaagtaattaattagagactttagaatgagtaaccttctctcccgacaaaggatctagaacat |
52760865 |
T |
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| Q |
422 |
gatgt |
426 |
Q |
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| T |
52760866 |
gatgt |
52760870 |
T |
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