View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7179_low_21 (Length: 397)

Name: NF7179_low_21
Description: NF7179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7179_low_21
NF7179_low_21
[»] chr2 (17 HSPs)
chr2 (19-376)||(39445286-39445644)
chr2 (158-257)||(35022619-35022718)
chr2 (158-277)||(2713422-2713541)
chr2 (178-271)||(35443507-35443600)
chr2 (158-257)||(24792001-24792101)
chr2 (158-257)||(22440138-22440237)
chr2 (161-257)||(815008-815104)
chr2 (158-276)||(20555444-20555568)
chr2 (179-302)||(15690187-15690309)
chr2 (197-276)||(20128323-20128402)
chr2 (207-269)||(37978494-37978556)
chr2 (158-262)||(20211470-20211574)
chr2 (158-276)||(13081932-13082056)
chr2 (158-235)||(34233917-34233994)
chr2 (177-277)||(11944887-11944987)
chr2 (158-274)||(24762709-24762825)
chr2 (171-257)||(43791922-43792009)
[»] chr7 (9 HSPs)
chr7 (156-274)||(46726131-46726249)
chr7 (163-269)||(47639184-47639290)
chr7 (171-274)||(2959582-2959685)
chr7 (160-264)||(42258897-42259003)
chr7 (160-257)||(44543734-44543831)
chr7 (178-274)||(36939466-36939562)
chr7 (158-219)||(19559936-19559997)
chr7 (183-241)||(4133810-4133868)
chr7 (225-277)||(25120219-25120271)
[»] chr4 (19 HSPs)
chr4 (156-274)||(30624691-30624809)
chr4 (158-275)||(13800691-13800808)
chr4 (158-274)||(31072464-31072581)
chr4 (171-275)||(16555961-16556065)
chr4 (173-249)||(48315944-48316020)
chr4 (158-301)||(41415746-41415889)
chr4 (173-276)||(11260550-11260653)
chr4 (177-276)||(12618708-12618807)
chr4 (158-271)||(32692947-32693061)
chr4 (182-274)||(54552765-54552857)
chr4 (158-245)||(14948982-14949069)
chr4 (171-277)||(24981784-24981890)
chr4 (158-274)||(10099357-10099474)
chr4 (158-281)||(5798981-5799104)
chr4 (173-275)||(52650700-52650802)
chr4 (196-274)||(53391267-53391345)
chr4 (158-273)||(51105918-51106033)
chr4 (158-251)||(14603738-14603831)
chr4 (225-269)||(45520683-45520727)
[»] chr1 (12 HSPs)
chr1 (158-269)||(27004018-27004129)
chr1 (158-276)||(45775850-45775965)
chr1 (158-274)||(46803510-46803626)
chr1 (182-276)||(43024932-43025026)
chr1 (158-274)||(46087092-46087207)
chr1 (158-273)||(9534368-9534483)
chr1 (171-258)||(26756194-26756281)
chr1 (182-273)||(27542856-27542948)
chr1 (215-268)||(16790297-16790350)
chr1 (215-276)||(32572789-32572850)
chr1 (201-273)||(15458417-15458489)
chr1 (154-274)||(17554853-17554973)
[»] chr3 (13 HSPs)
chr3 (158-274)||(28874487-28874603)
chr3 (158-278)||(48811363-48811483)
chr3 (158-274)||(40425110-40425226)
chr3 (178-274)||(4305157-4305253)
chr3 (158-257)||(48602255-48602355)
chr3 (158-271)||(34591084-34591197)
chr3 (160-256)||(32071127-32071223)
chr3 (182-274)||(38723235-38723327)
chr3 (158-274)||(45529114-45529230)
chr3 (130-257)||(25753497-25753624)
chr3 (183-258)||(38156524-38156598)
chr3 (171-277)||(2831539-2831645)
chr3 (183-274)||(53038273-53038365)
[»] chr8 (10 HSPs)
chr8 (158-258)||(16459254-16459354)
chr8 (158-273)||(24733168-24733283)
chr8 (156-276)||(15353763-15353883)
chr8 (178-273)||(44253803-44253897)
chr8 (182-269)||(29217548-29217635)
chr8 (191-273)||(8674455-8674537)
chr8 (152-278)||(35209921-35210047)
chr8 (200-273)||(9200033-9200106)
chr8 (154-277)||(39691105-39691228)
chr8 (227-272)||(9735368-9735413)
[»] chr5 (8 HSPs)
chr5 (131-235)||(27536668-27536772)
chr5 (178-274)||(2827579-2827675)
chr5 (158-269)||(12198196-12198306)
chr5 (158-248)||(231314-231404)
chr5 (182-274)||(30370876-30370967)
chr5 (156-274)||(41583538-41583656)
chr5 (171-274)||(24173176-24173279)
chr5 (178-234)||(8453890-8453946)
[»] chr6 (4 HSPs)
chr6 (158-296)||(15588628-15588766)
chr6 (178-287)||(6555053-6555162)
chr6 (158-228)||(4806498-4806568)
chr6 (160-228)||(2963255-2963323)
[»] scaffold0005 (1 HSPs)
scaffold0005 (158-251)||(213547-213640)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 39445286 - 39445644
Alignment:
Q  19 gcacattcatgacaagatgttactcactcaagctatgcttgaccaaagcttgaaatgnnnnnnnnnncaatttttccttgcagcaaagctgcttcgaata 118  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||          || |||||||||||||||||||||||  |||||    
T  39445286 gcacattcacgacaagatgttactcactcaagctatgcttgaccaaagcttgaaatgaaaaataaacca-tttttccttgcagcaaagctgctctgaata 39445384  T
Q  119 tt-attaaatgtgaaatattaatgagt-gtctttagagtattctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaa 216  Q
    || |||||||  |||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||    
T  39445385 tttattaaataagaaatattaacgagttgtctttggagtattctttaagaaccattaatattaagtttgtaagaaaaactgtgtaatcagtgcattgaaa 39445484  T
Q  217 tttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagtgtcttagaaacatttgttaacaaaactcgtatcaaatatatgc 316  Q
    ||| |||||||| |||||| |||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| | || ||||||||||||||    
T  39445485 tttctaacatttaacttttttaaaaaatattttttaaatttaaaatctttaaagagtgtctcagagacatttgttaacaagattcatatcaaatatatgc 39445584  T
Q  317 atcaggctaatacacatagtcaaacaatgaaacaaagccaatcaaccgcaacatgaaaaa 376  Q
    || ||||||||||||||||||||||| ||||||||||||||| ||||  |||||||||||    
T  39445585 attaggctaatacacatagtcaaacattgaaacaaagccaataaaccaaaacatgaaaaa 39445644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 158 - 257
Target Start/End: Complemental strand, 35022718 - 35022619
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    |||||||| |||||||||  ||||||||||| ||||  |||||||||| ||||||||||||| ||| ||||||||||| ||| |||||||||||||||||    
T  35022718 tctttaaggaccattaattgtaagtttttattaaaatatgtgtaatcaatgcattaaaatttataatatttgacttttttaagaaatattttttaaattt 35022619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 158 - 277
Target Start/End: Original strand, 2713422 - 2713541
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    |||||||  ||| |||||| |||||||| ||||||| |||| |||||| ||||||  ||||||||||||||||||||| | || ||||||||  ||||||    
