View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7179_low_20 (Length: 401)
Name: NF7179_low_20
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7179_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 6711553 - 6711163
Alignment:
| Q |
1 |
ttacttgctctaacacaagcaggttctttgatctgtactcttttcaacttcttctcttcatgtttacttcctgcaccttccttatcttgttttaggtttg |
100 |
Q |
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| T |
6711553 |
ttacttgctctaacacaagctggttctttgatctgtactcttttcaacttcttctcttcatgtttacttcctgcaccttccttatgttgttttaggtttg |
6711454 |
T |
|
| Q |
101 |
aagaattattggtagcaatctcggaatcttcgcaatctgaggaagatgtgaagcttttagcatcaccaccaacttcactattgttgtttctttgcttact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6711453 |
aagaattattggtagcaatctcggaatcttcgcaatctgaggaagatgtgaagcttttagcatcaccaccaacttcactattgttgtttctttgcttact |
6711354 |
T |
|
| Q |
201 |
tttagtcagatccttaattgctttcttagattttgtgaaaagccaatcaagtgtgttgctagctttgtcaaaccctaacatgtcttgaagatcgaagaat |
300 |
Q |
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| T |
6711353 |
cttagttagatccttaattgctttcttagattttgtgaaaagccaatcaagtgtgttgctagctttgtcaaaccctaacatgtcttgaagatcgaagaac |
6711254 |
T |
|
| Q |
301 |
tttcgagcgatctcaattgaaagcctcactcttcgatctctcaaaccttgagaagtgtaaatcttgctgtgtcggtctttcttcacaggtt |
391 |
Q |
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| T |
6711253 |
tttcgagcgatctcaatcgaaagcctcactcttcgatctctcaaaccttgagaagtgtaaatcttgctgtgtcggtctttcttcaccggtt |
6711163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 236 - 383
Target Start/End: Complemental strand, 6032184 - 6032037
Alignment:
| Q |
236 |
tgaaaagccaatcaagtgtgttgctagctttgtcaaaccctaacatgtcttgaagatcgaagaattttcgagcgatctcaattgaaagcctcactcttcg |
335 |
Q |
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|||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || | |||||||| || ||||| ||||| |||| |
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| T |
6032184 |
tgaagagccattcaagtgtgttgcttgctttgtcaaaccctaacatgtcttgaagatcgaagaacttcctcgcgatctcgatggaaagtctcacccttct |
6032085 |
T |
|
| Q |
336 |
atctctcaaaccttgagaagtgtaaatcttgctgtgtcggtctttctt |
383 |
Q |
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|||||||| |||||||| |||| ||||||||| || | ||||||||| |
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| T |
6032084 |
gtctctcaacccttgagatgtgtgaatcttgctatgcctgtctttctt |
6032037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 46795341 - 46795417
Alignment:
| Q |
228 |
agattttgtgaaaagccaatcaagtgtgttgctagctttgtcaaaccctaacatgtcttgaagatcgaagaattttc |
304 |
Q |
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|||||| ||||||||||| ||||||||||| || | |||||||||| ||||||| ||||||||||| ||||| |||| |
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| T |
46795341 |
agatttagtgaaaagccactcaagtgtgttacttggtttgtcaaactctaacatatcttgaagatcaaagaactttc |
46795417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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