View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_low_17 (Length: 441)
Name: NF7179_low_17
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 196 - 422
Target Start/End: Complemental strand, 40397367 - 40397141
Alignment:
| Q |
196 |
cttcaattttgaattatgtctagcaagttggcccgtcaattaatttgtatatgatttatcgtcaaattaatccttaaattacatcatttatcgtcaaatt |
295 |
Q |
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| T |
40397367 |
cttcaattttgaattatgtctagcaagttggctcgtcaattaatttgtatatgatttattgtcaaattaatccttaaattacatcatttatcgtcaaatt |
40397268 |
T |
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| Q |
296 |
agttctaactacaagttaacaaaatgataaaatcgatcgatgtcattcaaaatcagggtcatttttatctattcacgaatttcataggtgtaaatgtttc |
395 |
Q |
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| T |
40397267 |
agttctaactacaagttaacaaaatgataaaatcgatcgatgtcattcaaaatcagggtcatttttatatattcacgaatttcataggtgtaaatgtttc |
40397168 |
T |
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| Q |
396 |
gagcttacaatggatggagacttaatc |
422 |
Q |
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| T |
40397167 |
gagcttacaatggatggagacttaatc |
40397141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 40397552 - 40397393
Alignment:
| Q |
19 |
aaacaaaatcacacagacctcgagaccaacgccgatgaaagaatcaatttttaagtcctttgagtttctttggttcgaaaagatttttatattgaaaaat |
118 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40397552 |
aaacaaaatcacacagacctctagaccaacgccgatgaaagaatcaatttttaagtcctttgagtttctttgcttcgaaaagatttttatattgaaaaat |
40397453 |
T |
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| Q |
119 |
tgaataaatcacaaatttgcaagagtcagagatgtacaatcttaaaatttgcaaatagat |
178 |
Q |
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| T |
40397452 |
tgaataaatcacaaatttgcaagagtcaaagatgtacaatcttaaaatttgcaaatagat |
40397393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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