T  2713422 tctttaaacacctttaatagtaagttttgatgaaaatctgtataatcattgcattggaatttgtaacatttgacttttttgaagaatattttccaaattt 2713521  T
Q  258 agaatctttaaagagtgtct 277  Q
    |  |||||||||||||||||    
T  2713522 atgatctttaaagagtgtct 2713541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 178 - 271
Target Start/End: Original strand, 35443507 - 35443600
Alignment:
Q  178 taagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaaga 271  Q
    ||||||||||  ||||  |||||||||||||||||||||||| ||||||||||||||| | | |||||||||||||||||  |||| |||||||    
T  35443507 taagtttttacaaaaatttgtgtaatcagtgcattaaaatttataacatttgacttttttgagaaatattttttaaatttgaaatccttaaaga 35443600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 158 - 257
Target Start/End: Complemental strand, 24792101 - 24792001
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaac-tgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatt 256  Q
    ||||||||||||||||||| ||||||||||| ||||   | |||||||| ||||||  ||||||||||||||||||||| |||| |||||||| ||||||    
T  24792101 tctttaagaaccattaatagtaagtttttataaaaattatatgtaatcaatgcattggaatttgtaacatttgacttttttaaagaatattttctaaatt 24792002  T
Q  257 t 257  Q
    |    
T  24792001 t 24792001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 158 - 257
Target Start/End: Original strand, 22440138 - 22440237
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    |||||||| ||| |||||| ||||||||||||||||  | |||||||| |||||| ||| ||||||||||||| |||| | || |||||||| |||||||    
T  22440138 tctttaagtacctttaatagtaagtttttatgaaaatatatgtaatcaatgcattgaaacttgtaacatttgaattttttgaagaatattttctaaattt 22440237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 815104 - 815008
Alignment:
Q  161 ttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    ||||| ||| |||| | |||||||||||||||| | ||||||||| ||||||  ||||||| |||||||| |||| ||||||||| ||| |||||||    
T  815104 ttaagcacctttaaaagtaagtttttatgaaaatcggtgtaatcaatgcattggaatttgtgacatttgatttttttaaaaaataatttctaaattt 815008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 276
Target Start/End: Original strand, 20555444 - 20555568
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaa-----aaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaa-aaatatttttt 251  Q
    ||||||||||||||||||| ||| ||||||| ||     ||| |||||||||| || |||  ||||| |||||||| |||||| | || |||||||||||    
T  20555444 tctttaagaaccattaataataactttttataaatacaaaaaatgtgtaatcaatgtattggaatttataacatttaactttttttaataaatatttttt 20555543  T
Q  252 aaatttagaatctttaaagagtgtc 276  Q
    || ||||||||||||| ||||||||    
T  20555544 aattttagaatctttatagagtgtc 20555568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 302
Target Start/End: Original strand, 15690187 - 15690309
Alignment:
Q  179 aagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagtgtctt 278  Q
    |||||||||| ||||  |||||||||| ||||||||||||||||| |||||| |||| | | ||||||||| | |||||    || ||||||||||||||    
T  15690187 aagtttttataaaaatatgtgtaatcaatgcattaaaatttgtaatatttgatttttttgagaaatattttcttaatttgagttccttaaagagtgtctt 15690286  T
Q  279 agaaacatttgttaacaaaactcg 302  Q
     || | |||||||||||| |||||    
T  15690287 -gagagatttgttaacaagactcg 15690309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 276
Target Start/End: Complemental strand, 20128402 - 20128323
Alignment:
Q  197 gtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagtgtc 276  Q
    ||||||||| ||||||  ||||||||||||||||||||| |||| ||||  || ||||||||| ||| ||||||||||||    
T  20128402 gtgtaatcaatgcattggaatttgtaacatttgacttttttaaagaataaattataaatttaggatccttaaagagtgtc 20128323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 207 - 269
Target Start/End: Complemental strand, 37978556 - 37978494
Alignment:
Q  207 tgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaa 269  Q
    ||||||||||||||||| ||||||||||| |||| |||||||| ||||||| | |||||||||    
T  37978556 tgcattaaaatttgtaatatttgacttttttaaagaatattttctaaatttgggatctttaaa 37978494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 20211470 - 20211574
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    ||||||| || |||||||| ||  |||| || ||||| |||||||| | || ||| ||||||||||||||||| || | |||| ||||||||||||||||    
T  20211470 tctttaaaaatcattaataatatattttcataaaaaattgtgtaattaatgtattgaaatttgtaacatttgatttatttaaagaatattttttaaattt 20211569  T
Q  258 agaat 262  Q
     ||||    
T  20211570 ggaat 20211574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 276
Target Start/End: Complemental strand, 13082056 - 13081932
Alignment:
Q  158 tctttaagaaccattaatattaagtttttat------gaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatatttttt 251  Q
    ||||||||||||||||||| |||||||||||       |||||||| ||||||| || |||| ||||||||||| || |||||| |||  | |||||| |    
T  13082056 tctttaagaaccattaatagtaagtttttataaaaaaaaaaaactgagtaatcaatgtattagaatttgtaacacttaacttttttaatgattattttat 13081957  T
Q  252 aaatttagaatctttaaagagtgtc 276  Q
    ||||||   ||| ||||||||||||    
T  13081956 aaatttgagatccttaaagagtgtc 13081932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 34233917 - 34233994
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgactttt 235  Q
    |||||||| ||| |||||| ||| |||||||  |||  |||||||||| |||||| |||||||||| |||||||||||    
T  34233917 tctttaagcacctttaatagtaaatttttattcaaatttgtgtaatcaatgcattgaaatttgtaatatttgactttt 34233994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 277
Target Start/End: Original strand, 11944887 - 11944987
Alignment:
Q  177 ttaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagtgtc 276  Q
    |||||||||||||||||  |||||| ||| |||||| ||| |||||| | ||||| ||| | ||||||| ||  |||| |||| ||| ||||||||||||    
T  11944887 ttaagtttttatgaaaagttgtgtattcaatgcattgaaaattgtaatagttgacattttttaaaaataattactaaaattaggatccttaaagagtgtc 11944986  T
Q  277 t 277  Q
    |    
T  11944987 t 11944987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 274
Target Start/End: Original strand, 24762709 - 24762825
