View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7179_low_2 (Length: 1083)

Name: NF7179_low_2
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7179_low_2
NF7179_low_2
[»] chr4 (8 HSPs)
chr4 (19-563)||(10110854-10111399)
chr4 (556-1072)||(10111424-10111937)
chr4 (924-1068)||(40002117-40002261)
chr4 (924-1068)||(13698386-13698530)
chr4 (924-1068)||(21301908-21302052)
chr4 (924-1068)||(54346251-54346395)
chr4 (924-1068)||(8982360-8982504)
chr4 (930-1068)||(36357195-36357333)
[»] scaffold0011 (1 HSPs)
scaffold0011 (924-1071)||(4914-5061)
[»] chr5 (5 HSPs)
chr5 (924-1071)||(13584789-13584936)
chr5 (924-1068)||(41856467-41856612)
chr5 (924-1068)||(24773432-24773576)
chr5 (924-1068)||(42022860-42023005)
chr5 (924-1068)||(17507950-17508093)
[»] chr8 (4 HSPs)
chr8 (924-1071)||(19433322-19433469)
chr8 (924-1071)||(19569472-19569619)
chr8 (924-1068)||(21646157-21646301)
chr8 (924-1068)||(32013574-32013718)
[»] chr6 (3 HSPs)
chr6 (924-1070)||(17284919-17285064)
chr6 (924-1072)||(10491015-10491163)
chr6 (924-1068)||(22700321-22700465)
[»] scaffold0517 (1 HSPs)
scaffold0517 (924-1068)||(1439-1583)
[»] scaffold0166 (1 HSPs)
scaffold0166 (924-1068)||(15816-15960)
[»] scaffold0165 (1 HSPs)
scaffold0165 (924-1068)||(14861-15005)
[»] scaffold0014 (1 HSPs)
scaffold0014 (924-1068)||(29421-29565)
[»] chr7 (4 HSPs)
chr7 (924-1068)||(33241051-33241195)
chr7 (924-1068)||(47996848-47996992)
chr7 (924-974)||(17498785-17498835)
chr7 (924-974)||(17554379-17554429)
[»] chr3 (5 HSPs)
chr3 (924-1068)||(3479022-3479166)
chr3 (924-1068)||(15765094-15765238)
chr3 (924-1068)||(17361953-17362097)
chr3 (924-1068)||(17366595-17366739)
chr3 (924-1068)||(20092725-20092869)
[»] chr2 (4 HSPs)
chr2 (924-1068)||(42725523-42725667)
chr2 (924-1068)||(44756675-44756819)
chr2 (927-1068)||(40035834-40035975)
chr2 (991-1068)||(27568706-27568786)
[»] chr1 (3 HSPs)
chr1 (924-1068)||(27714319-27714463)
chr1 (924-1068)||(37406491-37406635)
chr1 (924-1068)||(5727993-5728137)


Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 563
Target Start/End: Original strand, 10110854 - 10111399
Alignment:
Q  19 cttgacaaaacgagaaaatcaaggtgcaaaaaagtgcaaattcctagattcatgtcgttcatatctatgttgagcactgtaattttaaggaagtgcatat 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10110854 cttgacaaaacgagaacatcaaggtgcaaaaaagtgcaaattcctagattcatgtcgttcatatctatgttgagcactgtaattttaaggaagtgcatat 10110953  T
Q  119 acatatatcatgaatatggttacctattaacaggcatggttttccttctagtatccgccgtacaattttctagcacggcgttccggcaaactaccatggt 218  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  10110954 acatatatcatgaatatggatacctattaacaggcatggttttccttctagtatccgccgtacaattttccagcacggcgttccggcaaactaccgtggt 10111053  T
Q  219 ttccggcagggtttcacccatgacatcgatgatgggaaggcctgatcgctaggttgaaaggttataaattgttatggnnnnnnnnnnnnnnnnnnnnnnc 318  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||                      |    
T  10111054 ttccggcagggtttcacccatgacatcaatgatgggaaggcctgatcgctaggttgaaaggttataaattgttatggtttttttacactttttgtttttc 10111153  T
Q  319 aataaaaaatgcacaattactttgtcaa-ttttgtatcggcaagaattttgattgaggattatattccatttaatttagtttcttcattgttgttttgat 417  Q
    |||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10111154 aataaaaaattcacaattactttgtcaatttttgtatcgacaagaattttgattgaggattatattccatttaatttagtttcttcattgttgttttgat 10111253  T
Q  418 taattaatctatggtgtgttgtatggtgtaatgctacctattattacctagtttatgtttatggaatttacttgcaattatatatttttcataggtatgt 517  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||    
T  10111254 taattaatctatggtgtattgtatggtgtaatgctacctattattacctagtttatgtttatgtaatttacttgcaattatatatttttcatatatatgt 10111353  T
Q  518 ctctattgttcaaatttttgttgttctattgatcaacacacagtta 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10111354 ctctattgttcaaatttttgttgttctattgatcaacacacagtta 10111399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 556 - 1072
Target Start/End: Original strand, 10111424 - 10111937
Alignment:
Q  556 cacagttatttctttgaaggctagcacggaatgaaatagatttcatttgtttcatgtgtgctaagctaggttaaaatgaagaatctcaagccaataattt 655  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  10111424 cacaattatttctttgaaggctagcacggaatgaaatagatttcatttgtttcatgtgtgccaagctaggttaaaatgaagaatctcaagccaatcattt 10111523  T
Q  656 gtaaaagattttgtgtttgctttgtgttgaactaataaagcatcggaatttgaggatata-tactcttggtcgttgtttatgatttggttgcaaggtatt 754  Q
    |||||| | |||||||||||||||| |||||||||   |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10111524 gtaaaaaactttgtgtttgctttgtcttgaactaa---agcatcggaatttgaggatataatactcttggtcgttgtttatgatttggttgcaaggtatt 10111620  T
Q  755 catttattgcttatcattgtgttggtaagttgaaatttcttatgtaacatttatcccttcaagtacaaacaaatatgtggtcatggtaaggattgtgagt 854  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10111621 catttattgcttatcattgtgttggcaagttgaaatttcttatgtcacatttatcccttcaagtacaaacaaatatgtggtcatggtaaggattgtgagt 10111720  T
Q  855 taattaaagacattagtaaaccttttgtaaaagatttgatttgtttgcctttgaaggagatcaatgtcatcttagttttgggtactctgtttagcacata 954  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10111721 taattaaagacagcagtaaaccttttgtaaaagatttgatttgtttgcctttgaaggagatcaatgtcatcttagtttttggtactctgtttagcacata 10111820  T
Q  955 gctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactactaatttggtaaaggttcgattttttctttcg 1054  Q
    ||||||| ||||| ||||||  ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||     
T  10111821 gctaacagtcaatgaaattt-tccccaccaatgaggcgctgcatcagaattaagcatgatagcaactactaatttgataaaggtttgattttttctttcc 10111919  T
Q  1055 gctttaccgttcatctca 1072  Q
    ||||||||||||||||||    
T  10111920 gctttaccgttcatctca 10111937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 924 - 1068
Target Start/End: Original strand, 40002117 - 40002261