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    |||||||| ||||||  || ||||||||||| ||||  ||| |||||| |  |||  ||||||||| ||||||||||| |||  |||||||| |||||||    
T  24762709 tctttaaggaccatttctagtaagtttttataaaaatatgtataatcaatatattggaatttgtaatatttgacttttttaaggaatattttctaaattt 24762808  T
Q  258 agaatctttaaagagtg 274  Q
     | ||| ||||||||||    
T  24762809 gggatccttaaagagtg 24762825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 43791922 - 43792009
Alignment:
Q  171 ttaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttga-cttttataaaaaatattttttaaattt 257  Q
    |||||| ||||||||||| |||| || | |||| | ||||||| ||||||||||||||||  |||| |||| ||||||||| ||||||    
T  43791922 ttaataataagtttttataaaaatctatataattaatgcattagaatttgtaacatttgattttttttaaagaatatttttaaaattt 43792009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 46726249 - 46726131
Alignment:
Q  156 attctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaat 255  Q
    ||||||||| ||||||||||| ||| ||||||||||||||| |||||||| |||||| |||||||||||||||||||||| |||| ||||||||||||||    
T  46726249 attctttaaaaaccattaatagtaaatttttatgaaaaactatgtaatcaatgcattgaaatttgtaacatttgacttttttaaagaatattttttaaat 46726150  T
Q  256 ttagaatctttaaagagtg 274  Q
    || | ||| ||||||||||    
T  46726149 ttggtatccttaaagagtg 46726131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 47639290 - 47639184
Alignment:
Q  163 aagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaat 262  Q
    |||||||||||||| |||  |||||| ||||| |||||||||| | |||||||||||||||||||| | |||| |||| |||||||||||||||||| ||    
T  47639290 aagaaccattaatagtaaacttttataaaaaattgtgtaatcaatacattaaaatttgtaacatttaatttttttaaagaatattttttaaatttaggat 47639191  T
Q  263 ctttaaa 269  Q
    | |||||    
T  47639190 ccttaaa 47639184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 171 - 274
Target Start/End: Original strand, 2959582 - 2959685
Alignment:
Q  171 ttaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaag 270  Q
    |||||| ||| ||||||||||||| | |||||||| ||||||||||||| |||||||| ||||||  |||||||||||||| ||||||  ||| ||||||    
T  2959582 ttaataataaatttttatgaaaaattatgtaatcaatgcattaaaatttataacatttaactttttcaaaaaatatttttttaatttatgatccttaaag 2959681  T
Q  271 agtg 274  Q
    ||||    
T  2959682 agtg 2959685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 264
Target Start/End: Complemental strand, 42259003 - 42258897
Alignment:
Q  160 tttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaa--atttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||| | |||||||   |||||||||||| ||||||  ||| |||||||| |||||||    
T  42259003 tttaagaaccattaatgataagtttttatgaaaaattgtgtaatcaatacattaaattttttgtaacatttaactttttaaaagaatattttctaaattt 42258904  T
Q  258 agaatct 264  Q
    |||||||    
T  42258903 agaatct 42258897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 257
Target Start/End: Complemental strand, 44543831 - 44543734
Alignment:
Q  160 tttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    |||||||| ||||||||  || ||||||| ||||| |||||||||| ||||||  ||||| ||||||||||| ||| || | ||||||||||||||||    
T  44543831 tttaagaatcattaatagaaattttttataaaaaaatgtgtaatcaatgcatttgaatttataacatttgacatttttatagaatattttttaaattt 44543734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 274
Target Start/End: Complemental strand, 36939562 - 36939466
Alignment:
Q  178 taagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagtg 274  Q
    |||||||||||| |||  |||||||| | |||| | |||||||||||||||||||||| | |  |||||||||||||||||  ||| ||||||||||    
T  36939562 taagtttttatgtaaatttgtgtaattaatgcactgaaatttgtaacatttgacttttttgaggaatattttttaaatttaagatccttaaagagtg 36939466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 19559936 - 19559997
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaattt 219  Q
    ||||||||||||||||||| ||||||||||||| ||| | |||||||| ||| || ||||||    
T  19559936 tctttaagaaccattaatagtaagtttttatgagaaaatatgtaatcaatgcgttgaaattt 19559997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 4133810 - 4133868
Alignment:
Q  183 ttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaa 241  Q
    ||||||||||| || | |||||| |||||| ||||||||||||||||| |||| |||||    
T  4133810 ttttatgaaaatctttataatcaatgcattgaaatttgtaacatttgatttttttaaaa 4133868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 25120219 - 25120271
Alignment:
Q  225 atttgacttttataaaaaatattttttaaatttagaatctttaaagagtgtct 277  Q
    ||||||||||| ||||||||| ||| | |||||  ||||||||||||||||||    
T  25120219 atttgacttttttaaaaaataatttattaatttgaaatctttaaagagtgtct 25120271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 30624809 - 30624691
Alignment:
Q  156 attctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaat 255  Q
    ||||||||| ||||||||||| ||||||||||||||||||| |||||| |||||||| ||||||||||| |||||||||| |||| ||||||||| ||||    
T  30624809 attctttaaaaaccattaataataagtttttatgaaaaactatgtaattagtgcattgaaatttgtaacttttgacttttttaaacaatatttttaaaat 30624710  T
Q  256 ttagaatctttaaagagtg 274  Q
    ||  |||| ||||||||||    
T  30624709 ttgaaatccttaaagagtg 30624691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 158 - 275
Target Start/End: Original strand, 13800691 - 13800808
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||||| || ||   ||||||||| ||||||||||| |||| |||||||| |||||||    
T  13800691 tctttaagaaccattaatagtaactttctatgaaaaactgtgtaatcaatgtataggaatttgtaatatttgacttttttaaagaatattttctaaattt 13800790  T
Q  258 agaatctttaaagagtgt 275  Q
    || ||| |||||||||||    
T  13800791 aggatccttaaagagtgt 13800808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 158 - 274
Target Start/End: Original strand, 31072464 - 31072581
Alignment:
Q  158 tctttaagaaccattaatattaagttttt-atgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatt 256  Q
    |||||||||| |||||||||||| ||||| || |||||||||||||||| |||||   |||||||||||||||||||||  ||| |||||||| ||||||    
T  31072464 tctttaagaatcattaatattaacttttttataaaaaactgtgtaatcaatgcataggaatttgtaacatttgactttttcaaagaatattttctaaatt 31072563  T
Q  257 tagaatctttaaagagtg 274  Q
    ||  ||| ||||||||||    
T  31072564 tatgatccttaaagagtg 31072581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 171 - 275
Target Start/End: Complemental strand, 16556065 - 16555961
Alignment:
Q  171 ttaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaag 270  Q
    |||||| ||||||||||| ||||  |||||||||| |||||| |||||||||| |||||| | || ||| ||||||||| |||||||||||| |||||||    
T  16556065 ttaataataagtttttataaaaatttgtgtaatcaatgcattgaaatttgtaatatttgaatgttgtaagaaatattttctaaatttagaatttttaaag 16555966  T
Q  271 agtgt 275  Q
    |||||    
T  16555965 agtgt 16555961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 48316020 - 48315944
Alignment:
Q  173 aatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatatttt 249  Q
    |||||||||||||||||||||  |||||||||| |||||| |||||||||||||||||||||| |||| ||||||||    
T  48316020 aatattaagtttttatgaaaagttgtgtaatcaatgcattgaaatttgtaacatttgacttttttaaagaatatttt 48315944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 158 - 301
Target Start/End: Original strand, 41415746 - 41415889
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    ||||||||||||||||||| ||| ||||||| ||||| ||| |||||| ||||||  |||||||||| | |||||||| |||| |||||||| || ||||    
T  41415746 tctttaagaaccattaatagtaaatttttataaaaaattgtttaatcaatgcattgtaatttgtaacttgtgacttttttaaagaatattttctatattt 41415845  T
Q  258 agaatctttaaagagtgtcttagaaacatttgttaacaaaactc 301  Q
     ||||| ||||| | |||| | || ||| | |||||||||||||    
T  41415846 ggaatccttaaaaaatgtcctggagacactcgttaacaaaactc 41415889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 276
Target Start/End: Complemental strand, 11260653 - 11260550
Alignment:
Q  173 aatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagag 272  Q
    |||| ||| ||| ||||||||  | |||||||| |||||| |||||||||||||||||||||| |||| |||||||||||||||||  || |||||| ||    
T  11260653 aatagtaaatttatatgaaaatatatgtaatcattgcattgaaatttgtaacatttgacttttttaaagaatattttttaaatttaagatgtttaaaaag 11260554  T
Q  273 tgtc 276  Q
    ||||    
T  11260553 tgtc 11260550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 177 - 276
Target Start/End: Original strand, 12618708 - 12618807
Alignment:
Q  177 ttaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagtgtc 276  Q
    |||||||||||||||||  ||| |||||| |||||| |||||| |||||||||||||||  |||||||| ||| ||||||| ||||  ||||||||||||    
T  12618708 ttaagtttttatgaaaatttgtataatcaatgcattgaaatttataacatttgactttttaaaaaaataatttctaaatttggaatgcttaaagagtgtc 12618807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 271
Target Start/End: Original strand, 32692947 - 32693061
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgac-ttttataaaaaatattttttaaatt 256  Q
    |||||||| |||||||||| ||||||||||||||||  |||||||||| || ||| |||||||||||||||  | |||| |||  ||||||||||| |||    
T  32692947 tctttaaggaccattaatagtaagtttttatgaaaatatgtgtaatcaatgtattgaaatttgtaacatttacctttttttaaggaatattttttatatt 32693046  T
Q  257 tagaatctttaaaga 271  Q
    | | |||||||||||    
T  32693047 tgggatctttaaaga 32693061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 274
Target Start/End: Original strand, 54552765 - 54552857
Alignment:
Q  182 tttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagtg 274  Q
    |||||| ||||||||||||||||| || || | ||||||||||||||||| ||| |||| |||||||| ||||||||| ||  ||||||||||    
T  54552765 tttttacgaaaaactgtgtaatcaatgtataagaatttgtaacatttgacctttttaaagaatattttctaaatttaggattcttaaagagtg 54552857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 158 - 245
Target Start/End: Original strand, 14948982 - 14949069
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaata 245  Q
    |||||||| ||  ||||||  |||||||||||||||  |||||||||| |||||| |||||||||||||||||||||| |||| ||||    
T  14948982 tctttaagcacttttaataacaagtttttatgaaaatttgtgtaatcaatgcattgaaatttgtaacatttgacttttttaaagaata 14949069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 277
Target Start/End: Complemental strand, 24981890 - 24981784
Alignment:
Q  171 ttaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaag 270  Q
    |||||||||||   || ||||||| |||||||||| ||||||  |||||||||| ||| |||||| |||| |||||||| |||||||  ||||||||||     
T  24981890 ttaatattaagaaattgtgaaaaattgtgtaatcaatgcatttgaatttgtaacgtttaacttttttaaagaatattttctaaatttgaaatctttaaaa 24981791  T
Q  271 agtgtct 277  Q
    |||||||    
T  24981790 agtgtct 24981784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 10099474 - 10099357
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttat-aaaaaatattttttaaatt 256  Q
    |||||||| ||| ||| || ||| || |||||||||  |||||||| | || ||| |||||||||| |||||| |||| | |||||||||||||||||||    
T  10099474 tctttaagcacctttattagtaatttcttatgaaaatttgtgtaattaatgtattgaaatttgtaaaatttgaatttttttaaaaaatattttttaaatt 10099375  T
Q  257 tagaatctttaaagagtg 274  Q
    || ||| |||||||||||    
T  10099374 taaaatttttaaagagtg 10099357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 281
Target Start/End: Original strand, 5798981 - 5799104
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    |||| ||||||| |||||| ||| ||||||| ||||  ||| ||||||  ||||| |||||||||| |||||||||||  ||| |||||||| |||||||    
T  5798981 tcttcaagaacctttaataataaatttttataaaaatttgtataatcaacgcatttaaatttgtaatatttgactttttaaaagaatattttctaaattt 5799080  T
Q  258 agaatctttaaagagtgtcttaga 281  Q
    |  ||| |||| |||| |||||||    
T  5799081 aagatccttaaggagtatcttaga 5799104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 275
Target Start/End: Original strand, 52650700 - 52650802
Alignment:
Q  173 aatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagag 272  Q
    |||| ||| ||||||||||||| ||||||||||||| ||| ||| ||| ||  |||||| ||| |||| |||| ||| | ||||||| || |||||||||    