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  40002117 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 40002216  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| ||||||||||| |||||||||||| ||||||||||||||    
T  40002217 taattcggtaaaggttctattttttctttccgctttaccgttcat 40002261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 924 - 1068
Target Start/End: Original strand, 13698386 - 13698530
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  13698386 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 13698485  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  13698486 taattcggtaaacgttctattttttctttccgctttaccgttcat 13698530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 924 - 1068
Target Start/End: Complemental strand, 21302052 - 21301908
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  21302052 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 21301953  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  21301952 taattcggtaaacgttctattttttctttccgctttaccgttcat 21301908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 924 - 1068
Target Start/End: Original strand, 54346251 - 54346395
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  54346251 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 54346350  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  54346351 taattcggtaaacgttctattttttctttccgctttaccgttcat 54346395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 924 - 1068
Target Start/End: Complemental strand, 8982504 - 8982360
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||| ||||||| |||| ||||||||||||| ||||| ||||||||||||||  | |||||||||||  | ||||||||    
T  8982504 tctttgttttgggtactctgtttagaacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgcttcggaattaagcattgttgcaactac 8982405  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  8982404 taattcggtaaacgttctattttttctttccgctttaccgttcat 8982360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 930 - 1068
Target Start/End: Original strand, 36357195 - 36357333
Alignment:
Q  930 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactactaattt 1029  Q
    ||||||| ||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| |  |||||||||||  | |||||||||||||     
T  36357195 ttttgggaactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctctggaattaagcattgttgcaactactaattc 36357294  T
Q  1030 ggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    |||||| |||| |||||||||||| ||||||||||||||    
T  36357295 ggtaaacgttctattttttctttccgctttaccgttcat 36357333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 120; Significance: 8e-61; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 120; E-Value: 8e-61
Query Start/End: Original strand, 924 - 1071
Target Start/End: Original strand, 4914 - 5061
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    ||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  4914 tcttagtcttgggtactccgtttagcacatagctaacagtcaataaaatttccccccacaaatgaggcgctgcaccagaattaagcatgatagcaactac 5013  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcatctc 1071  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||    
T  5014 taattcggtaaaggttcgattttttctttccgctttaccgttcatctc 5061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 8e-61; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 8e-61
Query Start/End: Original strand, 924 - 1071
Target Start/End: Complemental strand, 13584936 - 13584789
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13584936 tcttcgttttgggtactctgtttagcacatagctaacagtcaataaaatttccccccaccaatgaggcgctgcaccagaattaagcatgatagcaactac 13584837  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcatctc 1071  Q
    || || ||||||||||||||| |||||||| |||||||||||||||||    
T  13584836 tagttcggtaaaggttcgattctttctttccgctttaccgttcatctc 13584789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 924 - 1068
Target Start/End: Original strand, 41856467 - 41856612
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||  | ||||||||    
T  41856467 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccagaattaagcattgttgcaactac 41856566  T
Q  1024 taatttggtaaaggttcga-ttttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| | ||||||||||| ||||||||||||||    
T  41856567 taattcggtaaacgttctatttttttctttccgctttaccgttcat 41856612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 924 - 1068
Target Start/End: Complemental strand, 24773576 - 24773432
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  24773576 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 24773477  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||  ||||||||||||||    
T  24773476 taattcggtaaacgttctattttttcttttcgctttaccgttcat 24773432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 924 - 1068
Target Start/End: Original strand, 42022860 - 42023005
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||| ||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  42022860 tctttgttttgggtactgtgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 42022959  T
Q  1024 taatttggtaaaggttcga-ttttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| | ||||||||||| ||||||||||||||    
T  42022960 taattcggtaaacgttctatttttttctttccgctttaccgttcat 42023005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 924 - 1068
Target Start/End: Original strand, 17507950 - 17508093
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| ||  ||||||||||  | ||||||||    
T  17507950 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccgaaattaagcattgttgcaactac 17508049  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||| | |||||| |||| | |||||||||| ||||||||||||||    
T  17508050 taactcggtaaacgttcta-tttttctttccgctttaccgttcat 17508093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 5e-56; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 924 - 1071