T  52650700 aatagtaattttttatgaaaaattgtgtaatcagtgaattgaaaattgaaaattttgacatttgtaaagaataatttcttaatttagcatgtttaaagag 52650799  T
Q  273 tgt 275  Q
    |||    
T  52650800 tgt 52650802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 53391267 - 53391345
Alignment:
Q  196 tgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagtg 274  Q
    |||| ||||| |||||| |||||||||||||||||||| | | || |||||||| ||||||||| ||  ||||||||||    
T  53391267 tgtgcaatcaatgcattgaaatttgtaacatttgacttcttttaagaatattttctaaatttagtattcttaaagagtg 53391345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 273
Target Start/End: Complemental strand, 51106033 - 51105918
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    |||||||||||||| |||| ||| | ||||||||||  || |||||| ||| ||| ||| ||  || ||||||||||| |||| |||| || || | |||    
T  51106033 tctttaagaaccataaatagtaactatttatgaaaatatgcgtaatccgtgtattgaaaattaaaatatttgacttttttaaataataattgtttatttt 51105934  T
Q  258 agaatctttaaagagt 273  Q
    ||||| ||||||||||    
T  51105933 agaatatttaaagagt 51105918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 14603738 - 14603831
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatatttttt 251  Q
    |||||||| ||| |||||| | || ||||||||||   |||||| |||  ||||| ||| |||||| |||||| |||| |||||||||||||||    
T  14603738 tctttaaggacctttaatagtgagattttatgaaagtttgtgtattcaacgcattgaaacttgtaatatttgaattttttaaaaaatatttttt 14603831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 269
Target Start/End: Original strand, 45520683 - 45520727
Alignment:
Q  225 atttgacttttataaaaaatattttttaaatttagaatctttaaa 269  Q
    ||||||||||| |||| ||||  ||||||||||||||||||||||    
T  45520683 atttgacttttttaaacaataaattttaaatttagaatctttaaa 45520727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 158 - 269
Target Start/End: Original strand, 27004018 - 27004129
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    |||||||||| |||||||| ||| |||||| |||||| |||||||||| |||||| |||||  |||||||| |||||| |||||||||||||||||||||    
T  27004018 tctttaagaatcattaataataaatttttaagaaaaattgtgtaatcaatgcattgaaattgataacatttaacttttttaaaaaatattttttaaattt 27004117  T
Q  258 agaatctttaaa 269  Q
    || |||||||||    
T  27004118 aggatctttaaa 27004129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 158 - 276
Target Start/End: Complemental strand, 45775965 - 45775850
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    |||||||||| ||||||||  ||||||||||||||||||||||||||   |||||  ||||||||||||||  |||||  ||  ||||||||||||||||    
T  45775965 tctttaagaatcattaatagcaagtttttatgaaaaactgtgtaatc---gcattggaatttgtaacatttatctttttaaaggaatattttttaaattt 45775869  T
Q  258 agaatctttaaagagtgtc 276  Q
    || ||| ||||||||||||    
T  45775868 aggatccttaaagagtgtc 45775850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 46803626 - 46803510
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    |||||||| ||| |||||| ||| |||||| |||||  |||||||||| |||||| ||||| ||||| |||||||||||||||||||| ||| ||||||     
T  46803626 tctttaagcacctttaatagtaactttttaagaaaatatgtgtaatcaatgcattgaaattagtaacgtttgacttttataaaaaatactttctaaatta 46803527  T
Q  258 agaatctttaaagagtg 274  Q
     ||||| ||||||||||    
T  46803526 ggaatccttaaagagtg 46803510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 43024932 - 43025026
Alignment:
Q  182 tttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagtgtc 276  Q
    ||||||||||||   |||||||||||||||| |||||||||| |||| | |||| |||| |||||||||||||| ||| ||| ||||||||||||    
T  43024932 tttttatgaaaatacgtgtaatcagtgcattgaaatttgtaatatttaatttttttaaataatattttttaaatataggatccttaaagagtgtc 43025026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 46087207 - 46087092
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    |||||||| ||| ||||||  ||||||||||||||| |||| |||||||||||||| ||| || ||||||| |||||| | |  |||||||| |||||||    
T  46087207 tctttaagcacctttaataacaagtttttatgaaaatctgtataatcagtgcattagaatgtgaaacatttaactttt-tgaggaatattttctaaattt 46087109  T
Q  258 agaatctttaaagagtg 274  Q
    || ||| ||||||||||    
T  46087108 aggatccttaaagagtg 46087092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 158 - 273
Target Start/End: Complemental strand, 9534483 - 9534368
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    |||||||| ||| |||||| ||| ||||||||||||  |||  ||| |||||||| |||||| ||| ||||||||||| |||| || |||||||||||||    
T  9534483 tctttaagcacctttaataataaatttttatgaaaatttgtaaaattagtgcattgaaatttataatatttgacttttttaaataacattttttaaattt 9534384  T
Q  258 agaatctttaaagagt 273  Q
     | ||| |||||||||    
T  9534383 gggatcattaaagagt 9534368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 26756194 - 26756281
Alignment:
Q  171 ttaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattta 258  Q
    |||||| |||||||||| |||||  || ||||| | ||||||| | ||||||| ||||||||||| |||| |||||||||||||||||    
T  26756194 ttaatagtaagtttttacgaaaatttgagtaataaatgcattagagtttgtaatatttgacttttttaaataatattttttaaattta 26756281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 27542948 - 27542856
Alignment:
Q  182 tttttatgaaaaa-ctgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagt 273  Q
    ||||||||||||| |||| |||||| | ||||  ||| ||||| ||||||||||| |||| |||||||||||||||| | ||| |||||||||    
T  27542948 tttttatgaaaaaactgtataatcaatacattggaatatgtaatatttgacttttttaaagaatattttttaaatttggtatccttaaagagt 27542856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 16790297 - 16790350
Alignment:
Q  215 aatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaa 268  Q
    ||||| ||||||||||||||| ||||||| ||||| ||||||||| ||| ||||    
T  16790297 aatttataacatttgacttttttaaaaaagattttctaaatttaggatccttaa 16790350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 276
Target Start/End: Complemental strand, 32572850 - 32572789
Alignment:
Q  215 aatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagtgtc 276  Q
    ||||| ||||||||||||||| |||| || ||||| ||||||||| ||  ||||||||||||    
T  32572850 aatttataacatttgacttttttaaataacattttctaaatttagtatgcttaaagagtgtc 32572789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 273
Target Start/End: Complemental strand, 15458489 - 15458417
Alignment:
Q  201 aatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagt 273  Q
    ||||| || |||| |||||||||||||| |||||| |||| |||| ||||||||||    |||||||||||||    
T  15458489 aatcaatgtattataatttgtaacatttaacttttttaaagaatactttttaaattggagatctttaaagagt 15458417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 274
Target Start/End: Complemental strand, 17554973 - 17554853
Alignment:
Q  154 gtattctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaa 253  Q
    |||||||||||| ||||| | || ||| | ||||||||||| | | |||||| ||||||  || ||| ||||||| |||||| ||||||||| || || |    
T  17554973 gtattctttaaggaccataagtaataactatttatgaaaaaatatataatcaatgcattgtaaattgaaacatttaacttttttaaaaaataattgttta 17554874  T
Q  254 atttagaatctttaaagagtg 274  Q
     |||  ||| |||||||||||    
T  17554873 ttttgaaatgtttaaagagtg 17554853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 28874603 - 28874487
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    ||||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||  |||||||||||||| |||||| |||| ||| |||| |||||||    
T  28874603 tctttaacaaccattaatagtaaatttttatgaaaaactgtgtaatcaatgcattggaatttgtaacattttacttttttaaagaatgttttctaaattt 28874504  T
Q  258 agaatctttaaagagtg 274  Q
    || ||| |||| |||||    
T  28874503 agtatccttaacgagtg 28874487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 158 - 278
Target Start/End: Original strand, 48811363 - 48811483
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    ||||||| |||  |||||| ||||||||||||||||| |||||||||| |||||| |||||||||||||| ||||||| |||  |||||||| |||||||    
T  48811363 tctttaaaaacttttaatagtaagtttttatgaaaaattgtgtaatcaatgcattgaaatttgtaacattagacttttttaatgaatattttctaaattt 48811462  T
Q  258 agaatctttaaagagtgtctt 278  Q
    || ||| ||||||| ||||||    
T  48811463 aggatccttaaagaatgtctt 48811483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 40425226 - 40425110
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    ||||||||||| ||||||| ||||||||||| ||||| | |||||||| || |||  |||||||||||||| || ||| ||| ||||||||| |||||||    
T  40425226 tctttaagaactattaatagtaagtttttataaaaaaatttgtaatcaatgtattggaatttgtaacatttaacatttttaagaaatattttctaaattt 40425127  T
Q  258 agaatctttaaagagtg 274  Q
     | ||||||||||||||    
T  40425126 gggatctttaaagagtg 40425110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 4305157 - 4305253
Alignment:
Q  178 taagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagtg 274  Q
    |||||||||||||||||  ||||||||| | ||||| ||||| ||| ||||||||||| |||||||||| || ||||||||| ||| ||||||||||    
T  4305157 taagtttttatgaaaaatcgtgtaatcaatacattagaatttataatatttgacttttttaaaaaatatattctaaatttagtatccttaaagagtg 4305253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 158 - 257
Target Start/End: Complemental strand, 48602355 - 48602255
Alignment:
Q  158 tctttaagaaccattaatattaagttttt-atgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatt 256  Q
    |||||||||||||||||||  |||||||| ||||||||||||||||| | ||||||  ||||||| ||||||||||||| |||  |||||||| ||||||    
T  48602355 tctttaagaaccattaatagcaagtttttcatgaaaaactgtgtaattaatgcattggaatttgtcacatttgacttttttaaggaatattttctaaatt 48602256  T
Q  257 t 257  Q
    |    
T  48602255 t 48602255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 271
Target Start/End: Original strand, 34591084 - 34591197
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    |||||||| |||||||||| ||||||||||||||||  |||||||  | || ||| |||||||||||||||   |||| |||  ||||||||||| ||||    
T  34591084 tctttaaggaccattaatagtaagtttttatgaaaatatgtgtaactaatgtattgaaatttgtaacatttactttttttaaggaatattttttatattt 34591183  T
Q  258 agaatctttaaaga 271  Q
     | |||||||||||    
T  34591184 gggatctttaaaga 34591197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 256
Target Start/End: Complemental strand, 32071223 - 32071127
Alignment:
Q  160 tttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatt 256  Q
    ||||||||||||||||| ||| |||||||||||||||  |||||||  || ||  |||||||||||||||| |||| |||  |||||||| ||||||    
T  32071223 tttaagaaccattaatagtaactttttatgaaaaactaggtaatcaaagctttggaatttgtaacatttgaattttttaaggaatattttctaaatt 32071127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 274
Target Start/End: Complemental strand, 38723327 - 38723235
Alignment:
Q  182 tttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagtg 274  Q
    |||||| ||||| |||||||||||||| |||  ||||| |||||||| | |||| |||| |||||||||||||||| | ||| ||||||||||    
T  38723327 tttttacgaaaatctgtgtaatcagtgtattggaatttataacatttaatttttttaaagaatattttttaaatttgggatccttaaagagtg 38723235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 158 - 274
Target Start/End: Original strand, 45529114 - 45529230
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    |||||||| ||| |||||| ||||||||||||||||  | |||||||| |||| | ||| ||||||| |||||||||| | || |||||||| |||||||    
T  45529114 tctttaagcacccttaatagtaagtttttatgaaaatttatgtaatcaatgcactgaaacttgtaacgtttgacttttttgaagaatattttctaaattt 45529213  T
Q  258 agaatctttaaagagtg 274  Q
     | ||  ||||||||||    
T  45529214 gggatgcttaaagagtg 45529230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 257
Target Start/End: Complemental strand, 25753624 - 25753497
Alignment:
Q  130 gaaatattaatgagtgtctttagagtattctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttg 229  Q
    ||||| ||||||||||| | ||  ||| |||||||| ||| |||||| ||||||||||||||||  | |||||| | |||||| ||| || |||||||||    
T  25753624 gaaatgttaatgagtgtttctatggtactctttaagcacctttaatagtaagtttttatgaaaatttatgtaattaatgcattgaaacttataacatttg 25753525  T
Q  230 acttttataaaaaatattttttaaattt 257  Q