Target Start/End: Original strand, 19433322 - 19433469
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||| |||||||||||    
T  19433322 tcttagttttgggtactctgtttagcacatagctaacagtcaataaaattttcccccaccaatgaggcgttgcaccagaattaagcattatagcaactac 19433421  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcatctc 1071  Q
    ||||| |||||| |||||||| |||||||| |||||||||||||||||    
T  19433422 taattcggtaaaagttcgattctttctttccgctttaccgttcatctc 19433469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 924 - 1071
Target Start/End: Original strand, 19569472 - 19569619
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||| |||||||||||    
T  19569472 tcttagttttgggtactctgtttagcacatagctaacagtcaataaaattttcccccaccaatgaggcgttgcaccagaattaagcattatagcaactac 19569571  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcatctc 1071  Q
    ||||| |||||| |||||||| |||||||| |||||||||||||||||    
T  19569572 taattcggtaaaagttcgattctttctttccgctttaccgttcatctc 19569619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 924 - 1068
Target Start/End: Complemental strand, 21646301 - 21646157
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  21646301 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 21646202  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  21646201 taattcggtaaacgttctattttttctttccgctttaccgttcat 21646157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 924 - 1068
Target Start/End: Original strand, 32013574 - 32013718
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||| ||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  32013574 tctttgttttgggaactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 32013673  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  32013674 taattcggtaaatgttctattttttctttccgctttaccgttcat 32013718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 2e-55; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 924 - 1070
Target Start/End: Complemental strand, 17285064 - 17284919
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  17285064 tcttagttttgggcagtctgtttagcacatagctaacagtcaataaaatttccccc-accaatgaggcgctgcaccagaattaagcatgatagcacctac 17284966  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcatct 1070  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  17284965 taattcggtaaaggttcgattttttctttccgctttaccgttcatct 17284919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 924 - 1072
Target Start/End: Original strand, 10491015 - 10491163
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||||||||||||| |||  |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  10491015 tcttagttttgggtgctccatttagcacatagctaacagtcaataaaatttccccccaccaatgaggcgctgcaccataattaagcatgatagcaactac 10491114  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcatctca 1072  Q
    ||||| |||||| ||||||||||||||||  |||||| |||||||||||    
T  10491115 taattcggtaaaagttcgattttttcttttcgctttatcgttcatctca 10491163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 924 - 1068
Target Start/End: Complemental strand, 22700465 - 22700321
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  22700465 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 22700366  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  22700365 taattcggtaaacgttctattttttctttccgctttaccgttcat 22700321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 924 - 1068
Target Start/End: Original strand, 1439 - 1583
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  1439 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 1538  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  1539 taattcggtaaacgttctattttttctttccgctttaccgttcat 1583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 924 - 1068
Target Start/End: Complemental strand, 15960 - 15816
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  15960 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 15861  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  15860 taattcggtaaacgttctattttttctttccgctttaccgttcat 15816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 924 - 1068
Target Start/End: Original strand, 14861 - 15005
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  14861 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 14960  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  14961 taattcggtaaacgttctattttttctttccgctttaccgttcat 15005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 924 - 1068
Target Start/End: Original strand, 29421 - 29565
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  29421 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 29520  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  29521 taattcggtaaacgttctattttttctttccgctttaccgttcat 29565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 924 - 1068
Target Start/End: Original strand, 33241051 - 33241195
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  33241051 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 33241150  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  33241151 taattcggtaaacgttctattttttctttccgctttaccgttcat 33241195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 924 - 1068
Target Start/End: Original strand, 47996848 - 47996992
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  47996848 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 47996947  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  47996948 taattcggtaaacgttctattttttctttccgctttaccgttcat 47996992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 924 - 974
Target Start/End: Original strand, 17498785 - 17498835
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaattt 974  Q
    |||| ||||| |||||||||||||||||||||| |||| ||||||||||||    