    |||||  | || |||||||| |||||||    
T  25753524 actttattgaagaatattttctaaattt 25753497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 38156524 - 38156598
Alignment:
Q  183 ttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattta 258  Q
    |||||| ||||  |||||||||| |||||| |||||||||||||||||||||| ||||||||| ||| ||||||||    
T  38156524 ttttattaaaatatgtgtaatcaatgcattgaaatttgtaacatttgactttt-taaaaaatactttctaaattta 38156598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 277
Target Start/End: Complemental strand, 2831645 - 2831539
Alignment:
Q  171 ttaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaag 270  Q
    |||||| || |||||||||||||  ||| |||||| |||||| ||| ||| || ||||||||||  ||||||||| ||| |  |||| ||||| ||||||    
T  2831645 ttaataataggtttttatgaaaacttgtataatcattgcatttaaaattgaaatatttgactttattaaaaaataatttcttgatttggaatccttaaag 2831546  T
Q  271 agtgtct 277  Q
    |||||||    
T  2831545 agtgtct 2831539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 274
Target Start/End: Complemental strand, 53038365 - 53038273
Alignment:
Q  183 ttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatatttttt-aaatttagaatctttaaagagtg 274  Q
    |||||||||||   | ||| ||||||||||  ||||||||| |||||| ||||  ||| |||||||||| ||||||| ||| |||||||||||    
T  53038365 ttttatgaaaattcgcgtattcagtgcattggaatttgtaatatttgaatttttgaaagaatattttttaaaatttaaaatgtttaaagagtg 53038273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 158 - 258
Target Start/End: Complemental strand, 16459354 - 16459254
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    |||||||| ||| |||||| ||||||||||||||||| |||||||   ||||||| |||||||||||||||||||||| | || ||||||||||||||||    
T  16459354 tctttaagcacctttaatagtaagtttttatgaaaaattgtgtaactcgtgcattgaaatttgtaacatttgactttttttaagaatattttttaaattt 16459255  T
Q  258 a 258  Q
    |    
T  16459254 a 16459254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 158 - 273
Target Start/End: Complemental strand, 24733283 - 24733168
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    |||||||| ||| |||||| ||||||||||| ||||  |||||||||| |||| |  ||||||||||||||||||||| || | ||||||||||||||||    
T  24733283 tctttaagtacctttaatagtaagtttttataaaaatttgtgtaatcaatgcactgtaatttgtaacatttgacttttttagagaatattttttaaattt 24733184  T
Q  258 agaatctttaaagagt 273  Q
     | ||| |||||||||    
T  24733183 gggatccttaaagagt 24733168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 156 - 276
Target Start/End: Original strand, 15353763 - 15353883
Alignment:
Q  156 attctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaat 255  Q
    ||||||||| |||||||||||  |||||||||||||||| ||| |||| | |   || |||||||||| |||| |||||| ||||||||||||| |||||    
T  15353763 attctttaaaaaccattaataacaagtttttatgaaaaattgtataattaatattttgaaatttgtaatatttcacttttttaaaaaatattttataaat 15353862  T
Q  256 ttagaatctttaaagagtgtc 276  Q
    |||| ||| || |||||||||    
T  15353863 ttaggatccttgaagagtgtc 15353883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 44253897 - 44253803
Alignment:
Q  178 taagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagt 273  Q
    ||||||||||| ||||  |||||||||| ||  ||||||||| ||||||||||||||| | ||||||||||||||||||| ||||| |||||||||    
T  44253897 taagtttttat-aaaatttgtgtaatcaatgatttaaaatttataacatttgactttttttaaaaatattttttaaatttggaatccttaaagagt 44253803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 182 - 269
Target Start/End: Complemental strand, 29217635 - 29217548
Alignment:
Q  182 tttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaa 269  Q
    |||||| ||||| ||||||||||| ||||||  ||||||||| ||||||| ||| ||| ||||||||| |||||||| ||||||||||    
T  29217635 tttttacgaaaatctgtgtaatcactgcattggaatttgtaatatttgacctttttaagaaatattttctaaatttaaaatctttaaa 29217548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 273
Target Start/End: Complemental strand, 8674537 - 8674455
Alignment:
Q  191 aaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagt 273  Q
    |||| ||| |||||||  ||||| |||||||||||||| |||||| ||||||||||||||||||||| | ||| |||||||||    
T  8674537 aaaaatgtataatcagaccattagaatttgtaacatttaacttttttaaaaaatattttttaaatttgggatccttaaagagt 8674455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 278
Target Start/End: Original strand, 35209921 - 35210047
Alignment:
Q  152 gagtattctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatatttttt 251  Q
    ||||| |||||||||||| ||||||  |||||||||| ||||  ||||| || | | ||||  |||||||||||||| |||||| |||  ||||||||||    
T  35209921 gagtactctttaagaacctttaataggaagtttttattaaaatttgtgtgattaatacattggaatttgtaacatttaacttttttaaggaatatttttt 35210020  T
Q  252 aaatttagaatctttaaagagtgtctt 278  Q
    ||||||   ||| ||||||||||||||    
T  35210021 aaatttgagatccttaaagagtgtctt 35210047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 273
Target Start/End: Complemental strand, 9200106 - 9200033
Alignment:
Q  200 taatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagt 273  Q
    |||| ||||||||  |||||||||||||||| |||| | | ||||||||||||||||| | ||| |||||||||    
T  9200106 taattagtgcatttgaatttgtaacatttgatttttttgagaaatattttttaaatttgggatccttaaagagt 9200033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 154 - 277
Target Start/End: Original strand, 39691105 - 39691228
Alignment:
Q  154 gtattctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaa 253  Q
    |||||||||||| | | | |||| ||| ||||||||||||  |||||| ||| |||||| ||| ||| |  ||||||||||| |||| |||| ||||| |    
T  39691105 gtattctttaaggatcttaaatagtaattttttatgaaaatttgtgtattcaatgcattgaaaattgaactatttgacttttttaaagaataatttttta 39691204  T
Q  254 atttagaatctttaaagagtgtct 277  Q
    || | ||||  |||||||||||||    
T  39691205 atgtggaatgcttaaagagtgtct 39691228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 9735368 - 9735413
Alignment:
Q  227 ttgacttttataaaaaatattttttaaatttagaatctttaaagag 272  Q
    ||||||||| ||||||||| || ||||||||||||| |||||||||    