T  17498785 tctttgttttaggtactctgtttagcacatagcaaacagtcaataaaattt 17498835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 924 - 974
Target Start/End: Complemental strand, 17554429 - 17554379
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaattt 974  Q
    |||| ||||| |||||||||||||||||||||| |||| ||||||||||||    
T  17554429 tctttgttttaggtactctgtttagcacatagcaaacagtcaataaaattt 17554379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 2e-42; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 924 - 1068
Target Start/End: Complemental strand, 3479166 - 3479022
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  3479166 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 3479067  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  3479066 taattcggtaaacgttctattttttctttccgctttaccgttcat 3479022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 924 - 1068
Target Start/End: Complemental strand, 15765238 - 15765094
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  15765238 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 15765139  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  15765138 taattcggtaaacgttctattttttctttccgctttaccgttcat 15765094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 924 - 1068
Target Start/End: Original strand, 17361953 - 17362097
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  17361953 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 17362052  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  17362053 taattcggtaaacgttctattttttctttccgctttaccgttcat 17362097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 924 - 1068
Target Start/End: Original strand, 17366595 - 17366739
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  17366595 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 17366694  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  17366695 taattcggtaaacgttctattttttctttccgctttaccgttcat 17366739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 924 - 1068
Target Start/End: Complemental strand, 20092869 - 20092725
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  20092869 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 20092770  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  20092769 taattcggtaaacgttctattttttctttccgctttaccgttcat 20092725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 2e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 924 - 1068
Target Start/End: Complemental strand, 42725667 - 42725523
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  42725667 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 42725568  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  42725567 taattcggtaaacgttctattttttctttccgctttaccgttcat 42725523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 924 - 1068
Target Start/End: Complemental strand, 44756819 - 44756675
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  44756819 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 44756720  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  44756719 taattcggtaaacgttctattttttctttccgctttaccgttcat 44756675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 927 - 1068
Target Start/End: Complemental strand, 40035975 - 40035834
Alignment:
Q  927 tagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactactaa 1026  Q
    ||||||||||||||||||||||||||| |  |||||||||||||||||| ||| | |||||||||| |||||   |||||||||||||| ||||||||||    
T  40035975 tagttttgggtactctgtttagcacatggaaaacaatcaataaaatttctcccgaccaatgaggcgatgcactgaaattaagcatgataacaactactaa 40035876  T
Q  1027 tttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    || ||||||||||| |||||||||||| ||| |||| |||||    
T  40035875 ttcggtaaaggttctattttttctttcagctctacctttcat 40035834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 991 - 1068
Target Start/End: Original strand, 27568706 - 27568786
Alignment:
Q  991 cgctgcaccagaattaagcatgatagcaactactaatttggtaaaggttcga---ttttttctttcggctttaccgttcat 1068  Q
    ||||||| | |||||||||||||||||||||| ||||| ||||||||||  |   |||||||| || ||||||||||||||    
T  27568706 cgctgcaacggaattaagcatgatagcaactaataattcggtaaaggttatatttttttttctctccgctttaccgttcat 27568786  T

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Target: chr1 (Bit Score: 89; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 924 - 1068
Target Start/End: Original strand, 27714319 - 27714463
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  27714319 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 27714418  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  27714419 taattcggtaaacgttctattttttctttccgctttaccgttcat 27714463  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 924 - 1068
Target Start/End: Complemental strand, 37406635 - 37406491
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||||  | |||||||||||  | ||||||||    
T  37406635 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgcttcggaattaagcattgttgcaactac 37406536  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  37406535 taattcggtaaacgttctattttttctttctgctttaccgttcat 37406491  T

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Target: chr1; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 924 - 1068
Target Start/End: Original strand, 5727993 - 5728137
Alignment:
Q  924 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 1023  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  5727993 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 5728092  T
Q  1024 taatttggtaaaggttcgattttttctttcggctttaccgttcat 1068  Q
    ||||| | ||||  ||| |||||||||||| ||||||||||||||    
T  5728093 taattcgataaacattctattttttctttccgctttaccgttcat 5728137  T

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