T  9735368 ttgacttttttaaaaaataattattaaatttagaatgtttaaagag 9735413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 27536668 - 27536772
Alignment:
Q  131 aaatattaatgagtgtctttagagtattctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttga 230  Q
    ||||||||| ||||| ||| | || |||||||||||||||||||||| ||||||||| ||||||  ||||||||| |||||| |||||||||| ||||||    
T  27536668 aaatattaacgagtgccttcaaagcattctttaagaaccattaatatgaagtttttacgaaaaaaagtgtaatcaatgcattcaaatttgtaatatttga 27536767  T
Q  231 ctttt 235  Q
    |||||    
T  27536768 ctttt 27536772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 2827579 - 2827675
Alignment:
Q  178 taagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagtg 274  Q
    ||||||||||| ||||  |||| ||||| |||||| ||| |||||||||||||||||  |||| |||||||| ||||||| ||||||||||||||||    
T  2827579 taagtttttattaaaatttgtgcaatcaatgcattgaaacttgtaacatttgactttcttaaataatattttctaaatttggaatctttaaagagtg 2827675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 158 - 269
Target Start/End: Complemental strand, 12198306 - 12198196
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    |||||||| || ||||||| ||| ||||||||||||  |||| ||| |  ||||| |||||||||| ||||||||||| |||| ||||||||||||||||    
T  12198306 tctttaaggacaattaatagtaaatttttatgaaaatatgtgcaattaaagcattgaaatttgtaatatttgactttt-taaacaatattttttaaattt 12198208  T
Q  258 agaatctttaaa 269  Q
     ||||| |||||    
T  12198207 ggaatccttaaa 12198196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 248
Target Start/End: Complemental strand, 231404 - 231314
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattt 248  Q
    |||||||||| |||||||| |||||||| |||||||||| | |||||| ||||||||||||| || ||||| || ||| |||| |||||||    
T  231404 tctttaagaatcattaatagtaagttttaatgaaaaactttataatcaatgcattaaaatttatagcatttcacatttttaaagaatattt 231314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 274
Target Start/End: Original strand, 30370876 - 30370967
Alignment:
Q  182 tttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagtg 274  Q
    ||||||| |||| |||||||||||   |||| |||||| ||| ||||||||||||||||||||| |||||||||| | |||| ||||||||||    
T  30370876 tttttattaaaatctgtgtaatcaagacattgaaatttataa-atttgacttttataaaaaatactttttaaattaaaaatccttaaagagtg 30370967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 41583656 - 41583538
Alignment:
Q  156 attctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaat 255  Q
    |||||||||||| | | |||| ||| |||||||||||| ||||||| ||| ||||||  ||||||||| |||| ||||||  ||  |||| ||| |||||    
T  41583656 attctttaagaatcttcaatagtaaatttttatgaaaatctgtgtattcaatgcattggaatttgtaatatttaactttttgaaggaataatttctaaat 41583557  T
Q  256 ttagaatctttaaagagtg 274  Q
    || | ||| ||||||||||    
T  41583556 ttgggatccttaaagagtg 41583538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 24173279 - 24173176
Alignment:
Q  171 ttaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaag 270  Q
    |||||| |||| |||| ||||||  | |||||| | ||||||  |||||||||||||| | ||||| |||||||||||| |||||||   ||| ||||||    
T  24173279 ttaatagtaaggttttttgaaaatatttgtaattaatgcattggaatttgtaacatttaatttttaaaaaaaatattttctaaatttgagatcgttaaag 24173180  T
Q  271 agtg 274  Q
    ||||    
T  24173179 agtg 24173176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 8453946 - 8453890
Alignment:
Q  178 taagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttt 234  Q
    ||||||||||| ||||  | |||||||| ||||||| || |||||||||||||||||    
T  8453946 taagtttttataaaaacgtatgtaatcaatgcattagaaattgtaacatttgacttt 8453890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 158 - 296
Target Start/End: Complemental strand, 15588766 - 15588628
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaattt 257  Q
    |||||||||| |||||| | ||||||||||||||||| | |||||||| |||||| ||||||||||||||| | |||| |||| |||||||| |||||||    
T  15588766 tctttaagaatcattaacagtaagtttttatgaaaaattatgtaatcaatgcattgaaatttgtaacatttaatttttttaaagaatattttataaattt 15588667  T
Q  258 agaatctttaaagagtgtcttagaaacatttgttaacaa 296  Q
       ||| ||||||| |||||  ||| || ||||||||||    
T  15588666 gatatccttaaagaatgtctcggaagcacttgttaacaa 15588628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 178 - 287
Target Start/End: Original strand, 6555053 - 6555162
Alignment:
Q  178 taagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatattttttaaatttagaatctttaaagagtgtct 277  Q
    ||||||||||| |||| | ||||||| | |||||| |||||| ||||||||||||||| |||  |||| ||| |||||||||||| |||||||||||||     
T  6555053 taagtttttataaaaatcagtgtaattaatgcattgaaatttataacatttgacttttttaaggaatactttctaaatttagaatatttaaagagtgtcc 6555152  T
Q  278 tagaaacatt 287  Q
    |||| |||||    
T  6555153 tagatacatt 6555162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 4806498 - 4806568
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacattt 228  Q
    ||||||||||||||||||| ||||||||||||||||  |||||||||| || ||| |||||||||||||||    
T  4806498 tctttaagaaccattaatagtaagtttttatgaaaatatgtgtaatcaatgtattgaaatttgtaacattt 4806568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 228
Target Start/End: Complemental strand, 2963323 - 2963255
Alignment:
Q  160 tttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacattt 228  Q
    |||||| ||| |||| | ||| |||||| |||||  ||| ||||||||||||| |||||||||||||||    
T  2963323 tttaagcacctttaacagtaaatttttacgaaaatttgtataatcagtgcattgaaatttgtaacattt 2963255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 213640 - 213547
Alignment:
Q  158 tctttaagaaccattaatattaagtttttatgaaaaactgtgtaatcagtgcattaaaatttgtaacatttgacttttataaaaaatatttttt 251  Q
    |||||||| ||| |||||| | || ||||||||||   |||||| |||  ||||| ||| |||||| |||||| |||| |||||||||||||||    
T  213640 tctttaaggacctttaatagtgagattttatgaaagtttgtgtattcaacgcattgaaacttgtaatatttgaattttttaaaaaatatttttt 213547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University